FFCP PHASE1:Hg19::chr20:62669277..62669301,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=27655 | |HGNC=27655 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-183bp_to_ENST00000463337_5end | |association_with_transcript=-183bp_to_ENST00000463337_5end | ||
|cluster_id=chr20:62669277..62669301,+ | |||
|coexpression_cluster_id=C4064 | |||
|description=CAGE_peak_4_at_LINC00176_5end | |description=CAGE_peak_4_at_LINC00176_5end | ||
|id=chr20:62669277..62669301,+ | |id=chr20:62669277..62669301,+ | ||
|ontology_enrichment_celltype=CL:0002139!1.48e-19!24;CL:0000115!4.61e-18!35;CL:0000071!1.49e-14!18;CL:0002546!1.49e-14!18;CL:0002078!2.42e-13!44;CL:0002543!1.60e-10!6;CL:0000213!3.20e-09!57;CL:0000215!3.20e-09!57;CL:0000838!4.89e-08!52;CL:0000542!8.20e-08!53;CL:0000051!8.20e-08!53 | |ontology_enrichment_celltype=CL:0002139!1.48e-19!24;CL:0000115!4.61e-18!35;CL:0000071!1.49e-14!18;CL:0002546!1.49e-14!18;CL:0002078!2.42e-13!44;CL:0002543!1.60e-10!6;CL:0000213!3.20e-09!57;CL:0000215!3.20e-09!57;CL:0000838!4.89e-08!52;CL:0000542!8.20e-08!53;CL:0000051!8.20e-08!53 | ||
|ontology_enrichment_celltype_v019=CL:0002139;7.02e-17;24!CL:0002543;1.20e-13;6!CL:0002144;1.54e-12;3!CL:0000071;5.94e-12;18!CL:0000115;8.89e-12;36!CL:0002078;4.06e-09;45!CL:0000213;8.33e-07;58!CL:0000215;8.33e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,7.39e-17,24;CL:0000115,2.81e-14,36;CL:0002543,1.04e-13,6;CL:0002144,1.41e-12,3;CL:0000071,5.29e-12,18;CL:0002546,5.29e-12,18;CL:0002078,3.19e-11,45;CL:0000838,7.68e-10,52;CL:0000542,1.23e-09,53;CL:0000051,1.23e-09,53;CL:0000213,1.76e-08,58;CL:0000215,1.76e-08,58 | |||
|ontology_enrichment_development_v019=CL:0002546;5.94e-12;18!UBERON:0008425;3.39e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;2.37e-10;1!DOID:0060061;2.37e-10;1!DOID:8691;2.37e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.59e-10,1;DOID:0060061,2.59e-10,1;DOID:8691,2.59e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!1.49e-14!18;UBERON:0004638!1.49e-14!18;UBERON:0004852!1.49e-14!18;UBERON:0000487!2.05e-11!22;UBERON:0006914!9.93e-10!25;UBERON:0002465!4.55e-08!10;UBERON:0001638!7.66e-07!9;UBERON:0003920!7.66e-07!9;UBERON:0004582!7.66e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;1.54e-12;3!UBERON:0001915;1.54e-12;3!UBERON:0001982;1.54e-12;3!UBERON:0004638;5.94e-12;18!UBERON:0001986;5.94e-12;18!UBERON:0004852;5.94e-12;18!UBERON:0000487;9.40e-10;22!UBERON:0001638;2.83e-09;9!UBERON:0003920;2.83e-09;9!UBERON:0004582;2.83e-09;9!UBERON:0006914;1.46e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,1.41e-12,3;UBERON:0001915,1.41e-12,3;UBERON:0001982,1.41e-12,3;UBERON:0004638,5.29e-12,18;UBERON:0001986,5.29e-12,18;UBERON:0004852,5.29e-12,18;UBERON:0000487,8.56e-10,22;UBERON:0001638,2.56e-09,9;UBERON:0003920,2.56e-09,9;UBERON:0004582,2.56e-09,9;UBERON:0006914,1.34e-08,25 | |||
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| ||
|short_description=p4@LINC00176 | |short_description=p4@LINC00176 | ||
}} | }} |
Latest revision as of 15:08, 17 September 2015
Short description: | p4@LINC00176 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LINC00176_5end |
Coexpression cluster: | C4064_hairy_b_small_cord_breast_adult_mycosis |
Association with transcript: | -183bp_to_ENST00000463337_5end |
EntrezGene: | NA |
HGNC: | 27655 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 7.39e-17 | 24 |
endothelial cell | 2.81e-14 | 36 |
vein endothelial cell | 1.04e-13 | 6 |
capillary endothelial cell | 1.41e-12 | 3 |
blood vessel endothelial cell | 5.29e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.29e-12 | 18 |
meso-epithelial cell | 3.19e-11 | 45 |
lymphoid lineage restricted progenitor cell | 7.68e-10 | 52 |
lymphocyte | 1.23e-09 | 53 |
common lymphoid progenitor | 1.23e-09 | 53 |
lining cell | 1.76e-08 | 58 |
barrier cell | 1.76e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 1.41e-12 | 3 |
endothelium of capillary | 1.41e-12 | 3 |
capillary | 1.41e-12 | 3 |
blood vessel endothelium | 5.29e-12 | 18 |
endothelium | 5.29e-12 | 18 |
cardiovascular system endothelium | 5.29e-12 | 18 |
simple squamous epithelium | 8.56e-10 | 22 |
vein | 2.56e-09 | 9 |
venous blood vessel | 2.56e-09 | 9 |
venous system | 2.56e-09 | 9 |
squamous epithelium | 1.34e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.59e-10 | 1 |
cutaneous T cell lymphoma | 2.59e-10 | 1 |
mycosis fungoides | 2.59e-10 | 1 |