FFCP PHASE1:Mm9::chr1:129765361..129765384,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=226407 | |EntrezGene=226407 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=614 | |MCL_coexpression_id=614 | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000142662_5end | |association_with_transcript=0bp_to_ENSMUST00000142662_5end | ||
|cluster_id=chr1:129765361..129765384,+ | |||
|description=CAGE_peak_1_at_Rab3gap1_5end | |description=CAGE_peak_1_at_Rab3gap1_5end | ||
|id=chr1:129765361..129765384,+ | |id=chr1:129765361..129765384,+ | ||
|ontology_enrichment_celltype=CL:0000838!2.30e-07!12 | |ontology_enrichment_celltype=CL:0000838!2.30e-07!12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.30e-07,12 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!5.44e-09!154;UBERON:0003408!5.25e-08!24;UBERON:0006562!7.43e-08!24;UBERON:0001557!7.43e-08!24;UBERON:0001042!7.43e-08!24;UBERON:0008814!7.43e-08!24;UBERON:0009145!7.43e-08!24;UBERON:0002370!1.55e-07!23;UBERON:0000974!1.55e-07!23;UBERON:0004807!1.55e-07!23;UBERON:0005058!1.55e-07!23;UBERON:0003351!1.55e-07!23;UBERON:0009113!1.55e-07!23;UBERON:0003295!1.55e-07!23;UBERON:0009722!1.55e-07!23;UBERON:0005562!1.55e-07!23;UBERON:0007690!1.55e-07!23;UBERON:0007023!2.36e-07!51;UBERON:0000153!4.77e-07!94;UBERON:0007811!5.49e-07!86 | |ontology_enrichment_uberon=UBERON:0000477!5.44e-09!154;UBERON:0003408!5.25e-08!24;UBERON:0006562!7.43e-08!24;UBERON:0001557!7.43e-08!24;UBERON:0001042!7.43e-08!24;UBERON:0008814!7.43e-08!24;UBERON:0009145!7.43e-08!24;UBERON:0002370!1.55e-07!23;UBERON:0000974!1.55e-07!23;UBERON:0004807!1.55e-07!23;UBERON:0005058!1.55e-07!23;UBERON:0003351!1.55e-07!23;UBERON:0009113!1.55e-07!23;UBERON:0003295!1.55e-07!23;UBERON:0009722!1.55e-07!23;UBERON:0005562!1.55e-07!23;UBERON:0007690!1.55e-07!23;UBERON:0007023!2.36e-07!51;UBERON:0000153!4.77e-07!94;UBERON:0007811!5.49e-07!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003408,5.25e-08,24;UBERON:0006562,7.43e-08,24;UBERON:0001557,7.43e-08,24;UBERON:0001042,7.43e-08,24;UBERON:0008814,7.43e-08,24;UBERON:0009145,7.43e-08,24;UBERON:0002370,1.55e-07,23;UBERON:0000974,1.55e-07,23;UBERON:0004807,1.55e-07,23;UBERON:0005058,1.55e-07,23;UBERON:0003351,1.55e-07,23;UBERON:0009113,1.55e-07,23;UBERON:0003295,1.55e-07,23;UBERON:0009722,1.55e-07,23;UBERON:0005562,1.55e-07,23;UBERON:0007690,1.55e-07,23;UBERON:0007023,2.36e-07,51;UBERON:0000077,2.74e-07,35 | |||
|phase1_expression=15.2141404749554,16.0528687514106,15.4699741392442,16.9379958331825,19.5349334679075,8.89760141133016,12.8486952327539,48.4212462905911,57.864164804335,46.1107116854327,41.4347483105722,34.3020283679947,58.5506496364724,56.2113187554153,18.9872564234928,23.8920815519995,17.4890469532037,43.2183166540786,50.5952260005176,36.0731204028326,23.6420346619974,26.9078477754399,29.7767759618386,21.4389846543165,20.188016733911,12.6331032105304,11.630573896295,14.8675150553263,22.4227634958521,14.1136872665561,13.7472916606289,19.6859508772486,22.7573971406291,0,11.8429164098023,7.97926297720763,10.0042984568561,21.7636447983192,15.626706890476,20.4174260149781,16.4704816648684,15.7100461540443,23.3044969454954,27.8231967726026,27.574525291708,35.6080699193662,3.9119567217402,5.01457859675027,9.44650585758229,13.026803237977,13.5786828976602,1.43752564364972,61.9117816353047,63.8318684969983,64.1939156362106,17.2363822144084,22.9226751951005,23.2052441524849,13.3528864167335,15.869729378161,10.1413024560989,7.45457970552091,12.450127145556,7.19919773825119,3.9554654502679,4.9733608046227,4.49400165777607,5.76327457982332,13.894408049336,11.340498819862,10.9368979902719,11.4260393761521,13.4729809980484,13.229006315215,13.6100568845896,10.1114066527102,14.3150645299205,36.6462660304489,45.1603207773356,15.6944682398931,17.4741399280602,21.3574481928272,29.5933978941464,42.207195752376,42.9363076252836,12.9636577608414,27.7624777558251,18.4535451367048,14.9937862799704,17.3058872644539,35.3634676216047,17.2084775396277,20.3991400112325,15.6513925574967,31.8390444549358,42.1145273871495,23.1733293217391,20.1107780642108,26.2383864648897,16.9602995764963,12.3942209403479,34.6481489018658,17.8363667794652,7.11066703153331,17.3192832808971,17.4818307177818,20.2209778005913,23.7502469815645,79.2349923960345,32.0635020380021,12.6644288539279,12.7875500891099,21.2166257475574,23.6634545667617,34.4534911907615,22.6199864393416,44.0007042567185,39.0418263683761,19.4614321428972,20.544389943321,25.6176161414057,24.2437626567611,14.9113408974498,39.5254075965589,43.1460216035717,21.2029355823131,21.8063526600775,17.3971791988088,23.1267813272978,46.1355169366854,26.0775343606617,22.8690920845413,42.4131341269155,46.7959286914505,39.0641523771973,50.4570328140726,24.0340898686746,33.3410681235049,42.710146175291,34.9333480771547,17.3060189140396,13.104419952708,17.2859644613135,23.9620660358787,27.6228186554391,23.9572656932669,23.2380276908127,33.8901415668111,13.5807835547691,20.9907748986279,23.0495972654773,17.9740500590611,25.580346928755,27.163668988729,32.719359688863,23.8841120182192,14.0442637462647,17.4996576838006,19.0389544595047,17.8128164380532,21.8109235782419,22.1476335597048,23.2009840873506,25.7761143589099,27.1510118681786,28.3691412595498,20.9253253091703,39.4666857201033,32.0891707331287,34.6393349206891,31.7789733419754,29.6785974473425,28.9806152184187,33.1489854338118,46.6843685812362,17.9054025539955,26.7639214216876,17.7181879664575,15.1434657880016,21.3657738111603,19.5878541209582,16.5380490191141,18.2349995952794,21.6857213768317,20.8792787079585,23.5519505255336,24.3795152536261,19.6966907320739,25.3453313254856,33.2563181202062,27.0172562343368,21.9055400579804,13.2767530667157,16.7945313536301,22.5415471346161,15.2738495883986,22.1105835371093,27.8439204964565,27.2549475005549,28.6363687080428,35.4817124921507,39.7338867828198,24.0126627940591,15.8502850430289,18.0834275504147,15.9652099793246,17.6488305607998,17.1235783424216,18.5876871800436,21.5772103088108,31.1299635408068,21.6903516418584,18.6898668485561,33.4926852901653,20.9065240986756,24.5001511608698,26.1920223741992,29.9114983245288,30.853782757823,15.5382957651798,19.066902243717,20.708900464573,20.4180516010997,26.8010011906905,28.0891496245496,28.099245291523,25.0639879128844,22.589398344175,29.0207678956627,27.2013102428125,28.8383919716046,31.8227928879325,21.1107797514981,21.7562273527484,42.2917274796371,51.0482980663755,43.3486592967038,44.6576525916294,20.8197380628378,29.0341566285029,17.9839685067266,18.7410597262386,19.8189525914175,20.3123478259669,19.6062833192507,18.9661275628518,17.4068601720205,16.9508397588561,19.7643888973262,47.2342335140056,28.2460769564455,15.1355763117167,30.4598613991187,28.044920905331,25.2215762845929,17.4802058031587,19.0463840887793,21.8781892516842,14.7650946440386,19.0609791725235,25.5844010236539,25.8108947929029,26.0243086220847,24.6508671189936,9.48767477174989,20.6271086496374,53.1085784975909,12.2441543941291,15.264324686365,20.1476812929697,29.2611385509751,24.6148968290857,30.1124707701881,28.0107753185431,31.2113371724735,20.9713750155182,34.622958494629,21.4352128823924,32.1314209124852,31.4230338875692,27.5750114647245,28.7246574553857,19.5292160542,39.4955893282386,20.3336348149445,18.9875918526165,22.9641213938442,24.6762678676145,23.5114071680163,24.4792645330979,35.5254918687158,31.489076772823,36.0701931629546,19.0934123603023,14.5514557047322,26.838169660744,23.3291536175091,20.2815647134035,19.4342681734098,28.4563770871972,27.4409473008115,20.6787194167383,31.3668235366139,42.8724126029979,14.0923234671048,18.8390848015413,17.8695169693665,17.1117045742762,20.1489324625261,19.0920421804579,31.9211689116451,20.1816796508123,24.5370865956163,21.2594026326885,28.5149706195287,40.4494234404068,20.8806971748869,23.0072544049213,27.6731352942703,30.4345382634718,33.5771489580338,44.7127072214284,40.7623095001833,48.8677617749034,46.1051180262749,50.1106140130097,39.762815341819,49.2604629198487,61.2434967431421,34.0095575422817,17.5368903165511,19.1987653144278,19.4746154982331,27.432922352571,24.3987218086537,27.2895920158225,30.0115730710692,43.1352009470412,33.885110557024,38.6673198666029,29.7905666988486,35.9173151098307,31.5137959094495,42.3020582538232,45.9015300157628,37.3766598676103,50.7519498062309,37.278742446131,10.4825221060018,22.7444177838588,20.1465654789878,22.6089246873513,15.0921477092147,10.8467669985508,24.6693867859793,16.8948746935893,20.5388294138762,19.96307972934,19.5179060915485,22.8237873077152,21.2566221956633,19.7837720931046,20.5618978861096,25.2435656380029,20.9750629960188,21.4129234714713,23.4888963457885,24.7294185825788,17.8292011240416,17.9250564220931,21.6976932852062,19.476419828732,23.621454484248,17.515223833577,21.0367168803688,23.413204317968,19.4199882799582,22.4456908663095,27.2860541685601,20.6859412988683,21.6892452879935,18.127610418758,19.8693809310576,20.7342779688495,23.8610240614317,23.6358159453128,29.6496914706707,22.9415075884296,20.6362373702175 | |phase1_expression=15.2141404749554,16.0528687514106,15.4699741392442,16.9379958331825,19.5349334679075,8.89760141133016,12.8486952327539,48.4212462905911,57.864164804335,46.1107116854327,41.4347483105722,34.3020283679947,58.5506496364724,56.2113187554153,18.9872564234928,23.8920815519995,17.4890469532037,43.2183166540786,50.5952260005176,36.0731204028326,23.6420346619974,26.9078477754399,29.7767759618386,21.4389846543165,20.188016733911,12.6331032105304,11.630573896295,14.8675150553263,22.4227634958521,14.1136872665561,13.7472916606289,19.6859508772486,22.7573971406291,0,11.8429164098023,7.97926297720763,10.0042984568561,21.7636447983192,15.626706890476,20.4174260149781,16.4704816648684,15.7100461540443,23.3044969454954,27.8231967726026,27.574525291708,35.6080699193662,3.9119567217402,5.01457859675027,9.44650585758229,13.026803237977,13.5786828976602,1.43752564364972,61.9117816353047,63.8318684969983,64.1939156362106,17.2363822144084,22.9226751951005,23.2052441524849,13.3528864167335,15.869729378161,10.1413024560989,7.45457970552091,12.450127145556,7.19919773825119,3.9554654502679,4.9733608046227,4.49400165777607,5.76327457982332,13.894408049336,11.340498819862,10.9368979902719,11.4260393761521,13.4729809980484,13.229006315215,13.6100568845896,10.1114066527102,14.3150645299205,36.6462660304489,45.1603207773356,15.6944682398931,17.4741399280602,21.3574481928272,29.5933978941464,42.207195752376,42.9363076252836,12.9636577608414,27.7624777558251,18.4535451367048,14.9937862799704,17.3058872644539,35.3634676216047,17.2084775396277,20.3991400112325,15.6513925574967,31.8390444549358,42.1145273871495,23.1733293217391,20.1107780642108,26.2383864648897,16.9602995764963,12.3942209403479,34.6481489018658,17.8363667794652,7.11066703153331,17.3192832808971,17.4818307177818,20.2209778005913,23.7502469815645,79.2349923960345,32.0635020380021,12.6644288539279,12.7875500891099,21.2166257475574,23.6634545667617,34.4534911907615,22.6199864393416,44.0007042567185,39.0418263683761,19.4614321428972,20.544389943321,25.6176161414057,24.2437626567611,14.9113408974498,39.5254075965589,43.1460216035717,21.2029355823131,21.8063526600775,17.3971791988088,23.1267813272978,46.1355169366854,26.0775343606617,22.8690920845413,42.4131341269155,46.7959286914505,39.0641523771973,50.4570328140726,24.0340898686746,33.3410681235049,42.710146175291,34.9333480771547,17.3060189140396,13.104419952708,17.2859644613135,23.9620660358787,27.6228186554391,23.9572656932669,23.2380276908127,33.8901415668111,13.5807835547691,20.9907748986279,23.0495972654773,17.9740500590611,25.580346928755,27.163668988729,32.719359688863,23.8841120182192,14.0442637462647,17.4996576838006,19.0389544595047,17.8128164380532,21.8109235782419,22.1476335597048,23.2009840873506,25.7761143589099,27.1510118681786,28.3691412595498,20.9253253091703,39.4666857201033,32.0891707331287,34.6393349206891,31.7789733419754,29.6785974473425,28.9806152184187,33.1489854338118,46.6843685812362,17.9054025539955,26.7639214216876,17.7181879664575,15.1434657880016,21.3657738111603,19.5878541209582,16.5380490191141,18.2349995952794,21.6857213768317,20.8792787079585,23.5519505255336,24.3795152536261,19.6966907320739,25.3453313254856,33.2563181202062,27.0172562343368,21.9055400579804,13.2767530667157,16.7945313536301,22.5415471346161,15.2738495883986,22.1105835371093,27.8439204964565,27.2549475005549,28.6363687080428,35.4817124921507,39.7338867828198,24.0126627940591,15.8502850430289,18.0834275504147,15.9652099793246,17.6488305607998,17.1235783424216,18.5876871800436,21.5772103088108,31.1299635408068,21.6903516418584,18.6898668485561,33.4926852901653,20.9065240986756,24.5001511608698,26.1920223741992,29.9114983245288,30.853782757823,15.5382957651798,19.066902243717,20.708900464573,20.4180516010997,26.8010011906905,28.0891496245496,28.099245291523,25.0639879128844,22.589398344175,29.0207678956627,27.2013102428125,28.8383919716046,31.8227928879325,21.1107797514981,21.7562273527484,42.2917274796371,51.0482980663755,43.3486592967038,44.6576525916294,20.8197380628378,29.0341566285029,17.9839685067266,18.7410597262386,19.8189525914175,20.3123478259669,19.6062833192507,18.9661275628518,17.4068601720205,16.9508397588561,19.7643888973262,47.2342335140056,28.2460769564455,15.1355763117167,30.4598613991187,28.044920905331,25.2215762845929,17.4802058031587,19.0463840887793,21.8781892516842,14.7650946440386,19.0609791725235,25.5844010236539,25.8108947929029,26.0243086220847,24.6508671189936,9.48767477174989,20.6271086496374,53.1085784975909,12.2441543941291,15.264324686365,20.1476812929697,29.2611385509751,24.6148968290857,30.1124707701881,28.0107753185431,31.2113371724735,20.9713750155182,34.622958494629,21.4352128823924,32.1314209124852,31.4230338875692,27.5750114647245,28.7246574553857,19.5292160542,39.4955893282386,20.3336348149445,18.9875918526165,22.9641213938442,24.6762678676145,23.5114071680163,24.4792645330979,35.5254918687158,31.489076772823,36.0701931629546,19.0934123603023,14.5514557047322,26.838169660744,23.3291536175091,20.2815647134035,19.4342681734098,28.4563770871972,27.4409473008115,20.6787194167383,31.3668235366139,42.8724126029979,14.0923234671048,18.8390848015413,17.8695169693665,17.1117045742762,20.1489324625261,19.0920421804579,31.9211689116451,20.1816796508123,24.5370865956163,21.2594026326885,28.5149706195287,40.4494234404068,20.8806971748869,23.0072544049213,27.6731352942703,30.4345382634718,33.5771489580338,44.7127072214284,40.7623095001833,48.8677617749034,46.1051180262749,50.1106140130097,39.762815341819,49.2604629198487,61.2434967431421,34.0095575422817,17.5368903165511,19.1987653144278,19.4746154982331,27.432922352571,24.3987218086537,27.2895920158225,30.0115730710692,43.1352009470412,33.885110557024,38.6673198666029,29.7905666988486,35.9173151098307,31.5137959094495,42.3020582538232,45.9015300157628,37.3766598676103,50.7519498062309,37.278742446131,10.4825221060018,22.7444177838588,20.1465654789878,22.6089246873513,15.0921477092147,10.8467669985508,24.6693867859793,16.8948746935893,20.5388294138762,19.96307972934,19.5179060915485,22.8237873077152,21.2566221956633,19.7837720931046,20.5618978861096,25.2435656380029,20.9750629960188,21.4129234714713,23.4888963457885,24.7294185825788,17.8292011240416,17.9250564220931,21.6976932852062,19.476419828732,23.621454484248,17.515223833577,21.0367168803688,23.413204317968,19.4199882799582,22.4456908663095,27.2860541685601,20.6859412988683,21.6892452879935,18.127610418758,19.8693809310576,20.7342779688495,23.8610240614317,23.6358159453128,29.6496914706707,22.9415075884296,20.6362373702175 | ||
|short_description=p1@Rab3gap1 | |short_description=p1@Rab3gap1 | ||
}} | }} |
Latest revision as of 07:23, 26 September 2015
Short description: | p1@Rab3gap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab3gap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:614 |
Association with transcript: | 0bp_to_ENSMUST00000142662_5end |
EntrezGene: | Rab3gap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.30e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
gland of gut | 5.25e-08 | 24 |
pharynx | 7.43e-08 | 24 |
upper respiratory tract | 7.43e-08 | 24 |
chordate pharynx | 7.43e-08 | 24 |
pharyngeal arch system | 7.43e-08 | 24 |
pharyngeal region of foregut | 7.43e-08 | 24 |
thymus | 1.55e-07 | 23 |
neck | 1.55e-07 | 23 |
respiratory system epithelium | 1.55e-07 | 23 |
hemolymphoid system gland | 1.55e-07 | 23 |
pharyngeal epithelium | 1.55e-07 | 23 |
thymic region | 1.55e-07 | 23 |
pharyngeal gland | 1.55e-07 | 23 |
entire pharyngeal arch endoderm | 1.55e-07 | 23 |
thymus primordium | 1.55e-07 | 23 |
early pharyngeal endoderm | 1.55e-07 | 23 |
adult organism | 2.36e-07 | 51 |
mixed endoderm/mesoderm-derived structure | 2.74e-07 | 35 |