FFCP PHASE1:Mm9::chr1:122499088..122499099,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13798 | |EntrezGene=13798 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=224 | |MCL_coexpression_id=224 | ||
|TSSclassifier=NA | |||
|UniProt=P09065,Q3USA2 | |UniProt=P09065,Q3USA2 | ||
|association_with_transcript=24bp_to_NM_010133,uc007cjm.2_5end | |association_with_transcript=24bp_to_NM_010133,uc007cjm.2_5end | ||
|cluster_id=chr1:122499088..122499099,+ | |||
|description=CAGE_peak_2_at_En1_5end | |description=CAGE_peak_2_at_En1_5end | ||
|id=chr1:122499088..122499099,+ | |id=chr1:122499088..122499099,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.63e-10!50;CL:0000117!3.01e-09!23;CL:0000337!3.01e-09!23;CL:0002319!2.95e-08!43;CL:0000221!6.28e-08!44;CL:0000133!6.28e-08!44;CL:0000393!7.03e-08!39;CL:0000211!7.03e-08!39 | |ontology_enrichment_celltype=CL:0000055!6.63e-10!50;CL:0000117!3.01e-09!23;CL:0000337!3.01e-09!23;CL:0002319!2.95e-08!43;CL:0000221!6.28e-08!44;CL:0000133!6.28e-08!44;CL:0000393!7.03e-08!39;CL:0000211!7.03e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.96e-17,23;CL:0000337,9.96e-17,23;CL:0000120,1.28e-16,3;CL:0002614,1.03e-15,3;CL:0002610,2.86e-15,3;CL:0000540,2.69e-11,33;CL:0000047,2.69e-11,33;CL:0000031,2.69e-11,33;CL:0000404,2.69e-11,33;CL:0002319,1.88e-10,43;CL:0000221,3.50e-10,44;CL:0000133,3.50e-10,44;CL:0000393,2.27e-09,39;CL:0000211,2.27e-09,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002102!1.08e-07!8;UBERON:0004710!1.08e-07!8;UBERON:0005419!1.08e-07!8;UBERON:0005417!1.08e-07!8;UBERON:0005729!1.08e-07!8;UBERON:0003102!3.32e-07!23 | |ontology_enrichment_uberon=UBERON:0002102!1.08e-07!8;UBERON:0004710!1.08e-07!8;UBERON:0005419!1.08e-07!8;UBERON:0005417!1.08e-07!8;UBERON:0005729!1.08e-07!8;UBERON:0003102!3.32e-07!23 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002950,3.83e-20,4;UBERON:0001891,3.83e-20,4;UBERON:0009616,3.83e-20,4;UBERON:0010286,3.83e-20,4;UBERON:0002038,1.03e-15,3;UBERON:0009663,1.03e-15,3;UBERON:0009661,1.03e-15,3;UBERON:0000125,1.03e-15,3;UBERON:0002308,1.03e-15,3;UBERON:0004684,2.86e-15,3;UBERON:0002275,2.86e-15,3;UBERON:0002102,4.83e-11,7;UBERON:0004710,4.83e-11,7;UBERON:0005419,4.83e-11,7;UBERON:0005417,4.83e-11,7;UBERON:0005729,4.83e-11,7;UBERON:0010708,1.09e-09,8;UBERON:0001017,8.77e-07,73 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.912392380975631,0.550640256485045,0,0,0,0,0.699932108126813,7.18762821824858,0,0,0,0,0,0.515672092277442,13.7575193384526,18.5146842745212,20.9164363157039,0,0,0,0,0,0.599200221036809,0.768436610643109,0,0,0,0,0.220868540951614,0,0,0,1.10115880999389,1.91531007127782,3.37934373163736,0.527545150920775,0.0914876436024097,0.52091337055676,2.79182999001381,3.37657566019008,3.20876320331301,0.294628585473668,0.427115042397309,0,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,0.209446706813455,0,0,0,0,1.64769703345305,0,0,0,0,0.83115217823824,0.648965052271031,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0.862271971731369,0.567318240503458,1.40760899331159,1.09597866213787,1.66828349535359,0.696504333044333,1.64625709126355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703270119553219,4.26230857979356,0.757412781613119,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65954501176592,0.968786560175433,0.542816324353403,0.238744688006273,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576060012515731,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66059756134683,0.399024873401031,0.853668028770671,0.243106717068294,0.419226325255965,0.735374033800057,0,0.206035057238894,0.64183841918363,1.26348605881899,0,0.188626341386076,0.280924522409647,0.384150914429216,0.34461281373368,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0,0.564656282491984,0.169229215783353,0,0.789209134313529,0.543216455383447,0,0.355905054372522,0.0985044823755635,0.818462086339379,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0.214871054048298,0.191288332068843,0.441182838239031,0.231867835620421 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.912392380975631,0.550640256485045,0,0,0,0,0.699932108126813,7.18762821824858,0,0,0,0,0,0.515672092277442,13.7575193384526,18.5146842745212,20.9164363157039,0,0,0,0,0,0.599200221036809,0.768436610643109,0,0,0,0,0.220868540951614,0,0,0,1.10115880999389,1.91531007127782,3.37934373163736,0.527545150920775,0.0914876436024097,0.52091337055676,2.79182999001381,3.37657566019008,3.20876320331301,0.294628585473668,0.427115042397309,0,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,0.209446706813455,0,0,0,0,1.64769703345305,0,0,0,0,0.83115217823824,0.648965052271031,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0.862271971731369,0.567318240503458,1.40760899331159,1.09597866213787,1.66828349535359,0.696504333044333,1.64625709126355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703270119553219,4.26230857979356,0.757412781613119,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65954501176592,0.968786560175433,0.542816324353403,0.238744688006273,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576060012515731,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66059756134683,0.399024873401031,0.853668028770671,0.243106717068294,0.419226325255965,0.735374033800057,0,0.206035057238894,0.64183841918363,1.26348605881899,0,0.188626341386076,0.280924522409647,0.384150914429216,0.34461281373368,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0,0.564656282491984,0.169229215783353,0,0.789209134313529,0.543216455383447,0,0.355905054372522,0.0985044823755635,0.818462086339379,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0.214871054048298,0.191288332068843,0.441182838239031,0.231867835620421 | ||
|short_description=p2@En1 | |short_description=p2@En1 | ||
}} | }} |
Latest revision as of 06:34, 26 September 2015
Short description: | p2@En1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_En1_5end |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | 24bp_to_NM_010133, uc007cjm.2_5end |
EntrezGene: | En1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.96e-17 | 23 |
neuroblast (sensu Vertebrata) | 9.96e-17 | 23 |
granule cell | 1.28e-16 | 3 |
neuron of the substantia nigra | 1.03e-15 | 3 |
raphe nuclei neuron | 2.86e-15 | 3 |
neuron | 2.69e-11 | 33 |
neuronal stem cell | 2.69e-11 | 33 |
neuroblast | 2.69e-11 | 33 |
electrically signaling cell | 2.69e-11 | 33 |
neural cell | 1.88e-10 | 43 |
ectodermal cell | 3.50e-10 | 44 |
neurectodermal cell | 3.50e-10 | 44 |
electrically responsive cell | 2.27e-09 | 39 |
electrically active cell | 2.27e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of midbrain | 3.83e-20 | 4 |
midbrain | 3.83e-20 | 4 |
presumptive midbrain | 3.83e-20 | 4 |
midbrain neural tube | 3.83e-20 | 4 |
substantia nigra | 1.03e-15 | 3 |
telencephalic nucleus | 1.03e-15 | 3 |
midbrain nucleus | 1.03e-15 | 3 |
neural nucleus | 1.03e-15 | 3 |
nucleus of brain | 1.03e-15 | 3 |
raphe nuclei | 2.86e-15 | 3 |
reticular formation | 2.86e-15 | 3 |
forelimb | 4.83e-11 | 7 |
pectoral appendage | 4.83e-11 | 7 |
pectoral appendage bud | 4.83e-11 | 7 |
forelimb bud | 4.83e-11 | 7 |
forelimb/pectoral fin field | 4.83e-11 | 7 |
pectoral complex | 1.09e-09 | 8 |
central nervous system | 8.77e-07 | 73 |