FFCP PHASE1:Hg19::chr20:15967566..15967580,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:15967566..15967580,+ | |||
|coexpression_cluster_id=C1862 | |||
|description=CAGE_peak_at_chr20:15967566..15967580,+ | |description=CAGE_peak_at_chr20:15967566..15967580,+ | ||
|id=chr20:15967566..15967580,+ | |id=chr20:15967566..15967580,+ | ||
|ontology_enrichment_celltype=CL:0000945!6.49e-18!24;CL:0000826!6.49e-18!24;CL:0000236!9.24e-12!14;CL:0000838!1.22e-10!52;CL:0000542!2.17e-10!53;CL:0000051!2.17e-10!53;CL:0002149!9.43e-08!6;CL:0002255!9.43e-08!6 | |ontology_enrichment_celltype=CL:0000945!6.49e-18!24;CL:0000826!6.49e-18!24;CL:0000236!9.24e-12!14;CL:0000838!1.22e-10!52;CL:0000542!2.17e-10!53;CL:0000051!2.17e-10!53;CL:0002149!9.43e-08!6;CL:0002255!9.43e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000313;2.30e-21;1!CL:0000946;6.31e-21;1!CL:0000786;6.31e-21;1!CL:0000159;2.23e-11;2!CL:0000945;5.23e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.30e-21,1;CL:0000946,5.16e-21,1;CL:0000786,5.16e-21,1;CL:0000980,5.16e-21,1;CL:0000159,2.23e-11,2;CL:0000785,3.35e-11,2;CL:0000955,3.35e-11,2;CL:0000818,3.35e-11,2;CL:0000954,3.35e-11,2;CL:0000816,3.35e-11,2;CL:0000945,5.23e-08,24;CL:0000826,5.23e-08,24;CL:0000817,6.78e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000954;3.70e-11;2 | |||
|ontology_enrichment_disease=DOID:299!4.55e-14!25;DOID:4468!6.10e-11!2;DOID:3001!9.43e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:4468;1.64e-40;2!DOID:2152;2.30e-21;1!DOID:299;3.84e-13;25!DOID:3493;2.60e-11;2!DOID:0060058;6.93e-09;10!DOID:120;2.77e-07;27!DOID:193;8.09e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,2.46e-40,2;DOID:2152,2.30e-21,1;DOID:299,4.15e-13,25;DOID:3493,2.73e-11,2;DOID:0060058,6.28e-09,10;DOID:120,2.90e-07,27;DOID:193,8.42e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0001950!1.49e-15!20;UBERON:0002619!4.57e-14!22;UBERON:0001869!5.85e-14!32;UBERON:0001893!4.85e-13!34;UBERON:0000956!2.87e-12!25;UBERON:0000203!2.87e-12!25;UBERON:0002791!4.00e-11!33;UBERON:0002020!9.35e-11!34;UBERON:0003528!9.35e-11!34;UBERON:0002780!1.61e-10!41;UBERON:0001890!1.61e-10!41;UBERON:0006240!1.61e-10!41;UBERON:0004177!2.21e-10!7;UBERON:0003080!3.16e-10!42;UBERON:0002021!1.31e-08!5;UBERON:0002106!3.77e-07!3;UBERON:0004854!3.77e-07!3;UBERON:0009034!3.77e-07!3;UBERON:0002095!3.77e-07!3;UBERON:0004782!3.77e-07!3;UBERON:0003281!3.77e-07!3;UBERON:0009664!3.77e-07!3;UBERON:0002296!3.77e-07!3;UBERON:0005602!3.77e-07!3;UBERON:0001179!3.77e-07!3;UBERON:0006293!3.77e-07!3;UBERON:0000200!4.02e-07!6;UBERON:0001049!4.64e-07!57;UBERON:0005068!4.64e-07!57;UBERON:0006241!4.64e-07!57;UBERON:0007135!4.64e-07!57;UBERON:0002616!9.26e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;2.30e-21;1!UBERON:0004909;2.23e-11;2!UBERON:0002106;7.26e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.30e-21,1;UBERON:0004909,2.23e-11,2;UBERON:0002106,6.34e-08,3;UBERON:0004854,6.34e-08,3;UBERON:0009034,6.34e-08,3;UBERON:0002095,6.34e-08,3;UBERON:0004782,6.34e-08,3;UBERON:0003281,6.34e-08,3;UBERON:0009664,6.34e-08,3;UBERON:0002296,6.34e-08,3;UBERON:0005602,6.34e-08,3;UBERON:0001179,6.34e-08,3;UBERON:0006293,6.34e-08,3 | |||
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| ||
|short_description=p@chr20:15967566..15967580,+ | |short_description=p@chr20:15967566..15967580,+ | ||
}} | }} |
Latest revision as of 12:02, 28 July 2015
Short description: | p@chr20:15967566..15967580, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:15967566..15967580, + |
Coexpression cluster: | C1862_mesothelioma_serous_clear_kidney_heart_hepatoma_cervical |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.30e-21 | 1 |
antibody secreting cell | 5.16e-21 | 1 |
plasma cell | 5.16e-21 | 1 |
plasmablast | 5.16e-21 | 1 |
seromucus secreting cell | 2.23e-11 | 2 |
mature B cell | 3.35e-11 | 2 |
pre-B-II cell | 3.35e-11 | 2 |
transitional stage B cell | 3.35e-11 | 2 |
small pre-B-II cell | 3.35e-11 | 2 |
immature B cell | 3.35e-11 | 2 |
lymphocyte of B lineage | 5.23e-08 | 24 |
pro-B cell | 5.23e-08 | 24 |
precursor B cell | 6.78e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 2.30e-21 | 1 |
epithelium of gonad | 2.23e-11 | 2 |
spleen | 6.34e-08 | 3 |
gastrointestinal system mesentery | 6.34e-08 | 3 |
stomach region | 6.34e-08 | 3 |
mesentery | 6.34e-08 | 3 |
gastrointestinal system serosa | 6.34e-08 | 3 |
mesentery of stomach | 6.34e-08 | 3 |
gut mesentery | 6.34e-08 | 3 |
dorsal mesentery | 6.34e-08 | 3 |
dorsal mesogastrium | 6.34e-08 | 3 |
peritoneal cavity | 6.34e-08 | 3 |
spleen primordium | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 2.46e-40 | 2 |
ovary epithelial cancer | 2.30e-21 | 1 |
adenocarcinoma | 4.15e-13 | 25 |
signet ring cell adenocarcinoma | 2.73e-11 | 2 |
lymphoma | 6.28e-09 | 10 |
female reproductive organ cancer | 2.90e-07 | 27 |
reproductive organ cancer | 8.42e-07 | 29 |