Personal tools

FFCP PHASE1:Mm9::chr18:56559971..56560016,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=107022
|EntrezGene=107022
|HGNC=
|HGNC=
|MCL_coexpression_id=12
|TSSclassifier=NA
|UniProt=E9QK68,Q9D2W5,Q6PEM6
|UniProt=E9QK68,Q9D2W5,Q6PEM6
|association_with_transcript=0bp_to_ENSMUST00000116636,uc008eyj.1,uc008eyk.1_5end
|association_with_transcript=0bp_to_ENSMUST00000116636,uc008eyj.1,uc008eyk.1_5end
|cluster_id=chr18:56559971..56560016,+
|description=CAGE_peak_3_at_Gramd3_5end
|description=CAGE_peak_3_at_Gramd3_5end
|id=chr18:56559971..56560016,+
|id=chr18:56559971..56560016,+
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=CL:0002563,4.58e-07,9;CL:0002251,4.58e-07,9
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000160!1.48e-24!43;UBERON:0005409!5.35e-22!59;UBERON:0004119!6.43e-22!130;UBERON:0000925!6.43e-22!130;UBERON:0006595!6.43e-22!130;UBERON:0001007!9.66e-22!128;UBERON:0001555!9.66e-22!128;UBERON:0007026!9.66e-22!128;UBERON:0004921!2.39e-20!126;UBERON:0004185!2.39e-20!126;UBERON:0009854!2.99e-10!23;UBERON:0009856!2.99e-10!23;UBERON:0000344!3.58e-10!15;UBERON:0005177!7.05e-10!85;UBERON:0002107!1.24e-09!22;UBERON:0007499!1.24e-09!22;UBERON:0006925!1.24e-09!22;UBERON:0009497!1.24e-09!22;UBERON:0000015!1.24e-09!22;UBERON:0002423!1.24e-09!22;UBERON:0006235!1.24e-09!22;UBERON:0008835!1.24e-09!22;UBERON:0003894!1.24e-09!22;UBERON:0004161!1.24e-09!22;UBERON:0008836!1.24e-09!22;UBERON:0002108!4.38e-09!16;UBERON:0001242!9.73e-09!13;UBERON:0000060!9.73e-09!13;UBERON:0001262!9.73e-09!13;UBERON:0004786!9.73e-09!13;UBERON:0005172!2.75e-08!49;UBERON:0005173!2.75e-08!49;UBERON:0002417!2.75e-08!49;UBERON:0000916!2.75e-08!49;UBERON:0002365!2.87e-07!25;UBERON:0002330!2.87e-07!25;UBERON:0009569!3.05e-07!66;UBERON:0001045!3.19e-07!13
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.71e-22,31;UBERON:0005409,1.32e-19,47;UBERON:0001007,2.10e-13,116;UBERON:0001555,2.10e-13,116;UBERON:0007026,2.10e-13,116;UBERON:0004119,8.91e-13,118;UBERON:0000925,8.91e-13,118;UBERON:0006595,8.91e-13,118;UBERON:0004921,3.50e-12,114;UBERON:0009854,4.93e-12,23;UBERON:0009856,4.93e-12,23;UBERON:0000344,6.12e-12,15;UBERON:0002107,2.73e-11,22;UBERON:0007499,2.73e-11,22;UBERON:0006925,2.73e-11,22;UBERON:0009497,2.73e-11,22;UBERON:0000015,2.73e-11,22;UBERON:0002423,2.73e-11,22;UBERON:0006235,2.73e-11,22;UBERON:0008835,2.73e-11,22;UBERON:0003894,2.73e-11,22;UBERON:0004161,2.73e-11,22;UBERON:0008836,2.73e-11,22;UBERON:0001242,3.26e-10,13;UBERON:0001262,3.26e-10,13;UBERON:0004786,3.26e-10,13;UBERON:0002365,5.38e-09,25;UBERON:0002330,5.38e-09,25;UBERON:0005177,6.91e-09,79;UBERON:0005172,1.12e-08,49;UBERON:0005173,1.12e-08,49;UBERON:0002417,1.12e-08,49;UBERON:0000916,1.12e-08,49;UBERON:0001264,1.20e-07,12;UBERON:0003350,4.58e-07,9;UBERON:0004808,4.58e-07,9;UBERON:0001277,4.58e-07,9;UBERON:0002100,7.62e-07,90
|phase1_expression=0,184.607990641222,149.239750519768,263.748792259556,262.469362491886,52.8819706522453,60.0384486330501,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,150.552869848596,158.06299465528,133.7960476388,122.336406909177,118.078235511867,129.595972069247,99.2998711254127,60.7541599195535,0,0,0,5.77703239502549,12.8000676926039,10.0042984568561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0.56276261003168,0.763991238884051,0,0.142371680799103,0,0,0,3.76823835312181,33.5565312022741,14.9593693415705,40.4777393728363,68.8763002494529,80.6448396775204,26.2631065646376,0,0,0,0,0,0,0,0.865964164044856,0.506719730950197,1.51657333504435,45.3310002484668,0.258937883647172,0.148442139064825,0.173485326766136,3.34912026143355,2.7673859670727,1.50722640552623,0.587943535678524,1.0053327306374,2.47194967734374,0.144599356919912,0.884610551949874,0,0,0,83.876292548155,0.292780797011547,0,149.186920241817,0,0,0,0.149790639404823,0,0,0.695297280769106,0.255715457330331,0,0.162241263067758,0.203678727700633,2.48813941220186,11.625246887949,0,0,0,0,1.20563854268572,0,0,0,0.517406741478031,0,0,0,0,0,0,0,0.398068533636986,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0.536825675041487,0,0,442.430750415306,127.994074265155,1.06644125267617,1.62565670302307,14.1754207454303,46.3872106633688,56.4840231365971,82.7481473589632,156.594590309689,82.0200794525574,80.4272668160862,77.9909370401311,67.2626100560964,133.924091889479,175.720234548126,167.876093353432,1.70701110857774,1.48523066392647,1.1270773567308,1.62921062276251,2.90928730751439,2.52488951605147,3.60448261608267,13.8753539100826,17.8978549739167,16.7820142933649,66.9982937216956,2.16898637430922,3.53806191203765,5.62155280962134,6.49152388443209,12.7823894668781,23.680204215672,44.8805974423265,6.16113861745134,19.7684217495419,20.1275489138296,44.2847727725519,26.8352398878522,43.4435670069032,57.5865697405338,72.8489717258684,1.66277871149944,0.37898282354097,0.325929952884052,0,0.234690248288502,0.167506257441816,0.476087281772027,0,0.472905432318573,0.221464689648775,0.318909537314974,0.327726629431476,0.690739927463582,0.433947175744535,0,0,0,0,0.642202359951168,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,1.28528526568723,0.709700426041343,0.890328018336276,0.325773918707152,3.13443233647817,43.8058956521877,10.9251286269742,19.9533547596736,26.5933162455816,26.2818684663888,25.8245524272899,32.8203932323641,24.3567598749929,22.8158322166222,13.9056173491759,36.8965130012496,51.5677716240934,0.680879211507576,0.36012218806262,0.517434735131018,0,0.354680467284547,0.178368817602071,0.164549020602121,0,0.704015124191131,0.63549621259146,6.17479514553893,0,0,0,0,0.164140899745061,117.1752963252,0.18542530201051,0,0.82554747185289,0,0,0,0,0,0,0,47.7335309007557,0,6.09958401380546,11.2325554454673,5.22720740036172,12.0099410060398,7.95699643670442,10.579642332843,24.0815466625307,66.4924812986897,0,0,0,0,0,0,0,0,0.651021924219751,0,0,0,0,0,0,0.25984164595559,0.537080087002444,0.198681354781265,0.721172697119813,0,0.504832249740738,0.304827226619999,0.201652370273681,0.38983152295901,0.192423683280659,0.233753804363138,0,0,0,0,1.9318959403219,7.13193406714492,2.74727436400898,2.35805216986972,2.00628841614145,0,0.460325236507177,0,0,0,0,0.675022500231806,0,0.453142408984205,0.51776031175182,0.207574695168353,0.399024873401031,0.512200817262403,3.64660075602441,1.46729213839588,4.77993121970037,10.2233494788743,8.85950746127245,11.5530915453053,7.07552192938633,9.37873409593887,6.41329560712659,8.80230170216895,8.06716920301353,8.95993315707567,8.09699275181225,5.2147946675185,8.29509647993932,7.00546031365621,9.71512872887022,8.9146005620208,6.38912902173615,6.91464950847231,8.86613141457204,7.9992973353031,7.69992931814256,6.95126296916536,6.05060336307039,9.50628796921032,7.85599180320834,7.3553711236988,7.19082721341613,5.72923460437565,6.97215785336847,7.9091710502268,0,10.7608539884888,6.23126056740065,0.191288332068843,0.220591419119515,0
|phase1_expression=0,184.607990641222,149.239750519768,263.748792259556,262.469362491886,52.8819706522453,60.0384486330501,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,150.552869848596,158.06299465528,133.7960476388,122.336406909177,118.078235511867,129.595972069247,99.2998711254127,60.7541599195535,0,0,0,5.77703239502549,12.8000676926039,10.0042984568561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0.56276261003168,0.763991238884051,0,0.142371680799103,0,0,0,3.76823835312181,33.5565312022741,14.9593693415705,40.4777393728363,68.8763002494529,80.6448396775204,26.2631065646376,0,0,0,0,0,0,0,0.865964164044856,0.506719730950197,1.51657333504435,45.3310002484668,0.258937883647172,0.148442139064825,0.173485326766136,3.34912026143355,2.7673859670727,1.50722640552623,0.587943535678524,1.0053327306374,2.47194967734374,0.144599356919912,0.884610551949874,0,0,0,83.876292548155,0.292780797011547,0,149.186920241817,0,0,0,0.149790639404823,0,0,0.695297280769106,0.255715457330331,0,0.162241263067758,0.203678727700633,2.48813941220186,11.625246887949,0,0,0,0,1.20563854268572,0,0,0,0.517406741478031,0,0,0,0,0,0,0,0.398068533636986,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0.536825675041487,0,0,442.430750415306,127.994074265155,1.06644125267617,1.62565670302307,14.1754207454303,46.3872106633688,56.4840231365971,82.7481473589632,156.594590309689,82.0200794525574,80.4272668160862,77.9909370401311,67.2626100560964,133.924091889479,175.720234548126,167.876093353432,1.70701110857774,1.48523066392647,1.1270773567308,1.62921062276251,2.90928730751439,2.52488951605147,3.60448261608267,13.8753539100826,17.8978549739167,16.7820142933649,66.9982937216956,2.16898637430922,3.53806191203765,5.62155280962134,6.49152388443209,12.7823894668781,23.680204215672,44.8805974423265,6.16113861745134,19.7684217495419,20.1275489138296,44.2847727725519,26.8352398878522,43.4435670069032,57.5865697405338,72.8489717258684,1.66277871149944,0.37898282354097,0.325929952884052,0,0.234690248288502,0.167506257441816,0.476087281772027,0,0.472905432318573,0.221464689648775,0.318909537314974,0.327726629431476,0.690739927463582,0.433947175744535,0,0,0,0,0.642202359951168,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,1.28528526568723,0.709700426041343,0.890328018336276,0.325773918707152,3.13443233647817,43.8058956521877,10.9251286269742,19.9533547596736,26.5933162455816,26.2818684663888,25.8245524272899,32.8203932323641,24.3567598749929,22.8158322166222,13.9056173491759,36.8965130012496,51.5677716240934,0.680879211507576,0.36012218806262,0.517434735131018,0,0.354680467284547,0.178368817602071,0.164549020602121,0,0.704015124191131,0.63549621259146,6.17479514553893,0,0,0,0,0.164140899745061,117.1752963252,0.18542530201051,0,0.82554747185289,0,0,0,0,0,0,0,47.7335309007557,0,6.09958401380546,11.2325554454673,5.22720740036172,12.0099410060398,7.95699643670442,10.579642332843,24.0815466625307,66.4924812986897,0,0,0,0,0,0,0,0,0.651021924219751,0,0,0,0,0,0,0.25984164595559,0.537080087002444,0.198681354781265,0.721172697119813,0,0.504832249740738,0.304827226619999,0.201652370273681,0.38983152295901,0.192423683280659,0.233753804363138,0,0,0,0,1.9318959403219,7.13193406714492,2.74727436400898,2.35805216986972,2.00628841614145,0,0.460325236507177,0,0,0,0,0.675022500231806,0,0.453142408984205,0.51776031175182,0.207574695168353,0.399024873401031,0.512200817262403,3.64660075602441,1.46729213839588,4.77993121970037,10.2233494788743,8.85950746127245,11.5530915453053,7.07552192938633,9.37873409593887,6.41329560712659,8.80230170216895,8.06716920301353,8.95993315707567,8.09699275181225,5.2147946675185,8.29509647993932,7.00546031365621,9.71512872887022,8.9146005620208,6.38912902173615,6.91464950847231,8.86613141457204,7.9992973353031,7.69992931814256,6.95126296916536,6.05060336307039,9.50628796921032,7.85599180320834,7.3553711236988,7.19082721341613,5.72923460437565,6.97215785336847,7.9091710502268,0,10.7608539884888,6.23126056740065,0.191288332068843,0.220591419119515,0
|short_description=p3@Gramd3
|short_description=p3@Gramd3
}}
}}

Latest revision as of 11:54, 1 October 2015

Short description:p3@Gramd3
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_3_at_Gramd3_5end
Coexpression cluster:MCL_coexpression_mm9:12
Association with transcript: 0bp_to_ENSMUST00000116636, uc008eyj.1, uc008eyk.1_5end
EntrezGene:Gramd3
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p3@Gramd3

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I5184.61
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I6149.24
CD326+ enterocyte, pool1.CNhs13542.11848-124I3263.75
CD326+ enterocyte, pool2.CNhs13197.11849-124I4262.47
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I752.88
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I860.04
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A32.47
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D1150.55
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D2158.06
GP2+ M cell, pool1.CNhs13228.11845-124H9133.80
GP2+ M cell, pool2.CNhs13231.11846-124I1122.34
GP2+ M cell, pool3.CNhs13240.11847-124I2118.08
Ileum epithelium, pool1.CNhs13199.10252-104B9129.60
Ileum epithelium, pool2.CNhs13232.10253-104C199.30
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C860.75
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F55.78
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F612.80
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F710.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C30.00
Mouse Granule cells, donor2.CNhs12357.11731-123E30.00
Mouse Granule cells, donor3.CNhs12108.11636-122C70.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.00
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.00
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.00
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.00
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.00
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.13
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.00
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.00
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.00
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.56
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.76
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.14
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.00
Mouse Schwann, donor1.CNhs12507.11728-123D90.00
Mouse Schwann, donor2.CNhs12573.11746-123F90.00
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G33.77
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F733.56
Mouse hepatocyte, donor1.CNhs13078.11714-123C414.96
Mouse hepatocyte, donor3.CNhs12615.11637-122C840.48
Mouse hepatocyte, donor6.CNhs13090.11822-124F468.88
Mouse hepatocyte, donor8.CNhs13091.11824-124F680.64
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A726.26
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.00
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.87
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.51
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G31.52
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B645.33
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D70.15
adrenal gland, embryo E14.CNhs11038.406-44C50.17
adrenal gland, embryo E16.CNhs11004.1254-43D63.35
adrenal gland, embryo E17.CNhs11043.1263-45I12.77
adrenal gland, embryo E18.CNhs11026.1262-18F51.51
adrenal gland, neonate N00.CNhs11191.1311-23C10.59
adrenal gland, neonate N25.CNhs11223.1377-27I31.01
amnion, adult pregnant day17.5.CNhs10488.583-22A82.47
aorta, adult.CNhs10498.46-23H10.14
bone (os femoris), adult.CNhs10483.56-12G20.88
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H483.88
cerebellum, adult.CNhs10494.15-8B20.29
cerebellum, neonate N30.CNhs11135.1395-42I20.00
colon, adult.CNhs10468.36-18H7149.19
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A40.15
corpus striatum, adult.CNhs10487.19-21D80.00
corpus striatum, neonate N00.CNhs11226.630-43F10.00
cortex, adult.CNhs10473.12-14D50.70
cortex, neonate N30.CNhs11107.1392-42F20.26
diencephalon, adult.CNhs10482.20-12F20.00
diencephalon, neonate N30.CNhs11201.1388-42B20.16
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.20
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A22.49
epididymis, adult.CNhs10490.58-23B211.63
eyeball, adult.CNhs10484.31-12G40.00
eyeball, embryo E12.CNhs11016.345-16C60.00
eyeball, embryo E14.CNhs10521.399-16E20.00
eyeball, embryo E15.CNhs10593.426-16C90.00
eyeball, embryo E17.CNhs11023.1261-18D41.21
eyeball, neonate N00.CNhs11207.633-15C60.00
eyeball, neonate N01.CNhs11140.1532-43E70.00
eyeball, neonate N02.CNhs11205.1551-44G80.00
eyeball, neonate N16.CNhs11188.777-19A20.52
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.00
forelimb, embryo E13.CNhs10589.384-1E20.00
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I60.40
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.00
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.00
heart, embryo E15.CNhs11017.431-16C80.20
heart, embryo E16.CNhs11021.457-17C60.00
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.00
heart, neonate N03.CNhs11221.1349-25I20.00
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.00
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.54
hippocampus, adult.CNhs10478.13-16E80.00
hippocampus, neonate N00.CNhs11228.627-43G10.00
intestinal mucosa, adult.CNhs10506.860-29I3442.43
intestine, adult.CNhs10496.178-9A3127.99
intestine, embryo E12.CNhs11019.1251-16I51.07
intestine, embryo E13.CNhs11010.381-16D51.63
intestine, embryo E15.CNhs10602.976-16D814.18
intestine, embryo E16.CNhs10585.463-22H446.39
intestine, embryo E17.CNhs10582.482-18D356.48
intestine, embryo E18.CNhs10526.1289-20F782.75
intestine, neonate N00.CNhs11126.644-26D1156.59
intestine, neonate N01.CNhs11192.1322-23E982.02
intestine, neonate N06.CNhs11102.688-20B880.43
intestine, neonate N07.CNhs11095.720-20F277.99
intestine, neonate N10.CNhs11098.755-23A567.26
intestine, neonate N20.CNhs11187.827-18D1133.92
intestine, neonate N25.CNhs11121.1352-25E3175.72
intestine, neonate N30.CNhs11131.1384-42G1167.88
kidney, embryo E14.CNhs10606.411-4I91.71
kidney, embryo E15.CNhs10997.434-16F81.49
kidney, embryo E16.CNhs10584.464-22A51.13
kidney, embryo E17.CNhs11028.483-18I21.63
kidney, embryo E18.CNhs11001.1288-20C72.91
kidney, neonate N00.CNhs11214.646-21G72.52
kidney, neonate N10.CNhs11206.758-6D53.60
kidney, neonate N20.CNhs11113.832-19I113.88
kidney, neonate N25.CNhs11122.1353-25F317.90
kidney, neonate N30.CNhs11203.1385-42H116.78
liver, adult pregnant day01.CNhs10466.508-5B267.00
liver, embryo E12.CNhs10601.355-15F82.17
liver, embryo E13.CNhs10524.378-3H63.54
liver, embryo E14.CNhs10594.409-16E15.62
liver, embryo E15.CNhs10520.433-16D76.49
liver, embryo E16.CNhs10523.462-17F512.78
liver, embryo E17.CNhs10510.481-18A323.68
liver, embryo E18.CNhs10579.499-43G444.88
liver, neonate N00.CNhs11117.641-24F46.16
liver, neonate N03.CNhs11123.1345-25G219.77
liver, neonate N06.CNhs11101.684-20A820.13
liver, neonate N07.CNhs11103.716-20H244.28
liver, neonate N10.CNhs11115.751-24B926.84
liver, neonate N20.CNhs11220.823-25A343.44
liver, neonate N25.CNhs11198.1368-26H157.59
liver, neonate N30.CNhs11106.1382-42D172.85
lung, adult.CNhs10474.28-22B11.66
lung, embryo E12.CNhs10522.354-16G20.38
lung, embryo E14.CNhs10604.404-26F80.33
lung, embryo E15.CNhs11020.432-17C50.00
lung, embryo E16.CNhs10998.458-17B60.23
lung, embryo E17.CNhs10605.480-44A60.17
lung, embryo E18.CNhs10583.1287-20I60.48
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.47
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.32
lung, neonate N20.CNhs11109.822-18A40.33
lung, neonate N25.CNhs11119.1359-25C70.69
lung, neonate N30.CNhs11133.1394-42H20.43
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C20.64
medulla oblongata, neonate N30.CNhs11200.1396-42A30.23
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I91.29
ovary, adult.CNhs10507.91-2I70.71
ovary, embryo E18.CNhs11040.505-44H70.89
ovary, neonate N00.CNhs11217.1299-22I40.33
oviduct, adult pregnant day01.CNhs10500.988-6G63.13
pancreas, adult.CNhs10486.34-16E443.81
pancreas, embryo E14.CNhs11012.405-44F410.93
pancreas, embryo E15.CNhs11042.1556-45F219.95
pancreas, embryo E16.CNhs11003.460-26E526.59
pancreas, embryo E17.CNhs10599.1558-45G326.28
pancreas, embryo E18.CNhs10580.1535-43I725.82
pancreas, neonate N00.CNhs11105.645-26G932.82
pancreas, neonate N01.CNhs11138.1531-43D724.36
pancreas, neonate N02.CNhs11139.1539-43D822.82
pancreas, neonate N16.CNhs11136.787-43B613.91
pancreas, neonate N25.CNhs11094.1555-45E236.90
pancreas, neonate N30.CNhs11182.1548-44H551.57
pituitary gland, adult.CNhs10493.21-1G80.68
pituitary gland, embryo E12.CNhs11018.346-16E60.36
pituitary gland, embryo E13.CNhs11009.370-44C70.52
pituitary gland, embryo E14.CNhs11037.398-44A50.00
pituitary gland, embryo E15.CNhs10592.427-16B90.35
pituitary gland, embryo E16.CNhs11036.449-43F60.18
pituitary gland, embryo E17.CNhs11039.1265-44F50.16
pituitary gland, neonate N00.CNhs11190.1308-22E90.00
placenta, adult pregnant day10.CNhs10472.539-13I70.70
placenta, adult pregnant day17.CNhs10464.577-18G30.64
prostate, adult.CNhs10470.859-1F86.17
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.00
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.16
small intestine, neonate N16.CNhs11114.790-21I1117.18
spinal cord, adult.CNhs10505.24-13C90.19
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.83
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H647.73
stomach, embryo E12.CNhs10588.356-43E30.00
stomach, embryo E15.CNhs10603.1252-16G86.10
stomach, embryo E16.CNhs11022.459-17D411.23
stomach, embryo E17.CNhs11006.1035-18D55.23
stomach, embryo E18.CNhs10999.1286-20C612.01
stomach, neonate N03.CNhs11193.1340-24B87.96
stomach, neonate N07.CNhs11210.718-18A910.58
stomach, neonate N25.CNhs11104.1355-25E424.08
stomach, neonate N30.CNhs11134.1386-42I166.49
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.00
testis, embryo E17.CNhs11029.486-18I50.00
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.00
testis, neonate N07.CNhs11222.726-26I40.65
testis, neonate N10.CNhs11204.763-44D90.00
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.00
thymus, embryo E15.CNhs11005.430-45I20.00
thymus, embryo E16.CNhs11002.456-26C50.26
thymus, embryo E17.CNhs10581.478-18C10.54
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.72
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.50
thymus, neonate N07.CNhs11211.713-19D30.30
thymus, neonate N10.CNhs11194.748-24E40.20
thymus, neonate N20.CNhs11186.820-7A20.39
thymus, neonate N25.CNhs11125.1362-25G70.19
thymus, neonate N30.CNhs11132.1393-42G20.23
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E41.93
uterus, adult pregnant day19.CNhs10497.590-15F57.13
uterus, adult.CNhs10509.92-27E52.75
vagina, adult.CNhs10502.89-27D52.36
vesicular gland, adult.CNhs10491.51-27F82.01
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A10.00
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.46
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.00
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.00
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A40.00
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.68
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.00
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.45
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A90.52
whole body, embryo E11.CNhs11014.324-5I80.21
whole body, embryo E12.CNhs10587.857-27C90.40
whole body, embryo E13.CNhs10512.372-23H20.51
whole body, embryo E14.5.CNhs10578.420-27D23.65
whole body, embryo E14.CNhs10519.395-14B11.47
whole body, embryo E16.CNhs10514.453-14F24.78
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G510.22
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G58.86
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G511.55
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G57.08
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G59.38
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G56.41
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G58.80
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G58.07
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G58.96
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G58.10
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G55.21
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G58.30
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G57.01
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G59.72
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G58.91
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G56.39
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G56.91
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G58.87
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G58.00
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G57.70
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G56.95
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G56.05
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G59.51
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G57.86
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G57.36
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G57.19
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G55.73
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G56.97
whole body, embryo E17.5.CNhs10513.490-9F97.91
whole body, embryo E17.CNhs10517.475-3I50.00
whole body, embryo E18.CNhs10516.493-3B310.76
whole body, neonate N00.CNhs10525.657-19C26.23
whole body, neonate N01.CNhs10576.659-23C60.19
whole body, neonate N06.CNhs10515.692-21D10.22
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
intestinal epithelial cell4.58e-079
epithelial cell of alimentary canal4.58e-079

Uber anatomy
Ontology termp-valuen
intestine2.71e-2231
gastrointestinal system1.32e-1947
digestive system2.10e-13116
digestive tract2.10e-13116
primitive gut2.10e-13116
endoderm-derived structure8.91e-13118
endoderm8.91e-13118
presumptive endoderm8.91e-13118
subdivision of digestive tract3.50e-12114
digestive tract diverticulum4.93e-1223
sac4.93e-1223
mucosa6.12e-1215
liver2.73e-1122
epithelial sac2.73e-1122
digestive gland2.73e-1122
epithelium of foregut-midgut junction2.73e-1122
anatomical boundary2.73e-1122
hepatobiliary system2.73e-1122
foregut-midgut junction2.73e-1122
hepatic diverticulum2.73e-1122
liver primordium2.73e-1122
septum transversum2.73e-1122
liver bud2.73e-1122
intestinal mucosa3.26e-1013
wall of intestine3.26e-1013
gastrointestinal system mucosa3.26e-1013
exocrine gland5.38e-0925
exocrine system5.38e-0925
trunk region element6.91e-0979
abdomen element1.12e-0849
abdominal segment element1.12e-0849
abdominal segment of trunk1.12e-0849
abdomen1.12e-0849
pancreas1.20e-0712
epithelium of mucosa4.58e-079
gastrointestinal system epithelium4.58e-079
intestinal epithelium4.58e-079
trunk7.62e-0790
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr18:56559971..56560016,%2B&oldid=4302313"