FFCP PHASE1:Hg19::chr18:28573877..28573881,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:28573877..28573881,- | |||
|description=CAGE_peak_at_chr18:28573877..28573881,- | |description=CAGE_peak_at_chr18:28573877..28573881,- | ||
|id=chr18:28573877..28573881,- | |id=chr18:28573877..28573881,- | ||
|ontology_enrichment_celltype=CL:0002076!5.98e-15!43;CL:0000223!6.29e-12!59;CL:0000066!1.10e-11!254;CL:0002251!1.48e-11!21;CL:0002623!6.42e-08!3;CL:0002159!6.92e-08!13;CL:0002541!9.52e-08!3;CL:0002621!9.97e-08!3;CL:0002166!3.76e-07!3 | |ontology_enrichment_celltype=CL:0002076!5.98e-15!43;CL:0000223!6.29e-12!59;CL:0000066!1.10e-11!254;CL:0002251!1.48e-11!21;CL:0002623!6.42e-08!3;CL:0002159!6.92e-08!13;CL:0002541!9.52e-08!3;CL:0002621!9.97e-08!3;CL:0002166!3.76e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002537;1.15e-19;5!CL:0000349;1.63e-19;19!CL:0000240;1.95e-16;6!CL:0000311;1.95e-16;6!CL:0000079;1.95e-16;6!CL:0000237;1.95e-16;6!CL:0002541;7.01e-15;3!CL:0002623;7.01e-15;3!CL:0002336;3.45e-12;1!CL:0002261;3.45e-12;1!CL:0002170;3.45e-12;1!CL:0000150;5.02e-11;9!CL:0000312;2.68e-09;5!CL:0000622;2.68e-09;5!CL:0002251;1.18e-08;20!CL:0000154;6.83e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,5.05e-20,5;CL:0000349,1.39e-19,19;CL:0000240,1.90e-16,6;CL:0000311,1.90e-16,6;CL:0000079,1.90e-16,6;CL:0000237,1.90e-16,6;CL:0000036,1.90e-16,6;CL:0000357,1.90e-16,6;CL:0000114,1.90e-16,6;CL:0002541,1.07e-14,3;CL:0002623,1.07e-14,3;CL:0002336,3.65e-12,1;CL:0002261,3.65e-12,1;CL:0002170,3.65e-12,1;CL:0000150,5.77e-11,9;CL:0000312,2.57e-09,5;CL:0000622,3.44e-09,5;CL:0002251,1.32e-08,20;CL:0000154,8.41e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000357;1.95e-16;6!CL:0000114;1.95e-16;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.10e-15!169;UBERON:0000925!4.10e-15!169;UBERON:0006595!4.10e-15!169;UBERON:0000166!1.01e-13!21;UBERON:0000161!3.08e-13!35;UBERON:0005631!1.77e-12!14;UBERON:0000158!1.77e-12!14;UBERON:0001004!3.36e-12!72;UBERON:0000165!1.70e-11!28;UBERON:0000930!1.70e-11!28;UBERON:0001444!7.64e-10!48;UBERON:0000478!1.94e-09!24;UBERON:0001007!4.40e-09!155;UBERON:0001555!4.40e-09!155;UBERON:0007026!4.40e-09!155;UBERON:0004923!9.36e-09!57;UBERON:0003729!1.62e-08!5;UBERON:0003124!3.22e-08!7;UBERON:0001723!5.08e-08!3;UBERON:0001033!5.08e-08!3;UBERON:0010056!5.08e-08!3;UBERON:0000064!5.91e-08!219;UBERON:0003102!5.93e-08!95;UBERON:0000476!9.52e-08!3;UBERON:0000920!9.52e-08!3;UBERON:0001949!9.97e-08!3;UBERON:0000065!3.41e-07!53;UBERON:0000078!4.42e-07!18 | |ontology_enrichment_uberon=UBERON:0004119!4.10e-15!169;UBERON:0000925!4.10e-15!169;UBERON:0006595!4.10e-15!169;UBERON:0000166!1.01e-13!21;UBERON:0000161!3.08e-13!35;UBERON:0005631!1.77e-12!14;UBERON:0000158!1.77e-12!14;UBERON:0001004!3.36e-12!72;UBERON:0000165!1.70e-11!28;UBERON:0000930!1.70e-11!28;UBERON:0001444!7.64e-10!48;UBERON:0000478!1.94e-09!24;UBERON:0001007!4.40e-09!155;UBERON:0001555!4.40e-09!155;UBERON:0007026!4.40e-09!155;UBERON:0004923!9.36e-09!57;UBERON:0003729!1.62e-08!5;UBERON:0003124!3.22e-08!7;UBERON:0001723!5.08e-08!3;UBERON:0001033!5.08e-08!3;UBERON:0010056!5.08e-08!3;UBERON:0000064!5.91e-08!219;UBERON:0003102!5.93e-08!95;UBERON:0000476!9.52e-08!3;UBERON:0000920!9.52e-08!3;UBERON:0001949!9.97e-08!3;UBERON:0000065!3.41e-07!53;UBERON:0000078!4.42e-07!18 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.45e-26;10!UBERON:0000158;3.45e-26;10!UBERON:0000478;2.22e-15;24!UBERON:0003124;7.01e-15;3!UBERON:0000920;7.01e-15;3!UBERON:0000305;3.17e-14;7!UBERON:0000165;2.69e-09;28!UBERON:0001044;6.83e-08;6!UBERON:0003293;6.83e-08;6!UBERON:0003294;6.83e-08;6!UBERON:0010047;6.83e-08;6!UBERON:0003408;6.83e-08;6!UBERON:0000167;6.83e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.12e-26,14;UBERON:0000158,1.12e-26,14;UBERON:0000478,1.96e-15,24;UBERON:0000920,1.07e-14,3;UBERON:0000305,1.76e-14,7;UBERON:0003124,7.42e-14,7;UBERON:0004871,9.64e-13,8;UBERON:0004923,9.85e-12,66;UBERON:0000165,5.94e-09,29;UBERON:0000930,5.94e-09,29;UBERON:0001044,8.41e-08,6;UBERON:0003293,8.41e-08,6;UBERON:0003294,8.41e-08,6;UBERON:0010047,8.41e-08,6;UBERON:0000167,8.41e-08,6;UBERON:0000166,8.45e-08,22 | |||
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| ||
|short_description=p@chr18:28573877..28573881,- | |short_description=p@chr18:28573877..28573881,- | ||
}} | }} |
Latest revision as of 00:17, 26 July 2015
Short description: | p@chr18:28573877..28573881, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:28573877..28573881, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 5.05e-20 | 5 |
extraembryonic cell | 1.39e-19 | 19 |
stratified squamous epithelial cell | 1.90e-16 | 6 |
keratin accumulating cell | 1.90e-16 | 6 |
stratified epithelial cell | 1.90e-16 | 6 |
keratinizing barrier epithelial cell | 1.90e-16 | 6 |
epithelial fate stem cell | 1.90e-16 | 6 |
stratified epithelial stem cell | 1.90e-16 | 6 |
surface ectodermal cell | 1.90e-16 | 6 |
chorionic membrane mesenchymal stem cell | 1.07e-14 | 3 |
acinar cell of salivary gland | 1.07e-14 | 3 |
buccal mucosa cell | 3.65e-12 | 1 |
endothelial cell of viscerocranial mucosa | 3.65e-12 | 1 |
keratinized cell of the oral mucosa | 3.65e-12 | 1 |
glandular epithelial cell | 5.77e-11 | 9 |
keratinocyte | 2.57e-09 | 5 |
acinar cell | 3.44e-09 | 5 |
epithelial cell of alimentary canal | 1.32e-08 | 20 |
protein secreting cell | 8.41e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.12e-26 | 14 |
membranous layer | 1.12e-26 | 14 |
extraembryonic structure | 1.96e-15 | 24 |
egg chorion | 1.07e-14 | 3 |
amnion | 1.76e-14 | 7 |
chorion | 7.42e-14 | 7 |
somatic layer of lateral plate mesoderm | 9.64e-13 | 8 |
organ component layer | 9.85e-12 | 66 |
mouth | 5.94e-09 | 29 |
stomodeum | 5.94e-09 | 29 |
saliva-secreting gland | 8.41e-08 | 6 |
gland of oral region | 8.41e-08 | 6 |
gland of foregut | 8.41e-08 | 6 |
oral gland | 8.41e-08 | 6 |
oral cavity | 8.41e-08 | 6 |
oral opening | 8.45e-08 | 22 |