FFCP PHASE1:Mm9::chr10:127668686..127668697,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100504989,21853 | |EntrezGene=100504989,21853 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=57 | |||
|TSSclassifier=NA | |||
|UniProt=Q9R1X4,Q3U574 | |UniProt=Q9R1X4,Q3U574 | ||
|association_with_transcript=-421bp_to_ENSMUST00000105246,NM_001136082,NM_001164080,NM_001164081,uc007hlt.2,uc007hlu.2,uc007hlv.2,uc007hlw.2,uc011xqc.1_5end | |association_with_transcript=-421bp_to_ENSMUST00000105246,NM_001136082,NM_001164080,NM_001164081,uc007hlt.2,uc007hlu.2,uc007hlv.2,uc007hlw.2,uc011xqc.1_5end | ||
|cluster_id=chr10:127668686..127668697,+ | |||
|description=CAGE_peak_4_at_LOC100504989_5end,CAGE_peak_4_at_Timeless_5end | |description=CAGE_peak_4_at_LOC100504989_5end,CAGE_peak_4_at_Timeless_5end | ||
|id=chr10:127668686..127668697,+ | |id=chr10:127668686..127668697,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000970!5.61e-38!9;UBERON:0000019!5.61e-38!9;UBERON:0000047!5.61e-38!9;UBERON:0004088!5.61e-38!9;UBERON:0002104!5.61e-38!9;UBERON:0001456!5.61e-38!9;UBERON:0003072!5.61e-38!9;UBERON:0003071!5.61e-38!9;UBERON:0004128!5.61e-38!9;UBERON:0001444!6.25e-31!11;UBERON:0000020!2.76e-28!12;UBERON:0001032!2.76e-28!12;UBERON:0004456!2.76e-28!12;UBERON:0005085!4.78e-26!13;UBERON:0003056!7.42e-08!49 | |ontology_enrichment_uberon=UBERON:0000970!5.61e-38!9;UBERON:0000019!5.61e-38!9;UBERON:0000047!5.61e-38!9;UBERON:0004088!5.61e-38!9;UBERON:0002104!5.61e-38!9;UBERON:0001456!5.61e-38!9;UBERON:0003072!5.61e-38!9;UBERON:0003071!5.61e-38!9;UBERON:0004128!5.61e-38!9;UBERON:0001444!6.25e-31!11;UBERON:0000020!2.76e-28!12;UBERON:0001032!2.76e-28!12;UBERON:0004456!2.76e-28!12;UBERON:0005085!4.78e-26!13;UBERON:0003056!7.42e-08!49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,4.97e-77,9;UBERON:0000019,4.97e-77,9;UBERON:0000047,4.97e-77,9;UBERON:0010312,4.97e-77,9;UBERON:0004088,4.97e-77,9;UBERON:0002104,4.97e-77,9;UBERON:0001456,4.97e-77,9;UBERON:0003072,4.97e-77,9;UBERON:0004128,4.97e-77,9;UBERON:0003071,4.97e-77,9;UBERON:0001444,4.29e-63,11;UBERON:0000020,7.26e-58,12;UBERON:0001032,7.26e-58,12;UBERON:0004456,7.26e-58,12;UBERON:0000033,1.94e-53,13;UBERON:0005085,1.94e-53,13;UBERON:0007811,2.05e-19,36;UBERON:0000153,2.91e-16,43;UBERON:0003056,2.84e-14,49;UBERON:0002346,6.42e-11,64;UBERON:0003075,6.42e-11,64;UBERON:0007284,6.42e-11,64;UBERON:0010371,1.46e-09,73;UBERON:0010314,1.48e-07,92;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43132487258974,2.98872735763515,3.06105620669094,6.78171680260718,4.42237244483631,7.68682321709099,6.27801554550183,12.9351685369508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720244376125241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0,0,0,0.0985044823755635,0,0.309873682371932,0,0.249810577937946,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43132487258974,2.98872735763515,3.06105620669094,6.78171680260718,4.42237244483631,7.68682321709099,6.27801554550183,12.9351685369508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720244376125241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0,0,0,0.0985044823755635,0,0.309873682371932,0,0.249810577937946,0,0,0,0,0 | ||
|short_description=p4@LOC100504989,p4@Timeless | |short_description=p4@LOC100504989,p4@Timeless | ||
}} | }} |
Latest revision as of 18:39, 25 September 2015
Short description: | p4@LOC100504989, p4@Timeless |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LOC100504989_5end, CAGE_peak_4_at_Timeless_5end |
Coexpression cluster: | MCL_coexpression_mm9:57 |
Association with transcript: | -421bp_to_ENSMUST00000105246, NM_001136082, NM_001164080, NM_001164081, uc007hlt.2, uc007hlu.2, uc007hlv.2, uc007hlw.2, uc011xqc.1_5end |
EntrezGene: | 100504989,21853 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 4.97e-77 | 9 |
camera-type eye | 4.97e-77 | 9 |
simple eye | 4.97e-77 | 9 |
immature eye | 4.97e-77 | 9 |
ocular region | 4.97e-77 | 9 |
visual system | 4.97e-77 | 9 |
face | 4.97e-77 | 9 |
optic cup | 4.97e-77 | 9 |
optic vesicle | 4.97e-77 | 9 |
eye primordium | 4.97e-77 | 9 |
subdivision of head | 4.29e-63 | 11 |
sense organ | 7.26e-58 | 12 |
sensory system | 7.26e-58 | 12 |
entire sense organ system | 7.26e-58 | 12 |
head | 1.94e-53 | 13 |
ectodermal placode | 1.94e-53 | 13 |
craniocervical region | 2.05e-19 | 36 |
anterior region of body | 2.91e-16 | 43 |
pre-chordal neural plate | 2.84e-14 | 49 |
neurectoderm | 6.42e-11 | 64 |
neural plate | 6.42e-11 | 64 |
presumptive neural plate | 6.42e-11 | 64 |
ecto-epithelium | 1.46e-09 | 73 |
structure with developmental contribution from neural crest | 1.48e-07 | 92 |
ectoderm-derived structure | 2.60e-07 | 95 |
ectoderm | 2.60e-07 | 95 |
presumptive ectoderm | 2.60e-07 | 95 |