FFCP PHASE1:Hg19::chr16:552766..552780,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9727 | |EntrezGene=9727 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17224 | |HGNC=17224 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000487899_5end | |association_with_transcript=16bp_to_ENST00000487899_5end | ||
|cluster_id=chr16:552766..552780,+ | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_10_at_RAB11FIP3_5end | |description=CAGE_peak_10_at_RAB11FIP3_5end | ||
|id=chr16:552766..552780,+ | |id=chr16:552766..552780,+ | ||
|ontology_enrichment_celltype=CL:0000181!1.70e-17!12;CL:0000417!1.70e-17!12;CL:0000668!1.70e-17!12;CL:0000414!1.70e-17!12;CL:0000412!1.70e-17!12;CL:0000182!1.70e-17!12 | |ontology_enrichment_celltype=CL:0000181!1.70e-17!12;CL:0000417!1.70e-17!12;CL:0000668!1.70e-17!12;CL:0000414!1.70e-17!12;CL:0000412!1.70e-17!12;CL:0000182!1.70e-17!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.24e-10;12!CL:0002563;2.52e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.13e-10,12;CL:0002563,2.61e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.44e-15!19;UBERON:0006925!1.44e-15!19;UBERON:0008836!1.44e-15!19;UBERON:0008835!2.20e-13!22;UBERON:0003894!2.20e-13!22;UBERON:0009854!8.80e-13!23;UBERON:0007499!1.01e-11!25;UBERON:0009497!1.01e-11!25;UBERON:0000015!1.01e-11!25;UBERON:0002423!1.01e-11!25;UBERON:0006235!1.01e-11!25;UBERON:0004161!1.01e-11!25;UBERON:0005057!2.97e-11!26;UBERON:0009856!2.97e-11!26;UBERON:0005409!6.88e-11!35;UBERON:0000160!1.43e-10!27;UBERON:0004921!2.67e-10!129;UBERON:0004185!2.67e-10!129;UBERON:0002365!2.32e-09!31;UBERON:0002330!2.32e-09!31;UBERON:0002902!2.46e-09!1;UBERON:0009899!2.46e-09!1;UBERON:0003929!6.06e-09!54;UBERON:0002368!3.11e-08!35;UBERON:0001007!3.61e-08!155;UBERON:0001555!3.61e-08!155;UBERON:0007026!3.61e-08!155;UBERON:0004119!2.71e-07!169;UBERON:0000925!2.71e-07!169;UBERON:0006595!2.71e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;1.78e-51;4!UBERON:0000160;1.35e-25;17!UBERON:0005409;3.57e-20;22!UBERON:0004921;5.80e-12;33!UBERON:0002114;9.43e-11;2!UBERON:0001242;2.52e-08;4!UBERON:0001262;2.52e-08;4!UBERON:0004786;2.52e-08;4!UBERON:0004808;2.52e-08;4!UBERON:0001277;2.52e-08;4!UBERON:0001007;4.80e-08;81!UBERON:0002107;6.77e-07;19!UBERON:0006925;6.77e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.94e-51,4;UBERON:0000160,1.44e-25,17;UBERON:0005409,6.73e-18,25;UBERON:0002114,9.90e-11,2;UBERON:0004921,8.86e-09,118;UBERON:0001242,2.61e-08,4;UBERON:0001262,2.61e-08,4;UBERON:0004786,2.61e-08,4;UBERON:0004808,2.61e-08,4;UBERON:0001277,2.61e-08,4;UBERON:0001007,3.54e-07,145;UBERON:0001555,3.54e-07,145;UBERON:0007026,3.54e-07,145;UBERON:0002107,6.57e-07,19;UBERON:0006925,6.57e-07,19;UBERON:0008836,6.57e-07,19 | |||
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|short_description=p10@RAB11FIP3 | |short_description=p10@RAB11FIP3 | ||
}} | }} |
Latest revision as of 23:39, 16 September 2015
Short description: | p10@RAB11FIP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_RAB11FIP3_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 16bp_to_ENST00000487899_5end |
EntrezGene: | RAB11FIP3 |
HGNC: | 17224 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.13e-10 | 12 |
intestinal epithelial cell | 2.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
small intestine | 1.94e-51 | 4 |
intestine | 1.44e-25 | 17 |
gastrointestinal system | 6.73e-18 | 25 |
duodenum | 9.90e-11 | 2 |
subdivision of digestive tract | 8.86e-09 | 118 |
intestinal mucosa | 2.61e-08 | 4 |
wall of intestine | 2.61e-08 | 4 |
gastrointestinal system mucosa | 2.61e-08 | 4 |
gastrointestinal system epithelium | 2.61e-08 | 4 |
intestinal epithelium | 2.61e-08 | 4 |
digestive system | 3.54e-07 | 145 |
digestive tract | 3.54e-07 | 145 |
primitive gut | 3.54e-07 | 145 |
liver | 6.57e-07 | 19 |
digestive gland | 6.57e-07 | 19 |
liver bud | 6.57e-07 | 19 |