FFCP PHASE1:Hg19::chr1:17516275..17516284,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000412427,ENST00000539219_5end | |association_with_transcript=0bp_to_ENST00000412427,ENST00000539219_5end | ||
|cluster_id=chr1:17516275..17516284,+ | |||
|description=CAGE_peak_1_at_ENST00000412427_5end,CAGE_peak_1_at_ENST00000539219_5end | |description=CAGE_peak_1_at_ENST00000412427_5end,CAGE_peak_1_at_ENST00000539219_5end | ||
|id=chr1:17516275..17516284,+ | |id=chr1:17516275..17516284,+ | ||
|ontology_enrichment_celltype=CL:0000548!2.15e-16!679;CL:0000004!2.15e-16!679;CL:0000255!2.15e-16!679;CL:0000012!4.81e-16!682;CL:0000144!7.78e-13!625;CL:0000003!1.16e-11!722;CL:0000077!1.75e-11!19;CL:0000055!2.03e-11!180;CL:0000220!7.45e-10!246;CL:0002321!1.40e-09!248;CL:0000057!1.43e-09!75;CL:0002371!1.31e-08!591;CL:0000222!2.37e-08!119;CL:0000359!3.35e-08!32;CL:0000066!5.05e-08!254;CL:0000063!6.19e-08!578 | |ontology_enrichment_celltype=CL:0000548!2.15e-16!679;CL:0000004!2.15e-16!679;CL:0000255!2.15e-16!679;CL:0000012!4.81e-16!682;CL:0000144!7.78e-13!625;CL:0000003!1.16e-11!722;CL:0000077!1.75e-11!19;CL:0000055!2.03e-11!180;CL:0000220!7.45e-10!246;CL:0002321!1.40e-09!248;CL:0000057!1.43e-09!75;CL:0002371!1.31e-08!591;CL:0000222!2.37e-08!119;CL:0000359!3.35e-08!32;CL:0000066!5.05e-08!254;CL:0000063!6.19e-08!578 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.10e-13;10!CL:1000494;1.10e-13;10!CL:1000497;1.60e-13;17!CL:0002518;1.60e-13;17!CL:0000077;1.46e-11;19!CL:1000449;1.63e-10;15!CL:0002681;1.51e-08;12!CL:0002584;1.51e-08;12!CL:0002541;1.65e-07;3!CL:0000349;2.72e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,4.94e-14,10;CL:1000494,4.94e-14,10;CL:1000497,9.47e-14,17;CL:0002518,9.47e-14,17;CL:0000077,1.35e-11,19;CL:1000449,1.09e-10,15;CL:0002681,8.43e-09,12;CL:0002584,8.43e-09,12;CL:0002541,1.87e-07,3;CL:0000349,2.35e-07,19;CL:0000066,8.92e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!7.29e-12!29;DOID:120!7.55e-12!27;DOID:2394!2.44e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:193;2.51e-10;29!DOID:120;9.10e-10;27 | |||
|ontology_enrichment_disease_v019_2=DOID:193,2.31e-10,29;DOID:120,8.18e-10,27 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.65e-08!14;UBERON:0000158!1.65e-08!14;UBERON:0005256!1.48e-07!143;UBERON:0000992!7.25e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.10e-13;10!UBERON:0009773;1.10e-13;10!UBERON:0001231;1.10e-13;10!UBERON:0004810;1.10e-13;10!UBERON:0000353;1.40e-10;15!UBERON:0001851;1.49e-10;15!UBERON:0006555;1.63e-10;15!UBERON:0004819;1.63e-10;15!UBERON:0001285;1.63e-10;15!UBERON:0007684;1.63e-10;15!UBERON:0005631;1.05e-09;10!UBERON:0000158;1.05e-09;10!UBERON:0002113;9.10e-09;24!UBERON:0011143;9.10e-09;24!UBERON:0001225;1.51e-08;12!UBERON:0008987;1.51e-08;12!UBERON:0003124;1.65e-07;3!UBERON:0000920;1.65e-07;3!UBERON:0000489;8.32e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,4.94e-14,10;UBERON:0001851,7.24e-11,15;UBERON:0000353,7.50e-11,15;UBERON:0004211,1.09e-10,15;UBERON:0009773,1.09e-10,15;UBERON:0001231,1.09e-10,15;UBERON:0001285,1.09e-10,15;UBERON:0007684,1.09e-10,15;UBERON:0004208,1.09e-10,15;UBERON:0002417,5.28e-10,60;UBERON:0000916,5.28e-10,60;UBERON:0006555,6.92e-10,16;UBERON:0004819,6.92e-10,16;UBERON:0001225,8.43e-09,12;UBERON:0008987,8.43e-09,12;UBERON:0005631,1.65e-08,14;UBERON:0000158,1.65e-08,14;UBERON:0005172,2.69e-08,54;UBERON:0005173,2.69e-08,54;UBERON:0002113,5.03e-08,26;UBERON:0003918,5.03e-08,26;UBERON:0011143,5.03e-08,26;UBERON:0005095,5.03e-08,26;UBERON:0007687,5.03e-08,26;UBERON:0000920,1.87e-07,3 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.845726424575827,2.00146596706261,0.446961094427288,3.48935409640147,0,0,0,0,0,0.218441372130172,1.84636884759917,0,0,0,1.20538905604795,0.730310090387373,1.46379839637152,0.246242116153576,0.816002764977012,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.472674085820339,1.33037638477538,0.351339142772504,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.886413581652058,5.69359477496841,0.860509862246441,0,1.12135520028461,1.06748995729705,0.24666754841716,0,0,0,0.302714855289863,0,0,0,0,0,0,0.323745888736263,0,0,0.368502951935304,0,0,0.247266929278557,0,2.87447256726495,0,0,0.277064115484183,0.877955241761676,2.45190236639216,0,0.113432183160021,6.81680615617675,1.06778694409284,0.635795703478686,1.50045548042201,0.103052529238439,1.03056216018252,0.18611685633159,2.19409231913646,1.07180705677318,2.01947019395292,0.552299391853796,0.161646056818812,1.06502877754984,0.705264687593482,0.339121184620975,0.57978255948989,0.545492241181669,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.686271241194102,0.329250856225877,0,0.201057944823262,0,0,0,2.88662684050547,0,0.117408694235822,0,0,0,0,0,0,0,0,0,1.51183915378974,0.425325291727159,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,1.68053230485111,0,0,0.26593811658487,1.04007436911366,0,0,0,0.714889968290738,0,0,0,0.710783897485092,0,2.71295439353627,6.10073421020206,3.19913571782583,0,0,0,0.239624855491583,0,0,0.723906533337896,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9115920614313,5.53129865271201,6.46579901639132,5.62278791965023,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,0,0,2.41912234663744,0.744323423456331,3.06923946576125,0.280660094433074,1.53766979106841,0,1.60853921143608,0,0,0.177561725313127,0,0,0,0,0.802025881213139,0.0920809889358963,0,0,0,1.80479845162965,1.30926073077505,3.13739907670742,0,1.16106791782163,0,0,1.0795795805107,0,1.35473218771926,1.50506932156456,2.29388645740534,1.66215201785745,1.56712328305525,0,0,0,0.328014645699706,0,0,0,0.082509499920588,0,0.650060246036521,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.534192213880424,0.330569830721956,0.384380134730212,0.638063562472921,0.10115778085555,0.929691098594572,2.83331112147576,0,0,0,0,0,0.143124886741991,0,0.632758849437452,2.09693213316207,0.511795582622668,0,0,1.56989728039846,0,0.274537029736055,0.117812402345686,0,1.58510321173008,0,0,0.974853958525138,1.05650146756755,0,0,0,0.551365343546124,1.32687795048244,0.438450885253763,0,0,1.42037263873893,0.92947049429925,1.40847801266121,0.286822704408103,0.687743287091848,3.21003946333125,0,0,0,0,0,0.0962221127255121,1.34060455107157,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740072527842,0.593929361665277,8.90766036087773,0,0,6.01067007123692,0,0,0,0,0,0.20453736500431,0,5.59871257791253,1.3480252672099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.35527662480906,0,0.0897576444097721,0,5.10401855571071,2.1983422416447,6.39641731222362,0,0,0,0,0,0,0,0,1.89898258075224,1.95879369790977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,2.08942095792966,0,2.92376255201748,0,0,0,0,0,0,0,0.19871461170299,0,0,2.32460578729448,0,0.19980960958213,0,0,0,0,0,0.235694034616795,0.271808412147228,0.104602846312333,0,0,0,0,0,1.28929632425987,0,0,0,0,0,0,0,0,3.96329871896644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0.681552087141687,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,0,0.378806010550178,0,0,0.228840068396924,0.151230923763239,0,0.295710299979268,0.63718706865481,0.449803112163605,0.310525913752519,0.414706207840855,3.98762571836992,2.08698024724694,0.601030435988874,4.18885733385675,2.03435366602331,0.545545977607678,1.18151612746737,2.32016879939247,1.19428766609585,2.00013882331577,0.343395705182793,1.01024846629776,1.26184898228651,1.54095864325843,4.07439023612359,0,3.40058888268409,3.47283711485751,0.244736704506468,1.25362188757041,0.926404341482917,7.45565768567604,3.7104720648635,6.36616326294019,0.506827321959218,0.256241518587947,0,0.607719912354764,0,0,0,0,0,0.491545817507439,1.26787274015176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,2.40083213212386,0,0,0,0,0,0,0,0,12.52380029068,1.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| |phase1_expression=0.54503513781167,0.642301571672949,0.845726424575827,2.00146596706261,0.446961094427288,3.48935409640147,0,0,0,0,0,0.218441372130172,1.84636884759917,0,0,0,1.20538905604795,0.730310090387373,1.46379839637152,0.246242116153576,0.816002764977012,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.472674085820339,1.33037638477538,0.351339142772504,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.886413581652058,5.69359477496841,0.860509862246441,0,1.12135520028461,1.06748995729705,0.24666754841716,0,0,0,0.302714855289863,0,0,0,0,0,0,0.323745888736263,0,0,0.368502951935304,0,0,0.247266929278557,0,2.87447256726495,0,0,0.277064115484183,0.877955241761676,2.45190236639216,0,0.113432183160021,6.81680615617675,1.06778694409284,0.635795703478686,1.50045548042201,0.103052529238439,1.03056216018252,0.18611685633159,2.19409231913646,1.07180705677318,2.01947019395292,0.552299391853796,0.161646056818812,1.06502877754984,0.705264687593482,0.339121184620975,0.57978255948989,0.545492241181669,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.686271241194102,0.329250856225877,0,0.201057944823262,0,0,0,2.88662684050547,0,0.117408694235822,0,0,0,0,0,0,0,0,0,1.51183915378974,0.425325291727159,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,1.68053230485111,0,0,0.26593811658487,1.04007436911366,0,0,0,0.714889968290738,0,0,0,0.710783897485092,0,2.71295439353627,6.10073421020206,3.19913571782583,0,0,0,0.239624855491583,0,0,0.723906533337896,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9115920614313,5.53129865271201,6.46579901639132,5.62278791965023,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,0,0,2.41912234663744,0.744323423456331,3.06923946576125,0.280660094433074,1.53766979106841,0,1.60853921143608,0,0,0.177561725313127,0,0,0,0,0.802025881213139,0.0920809889358963,0,0,0,1.80479845162965,1.30926073077505,3.13739907670742,0,1.16106791782163,0,0,1.0795795805107,0,1.35473218771926,1.50506932156456,2.29388645740534,1.66215201785745,1.56712328305525,0,0,0,0.328014645699706,0,0,0,0.082509499920588,0,0.650060246036521,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.534192213880424,0.330569830721956,0.384380134730212,0.638063562472921,0.10115778085555,0.929691098594572,2.83331112147576,0,0,0,0,0,0.143124886741991,0,0.632758849437452,2.09693213316207,0.511795582622668,0,0,1.56989728039846,0,0.274537029736055,0.117812402345686,0,1.58510321173008,0,0,0.974853958525138,1.05650146756755,0,0,0,0.551365343546124,1.32687795048244,0.438450885253763,0,0,1.42037263873893,0.92947049429925,1.40847801266121,0.286822704408103,0.687743287091848,3.21003946333125,0,0,0,0,0,0.0962221127255121,1.34060455107157,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740072527842,0.593929361665277,8.90766036087773,0,0,6.01067007123692,0,0,0,0,0,0.20453736500431,0,5.59871257791253,1.3480252672099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.35527662480906,0,0.0897576444097721,0,5.10401855571071,2.1983422416447,6.39641731222362,0,0,0,0,0,0,0,0,1.89898258075224,1.95879369790977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,2.08942095792966,0,2.92376255201748,0,0,0,0,0,0,0,0.19871461170299,0,0,2.32460578729448,0,0.19980960958213,0,0,0,0,0,0.235694034616795,0.271808412147228,0.104602846312333,0,0,0,0,0,1.28929632425987,0,0,0,0,0,0,0,0,3.96329871896644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0.681552087141687,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,0,0.378806010550178,0,0,0.228840068396924,0.151230923763239,0,0.295710299979268,0.63718706865481,0.449803112163605,0.310525913752519,0.414706207840855,3.98762571836992,2.08698024724694,0.601030435988874,4.18885733385675,2.03435366602331,0.545545977607678,1.18151612746737,2.32016879939247,1.19428766609585,2.00013882331577,0.343395705182793,1.01024846629776,1.26184898228651,1.54095864325843,4.07439023612359,0,3.40058888268409,3.47283711485751,0.244736704506468,1.25362188757041,0.926404341482917,7.45565768567604,3.7104720648635,6.36616326294019,0.506827321959218,0.256241518587947,0,0.607719912354764,0,0,0,0,0,0.491545817507439,1.26787274015176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,2.40083213212386,0,0,0,0,0,0,0,0,12.52380029068,1.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| ||
|short_description=p1@ENST00000412427,p1@ENST00000539219 | |short_description=p1@ENST00000412427,p1@ENST00000539219 | ||
}} | }} |
Latest revision as of 00:40, 28 July 2015
Short description: | p1@ENST00000412427, p1@ENST00000539219 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000412427_5end, CAGE_peak_1_at_ENST00000539219_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000412427, ENST00000539219_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 4.94e-14 | 10 |
nephron tubule epithelial cell | 4.94e-14 | 10 |
kidney cell | 9.47e-14 | 17 |
kidney epithelial cell | 9.47e-14 | 17 |
mesothelial cell | 1.35e-11 | 19 |
epithelial cell of nephron | 1.09e-10 | 15 |
kidney cortical cell | 8.43e-09 | 12 |
renal cortical epithelial cell | 8.43e-09 | 12 |
chorionic membrane mesenchymal stem cell | 1.87e-07 | 3 |
extraembryonic cell | 2.35e-07 | 19 |
epithelial cell | 8.92e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 4.94e-14 | 10 |
cortex | 7.24e-11 | 15 |
parenchyma | 7.50e-11 | 15 |
nephron epithelium | 1.09e-10 | 15 |
renal tubule | 1.09e-10 | 15 |
nephron tubule | 1.09e-10 | 15 |
nephron | 1.09e-10 | 15 |
uriniferous tubule | 1.09e-10 | 15 |
nephrogenic mesenchyme | 1.09e-10 | 15 |
abdominal segment of trunk | 5.28e-10 | 60 |
abdomen | 5.28e-10 | 60 |
excretory tube | 6.92e-10 | 16 |
kidney epithelium | 6.92e-10 | 16 |
cortex of kidney | 8.43e-09 | 12 |
renal parenchyma | 8.43e-09 | 12 |
extraembryonic membrane | 1.65e-08 | 14 |
membranous layer | 1.65e-08 | 14 |
abdomen element | 2.69e-08 | 54 |
abdominal segment element | 2.69e-08 | 54 |
kidney | 5.03e-08 | 26 |
kidney mesenchyme | 5.03e-08 | 26 |
upper urinary tract | 5.03e-08 | 26 |
kidney rudiment | 5.03e-08 | 26 |
kidney field | 5.03e-08 | 26 |
egg chorion | 1.87e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 2.31e-10 | 29 |
female reproductive organ cancer | 8.18e-10 | 27 |