FFCP PHASE1:Hg19::chr13:31038652..31038662,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3146 | |EntrezGene=3146 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4983 | |HGNC=4983 | ||
|TSSclassifier=strong | |||
|UniProt=P09429,Q5T7C6 | |UniProt=P09429,Q5T7C6 | ||
|association_with_transcript=-205bp_to_ENST00000339872,ENST00000426225_5end | |association_with_transcript=-205bp_to_ENST00000339872,ENST00000426225_5end | ||
|cluster_id=chr13:31038652..31038662,- | |||
|description=CAGE_peak_29_at_HMGB1_5end | |description=CAGE_peak_29_at_HMGB1_5end | ||
|id=chr13:31038652..31038662,- | |id=chr13:31038652..31038662,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002567;1.41e-09;3!CL:1000306;1.69e-07;4!CL:0002547;1.69e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.54e-09,3;CL:1000306,2.04e-07,4;CL:0002547,2.04e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;1.07e-13;2!DOID:4556;1.41e-09;3 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,9.40e-14,2;DOID:4556,1.67e-09,3 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001000;5.92e-26;1!UBERON:0005352;5.92e-26;1!UBERON:0006947;1.41e-09;3!UBERON:0004054;1.41e-09;3!UBERON:0005904;1.69e-07;4!UBERON:0004797;1.69e-07;4!UBERON:0000415;1.69e-07;4!UBERON:0007240;1.69e-07;4!UBERON:0005742;1.69e-07;4!UBERON:0005734;1.69e-07;4!UBERON:0004664;1.69e-07;4!UBERON:0004663;1.69e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001000,5.93e-26,1;UBERON:0005352,5.93e-26,1;UBERON:0006947,1.41e-09,3;UBERON:0004054,1.41e-09,3;UBERON:0005904,1.69e-07,4;UBERON:0000415,2.04e-07,4;UBERON:0007240,2.04e-07,4;UBERON:0005742,2.04e-07,4;UBERON:0005734,2.04e-07,4;UBERON:0004664,2.04e-07,4;UBERON:0004663,2.04e-07,4 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0.30120591877825,0,0.232401601740905,0,0.293600439334847,0,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0.365328307529268,0,0,0,0.426730222566507,0,0,0.661044872784862,0,0,0,0,0,1.68152568894461,0,0.196709770113833,0,0.205601498999509,0.167186495390678,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0.506039384039006,0,0,0,0.301150238155546,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0.0945348171640679,0.443458794925128,0.175669571386252,0.327447688744282,0,0,0,0,0,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,1.05927344650575,0.286836620748814,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0.61246251376468,0.122834317311768,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0,0,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0.337552664482532,0,0.252433774244115,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0.8231480226628,0,0,0,0,0.441463099414651,0,0.343135620597051,0.219500570817251,0,0.201057944823262,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.626909658919938,0,0.383382679165211,0.492663237895943,0.176096868026452,0,0.288239906833923,0.25248486685276,0,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,0.387815147273333,0,0,0,0,0.257207374262142,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0.112085143993527,0,0.431255149719035,0,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0,0.415941723061614,0.178428988797162,0.315404830067869,0.117141414992713,0,0,0,0,0,0.347534457872331,0,0.343143423810856,0.206768026122887,0,0.320182673410333,0,0,0,0.248107807818777,0.306923946576125,0.280660094433074,0,0.511707249066704,0.160853921143607,0,0,0.532685175939381,0,0,0,0,0.200506470303285,0.184161977871793,0.114814448164607,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0.574265537996172,0,0,0.290012154876366,0.308097234229289,0,0.137836572484531,0,0,0.170453254832202,0,0.330569830721956,0.384380134730212,0.638063562472921,0.10115778085555,0,0.31481234683064,0,0.308033580176089,0,0,0,0.429374660225974,0.744316738719335,0,0,0,0,0,0,0,0.274537029736055,0,0.404364963146632,0,0,0,0,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0,0,0,0.443430153536676,0,0,0,0,0,0.411362273086194,0,0,0,0.213648142254946,0,0.245040215981032,0.185803175125719,0.144269212976445,0.213425530045242,0,0.199579371432817,0.383010740264733,0,0,0.842391534340376,0.456469358066384,0,0,0,0,0,0.425846237690326,0.343505344755765,0.614481528616916,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0.222617410045812,0,0.844501632511974,0,0,0.503865495708552,0,0.246169610922139,0,0.0898683511473268,0.179021174675609,0.511572370226872,0,0,0,0.969332746095218,0.185536196323703,0,0,0.437299999980979,0,0.568967241427498,0,0.236387681767936,0.344743373241465,0.583209226766509,0.173624994933292,0,0,0,0.110579259931225,0.591095237907095,0,0.10893846351899,0,0.230850775511391,0.113942055847001,0,0,0,0,0,0,0,0,0.498635045700469,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0.123563938946503,0,0.404406797884062,0,0,0.182454789215666,0,0,1.18375320854817,0,0,0.189559738885464,0.60129367765797,0,0,0,0.941798755221676,0,0,0.138674673013139,0,0.391969589657511,0,0.17472666824203,0,0.0967563312890851,0.219267951258557,0.164230914106418,0.0969890164884194,0.176512253383001,0,0.685209623233754,0.397429223405979,0.126621591911757,0.195551382734803,0,0.213452994739353,0.799238438328521,0,0.114536596165916,0.343189995723929,0.14405479798815,0,0.235694034616795,0.271808412147228,0.418411385249333,0.101998217636322,0.288950589901519,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0.0824158583811665,0.13480708770837,0.295282444544246,0.846733320657845,0.795229689809303,0,0.321506296930038,0,0.415440338029185,0,0,0.242998226632099,0.335434687599266,0.157611414598396,0.104909176269996,0.422401346077626,1.07572403599707,0,0,0,0.5085370753095,0,0,0,0,0.164185041498678,0.511164065356265,0.113312091520126,0,0,0.258565912723101,0.13223260174269,0.342173675768659,0.704815022316672,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0.2506898940227,0.306345576763462,0.327872630709804,0.628216385000937,0,0.366078794705889,0.3755727921195,0,0.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| ||
|short_description=p29@HMGB1 | |short_description=p29@HMGB1 | ||
}} | }} |
Latest revision as of 02:07, 17 September 2015
Short description: | p29@HMGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_HMGB1_5end |
Coexpression cluster: | NA |
Association with transcript: | -205bp_to_ENST00000339872, ENST00000426225_5end |
EntrezGene: | HMGB1 |
HGNC: | 4983 |
UniProt: | P09429Q5T7C6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.54e-09 | 3 |
fibroblast of tunica adventitia of artery | 2.04e-07 | 4 |
fibroblast of the aortic adventitia | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
vas deferens | 5.93e-26 | 1 |
spermatic cord | 5.93e-26 | 1 |
male genital duct | 1.41e-09 | 3 |
internal male genitalia | 1.41e-09 | 3 |
duct of male reproductive system | 1.69e-07 | 4 |
artery wall | 2.04e-07 | 4 |
tunica adventitia of artery | 2.04e-07 | 4 |
adventitia | 2.04e-07 | 4 |
tunica adventitia of blood vessel | 2.04e-07 | 4 |
aorta tunica adventitia | 2.04e-07 | 4 |
aorta wall | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
melanoma | 9.40e-14 | 2 |
lung large cell carcinoma | 1.67e-09 | 3 |