FFCP PHASE1:Mm9::chr2:154233771..154233807,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20648 | |EntrezGene=20648 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3323 | |||
|TSSclassifier=NA | |||
|UniProt=Q61234 | |UniProt=Q61234 | ||
|association_with_transcript=9bp_to_ENSMUST00000028991_5end | |association_with_transcript=9bp_to_ENSMUST00000028991_5end | ||
|cluster_id=chr2:154233771..154233807,- | |||
|description=CAGE_peak_1_at_Snta1_5end | |description=CAGE_peak_1_at_Snta1_5end | ||
|id=chr2:154233771..154233807,- | |id=chr2:154233771..154233807,- | ||
|ontology_enrichment_celltype=CL:0000333!3.03e-07!10;CL:0000095!3.03e-07!10;CL:0000243!3.03e-07!10;CL:0000123!3.03e-07!10;CL:0000125!3.03e-07!10;CL:0000030!3.03e-07!10;CL:0000339!3.03e-07!10 | |ontology_enrichment_celltype=CL:0000333!3.03e-07!10;CL:0000095!3.03e-07!10;CL:0000243!3.03e-07!10;CL:0000123!3.03e-07!10;CL:0000125!3.03e-07!10;CL:0000030!3.03e-07!10;CL:0000339!3.03e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000333,2.63e-07,10;CL:0000095,2.63e-07,10;CL:0000243,2.63e-07,10;CL:0000123,2.63e-07,10;CL:0000125,2.63e-07,10;CL:0000030,2.63e-07,10;CL:0000339,2.63e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!2.43e-10!23;UBERON:0001009!2.43e-10!23;UBERON:0007100!2.52e-09!18;UBERON:0000948!2.52e-09!18;UBERON:0005498!2.52e-09!18;UBERON:0004140!2.52e-09!18;UBERON:0009881!2.52e-09!18;UBERON:0004141!2.52e-09!18;UBERON:0003084!2.52e-09!18;UBERON:0007005!2.52e-09!18;UBERON:0004139!2.52e-09!18;UBERON:0004291!2.52e-09!18;UBERON:0004872!1.44e-07!33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,1.94e-10,23;UBERON:0001009,1.94e-10,23;UBERON:0007100,2.08e-09,18;UBERON:0000948,2.08e-09,18;UBERON:0005498,2.08e-09,18;UBERON:0004140,2.08e-09,18;UBERON:0009881,2.08e-09,18;UBERON:0004141,2.08e-09,18;UBERON:0003084,2.08e-09,18;UBERON:0007005,2.08e-09,18;UBERON:0004139,2.08e-09,18;UBERON:0004291,2.08e-09,18;UBERON:0004872,1.24e-07,33;UBERON:0010314,9.14e-07,92 | |||
|phase1_expression=2.40223270657191,7.67745896806594,9.09998478779072,12.0985684522732,14.5259761684441,0.839396359559449,0.467225281191051,0,0.563154888606667,0.234064526321993,0,0,0,0,0.333109761815663,0.404950534779652,1.39912375625629,0.157731082679119,0.411343300817216,0,3.91199134694921,0,0,1.75991665072747,1.14704640533585,5.16808767703518,2.58457197695445,1.72376986148711,2.66032787238923,2.26827116783938,1.99557459589774,0,0.61506478758457,0,0,0.498703936075477,0,0,0,0,0,0.683045484958446,0,8.18329316841252,10.3404469843905,14.6837401729345,64.1560902365392,63.2272953503295,86.5563559973819,91.5764824639875,27.8572979034471,21.5628846547457,0,0,0,5.91696702882678,29.5129443136919,19.0798674142654,1.21389876515759,0.528990979272033,1.26766280701236,7.11573517345177,16.0073063300005,15.7482450524245,14.8329954385046,19.1829631035447,21.5712079573251,53.0221261343745,0.725827286159344,1.35005938331691,1.05162480675691,11.7116903605559,11.0434270475807,0.367472397644862,0.670918297127655,1.83843757322004,11.0115880999389,6.89511625660014,7.0659005297872,0.923204014111357,0.823388792421687,1.56274011167028,7.2587579740359,14.069065250792,10.0846843532695,2.94628585473668,4.55589378557129,1.4911955666024,9.84440513331393,14.81202578093,7.24661221754194,3.44169550792555,8.15965600449301,1.61910957491345,1.94932925234301,5.37632264516803,17.9768857768642,8.01022516116871,10.1316541795119,10.9535268098205,5.0703631119605,2.56652954828636,0,7.11066703153331,0.216491041011214,0.253359865475099,1.01104889002957,7.4219521817389,1.03575153458869,6.08612770165782,4.16364784238726,7.61163695780353,8.53277339847416,5.72746034099966,6.82014501387088,6.78599593180248,5.43828929015623,6.94076913215576,12.3845477272982,22.6473589926373,27.6051898075492,16.0008833534623,1.86391761218122,4.9772735491963,8.16842156572475,2.55457055208591,0,0,0,7.18995069143149,6.40500843946077,2.01046963380583,4.51943232499919,4.60287823194595,7.48036960414416,7.46309810111685,3.7680564624617,10.5745925018579,2.27450482590307,38.9317433389977,0.520481771850815,2.98872735763515,1.26043490863744,4.06903008156431,4.35433594568498,5.38077625196369,5.90320864726292,30.7857011179429,0.431135985865684,1.51284864134255,1.23165786914764,1.97276159184817,1.94633074457919,3.48252166522167,2.46938563689532,0.995171334092466,0,0,0,6.62802472113606,9.14651633926275,8.64297895012871,10.180023630164,13.3799677588235,17.4321837562737,19.7653853037847,30.0466209567573,21.9518843650279,26.0004562863299,19.043425833175,25.9420190546738,26.7545976988358,20.8572609526498,34.3568432026552,6.51898840548794,2.16099685996497,4.62586296177317,3.17340679996253,0.213288250535234,0.928946687441754,0.644337306610467,0.403367049246685,0.22237804384487,1.52180500890047,2.37264530772256,2.47048432086016,2.5133520880027,2.78539060857611,4.67913809085888,3.59527763461689,2.37751854862164,4.58024928485045,1.32767530667157,1.37098215131675,2.25415471346161,3.25842124552503,3.29719228184964,4.48869247298039,4.7427402843193,6.6424566590821,6.43694784149637,10.8589504251184,10.0793893209631,0.83422552858047,0.786235980452812,0.674586337154561,1.21716072833102,2.17059443777175,1.52775511068852,1.15078454980324,4.53978634970099,3.0201755450689,2.87536413054709,3.72140947668503,6.24075346229121,8.33510297225469,5.56131981917928,6.75420929908714,2.21703828199926,1.70542270593436,1.46668478797823,1.01847051465113,1.87752198630802,2.34508760418542,1.6663054862021,5.26860849216057,2.52216230569906,1.32878813789265,2.39182152986231,4.91589944147214,5.18054945597687,5.35201516751593,3.01582567878545,4.89515115436839,10.3270497333998,9.93372286697037,8.0275294993896,8.55645312123083,0,94.6765977016399,1.26203287766503,0.390438744296638,1.29254038639679,2.15071918157297,1.78238939265915,1.13230612315533,0,2.33804686329049,1.18586333383957,3.85585579706168,3.26462195979018,5.1639025063504,5.21238269931443,4.94910368917606,0,0.728341908464944,1.81394134178851,0.565815239267694,2.06711325016541,2.15204603560749,4.65170927702798,1.09060118843252,1.42598951353889,2.21225730555071,2.10837217149998,2.06271086496374,2.7235168460303,1.62054984628179,0.905510786479282,2.14337035031592,2.6601035046341,4.8159580752559,3.62007845324666,5.78483403317739,6.33613611772018,2.54198485036584,2.20528398054962,8.40919890001548,5.8127193610526,3.19658502119226,2.02932984805332,1.47726809770555,3.49777003955821,7.97328798645192,1.87957968877638,2.27025554759545,1.66675074632741,1.88368457004691,2.1871076435364,1.83022538565218,0,0,0.138199973804424,4.77335309007557,0.316335993581135,1.62655573701479,1.72808545314882,1.88179466413022,2.40198820120795,3.37160865962052,3.30613822901344,8.11443420150492,2.46268449254406,6.83473244395618,0.56369293868419,1.04661582230785,1.32366792365678,0.972255941720238,1.93739735216597,1.18269287843545,1.29092962510329,1.8228613878153,1.25831213310853,1.20792060413003,8.3528701814781,0.948033361884535,1.62180172232131,0.616265742988964,0.25984164595559,0.716106782669926,0.596044064343795,0.360586348559907,0.738447635872886,0.201932899896295,0.15241361331,0.302478555410522,0.584747284438515,0.192423683280659,0.350630706544707,15.4176660858344,0.221985953374065,0.448569283047378,0.167884616364078,4.25017106870819,15.0145980360946,2.19781949120718,1.92931541171159,1.50471631210609,5.0827665835536,6.44455331110048,6.30185064783336,3.60891682921744,1.37016503954128,5.2877572817279,3.37511250115903,2.70192721934532,3.62513927187364,3.62432218226274,0.415149390336707,1.99512436700516,0.170733605754134,3.8897074730927,3.98265008993166,7.16989682955055,13.5570503958985,12.3621034343337,12.8367683836726,10.1078884705519,11.4065684950608,12.449338531481,12.9225280308438,12.8690556333787,13.5547706735247,9.52587382566147,14.9490780468864,14.4681915347779,13.5988347265091,9.56792980873583,12.0004238334895,14.5530161050657,11.4449371174714,10.7556348307923,12.234219453993,12.8614203995348,12.6220301282213,13.1534855718921,11.1359373353607,16.2731258780744,15.7784574105152,13.98763649733,11.4584692087513,12.7048209772492,7.9091710502268,8.49355964989016,12.3983752476066,12.0327790267047,30.2235564668773,17.8679049486808,16.6944841646703 | |phase1_expression=2.40223270657191,7.67745896806594,9.09998478779072,12.0985684522732,14.5259761684441,0.839396359559449,0.467225281191051,0,0.563154888606667,0.234064526321993,0,0,0,0,0.333109761815663,0.404950534779652,1.39912375625629,0.157731082679119,0.411343300817216,0,3.91199134694921,0,0,1.75991665072747,1.14704640533585,5.16808767703518,2.58457197695445,1.72376986148711,2.66032787238923,2.26827116783938,1.99557459589774,0,0.61506478758457,0,0,0.498703936075477,0,0,0,0,0,0.683045484958446,0,8.18329316841252,10.3404469843905,14.6837401729345,64.1560902365392,63.2272953503295,86.5563559973819,91.5764824639875,27.8572979034471,21.5628846547457,0,0,0,5.91696702882678,29.5129443136919,19.0798674142654,1.21389876515759,0.528990979272033,1.26766280701236,7.11573517345177,16.0073063300005,15.7482450524245,14.8329954385046,19.1829631035447,21.5712079573251,53.0221261343745,0.725827286159344,1.35005938331691,1.05162480675691,11.7116903605559,11.0434270475807,0.367472397644862,0.670918297127655,1.83843757322004,11.0115880999389,6.89511625660014,7.0659005297872,0.923204014111357,0.823388792421687,1.56274011167028,7.2587579740359,14.069065250792,10.0846843532695,2.94628585473668,4.55589378557129,1.4911955666024,9.84440513331393,14.81202578093,7.24661221754194,3.44169550792555,8.15965600449301,1.61910957491345,1.94932925234301,5.37632264516803,17.9768857768642,8.01022516116871,10.1316541795119,10.9535268098205,5.0703631119605,2.56652954828636,0,7.11066703153331,0.216491041011214,0.253359865475099,1.01104889002957,7.4219521817389,1.03575153458869,6.08612770165782,4.16364784238726,7.61163695780353,8.53277339847416,5.72746034099966,6.82014501387088,6.78599593180248,5.43828929015623,6.94076913215576,12.3845477272982,22.6473589926373,27.6051898075492,16.0008833534623,1.86391761218122,4.9772735491963,8.16842156572475,2.55457055208591,0,0,0,7.18995069143149,6.40500843946077,2.01046963380583,4.51943232499919,4.60287823194595,7.48036960414416,7.46309810111685,3.7680564624617,10.5745925018579,2.27450482590307,38.9317433389977,0.520481771850815,2.98872735763515,1.26043490863744,4.06903008156431,4.35433594568498,5.38077625196369,5.90320864726292,30.7857011179429,0.431135985865684,1.51284864134255,1.23165786914764,1.97276159184817,1.94633074457919,3.48252166522167,2.46938563689532,0.995171334092466,0,0,0,6.62802472113606,9.14651633926275,8.64297895012871,10.180023630164,13.3799677588235,17.4321837562737,19.7653853037847,30.0466209567573,21.9518843650279,26.0004562863299,19.043425833175,25.9420190546738,26.7545976988358,20.8572609526498,34.3568432026552,6.51898840548794,2.16099685996497,4.62586296177317,3.17340679996253,0.213288250535234,0.928946687441754,0.644337306610467,0.403367049246685,0.22237804384487,1.52180500890047,2.37264530772256,2.47048432086016,2.5133520880027,2.78539060857611,4.67913809085888,3.59527763461689,2.37751854862164,4.58024928485045,1.32767530667157,1.37098215131675,2.25415471346161,3.25842124552503,3.29719228184964,4.48869247298039,4.7427402843193,6.6424566590821,6.43694784149637,10.8589504251184,10.0793893209631,0.83422552858047,0.786235980452812,0.674586337154561,1.21716072833102,2.17059443777175,1.52775511068852,1.15078454980324,4.53978634970099,3.0201755450689,2.87536413054709,3.72140947668503,6.24075346229121,8.33510297225469,5.56131981917928,6.75420929908714,2.21703828199926,1.70542270593436,1.46668478797823,1.01847051465113,1.87752198630802,2.34508760418542,1.6663054862021,5.26860849216057,2.52216230569906,1.32878813789265,2.39182152986231,4.91589944147214,5.18054945597687,5.35201516751593,3.01582567878545,4.89515115436839,10.3270497333998,9.93372286697037,8.0275294993896,8.55645312123083,0,94.6765977016399,1.26203287766503,0.390438744296638,1.29254038639679,2.15071918157297,1.78238939265915,1.13230612315533,0,2.33804686329049,1.18586333383957,3.85585579706168,3.26462195979018,5.1639025063504,5.21238269931443,4.94910368917606,0,0.728341908464944,1.81394134178851,0.565815239267694,2.06711325016541,2.15204603560749,4.65170927702798,1.09060118843252,1.42598951353889,2.21225730555071,2.10837217149998,2.06271086496374,2.7235168460303,1.62054984628179,0.905510786479282,2.14337035031592,2.6601035046341,4.8159580752559,3.62007845324666,5.78483403317739,6.33613611772018,2.54198485036584,2.20528398054962,8.40919890001548,5.8127193610526,3.19658502119226,2.02932984805332,1.47726809770555,3.49777003955821,7.97328798645192,1.87957968877638,2.27025554759545,1.66675074632741,1.88368457004691,2.1871076435364,1.83022538565218,0,0,0.138199973804424,4.77335309007557,0.316335993581135,1.62655573701479,1.72808545314882,1.88179466413022,2.40198820120795,3.37160865962052,3.30613822901344,8.11443420150492,2.46268449254406,6.83473244395618,0.56369293868419,1.04661582230785,1.32366792365678,0.972255941720238,1.93739735216597,1.18269287843545,1.29092962510329,1.8228613878153,1.25831213310853,1.20792060413003,8.3528701814781,0.948033361884535,1.62180172232131,0.616265742988964,0.25984164595559,0.716106782669926,0.596044064343795,0.360586348559907,0.738447635872886,0.201932899896295,0.15241361331,0.302478555410522,0.584747284438515,0.192423683280659,0.350630706544707,15.4176660858344,0.221985953374065,0.448569283047378,0.167884616364078,4.25017106870819,15.0145980360946,2.19781949120718,1.92931541171159,1.50471631210609,5.0827665835536,6.44455331110048,6.30185064783336,3.60891682921744,1.37016503954128,5.2877572817279,3.37511250115903,2.70192721934532,3.62513927187364,3.62432218226274,0.415149390336707,1.99512436700516,0.170733605754134,3.8897074730927,3.98265008993166,7.16989682955055,13.5570503958985,12.3621034343337,12.8367683836726,10.1078884705519,11.4065684950608,12.449338531481,12.9225280308438,12.8690556333787,13.5547706735247,9.52587382566147,14.9490780468864,14.4681915347779,13.5988347265091,9.56792980873583,12.0004238334895,14.5530161050657,11.4449371174714,10.7556348307923,12.234219453993,12.8614203995348,12.6220301282213,13.1534855718921,11.1359373353607,16.2731258780744,15.7784574105152,13.98763649733,11.4584692087513,12.7048209772492,7.9091710502268,8.49355964989016,12.3983752476066,12.0327790267047,30.2235564668773,17.8679049486808,16.6944841646703 | ||
|short_description=p1@Snta1 | |short_description=p1@Snta1 | ||
}} | }} |
Latest revision as of 23:10, 25 September 2015
Short description: | p1@Snta1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Snta1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3323 |
Association with transcript: | 9bp_to_ENSMUST00000028991_5end |
EntrezGene: | Snta1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 2.63e-07 | 10 |
neuron associated cell | 2.63e-07 | 10 |
glial cell (sensu Vertebrata) | 2.63e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 2.63e-07 | 10 |
glial cell | 2.63e-07 | 10 |
glioblast | 2.63e-07 | 10 |
glioblast (sensu Vertebrata) | 2.63e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 1.94e-10 | 23 |
circulatory system | 1.94e-10 | 23 |
primary circulatory organ | 2.08e-09 | 18 |
heart | 2.08e-09 | 18 |
primitive heart tube | 2.08e-09 | 18 |
primary heart field | 2.08e-09 | 18 |
anterior lateral plate mesoderm | 2.08e-09 | 18 |
heart tube | 2.08e-09 | 18 |
heart primordium | 2.08e-09 | 18 |
cardiac mesoderm | 2.08e-09 | 18 |
cardiogenic plate | 2.08e-09 | 18 |
heart rudiment | 2.08e-09 | 18 |
splanchnic layer of lateral plate mesoderm | 1.24e-07 | 33 |
structure with developmental contribution from neural crest | 9.14e-07 | 92 |