FFCP PHASE1:Hg19::chr19:1490431..1490442,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54760 | |EntrezGene=54760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8746 | |HGNC=8746 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-21bp_to_uc002lta.2_5end | |association_with_transcript=-21bp_to_uc002lta.2_5end | ||
|cluster_id=chr19:1490431..1490442,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_6_at_PCSK4_5end | |description=CAGE_peak_6_at_PCSK4_5end | ||
|id=chr19:1490431..1490442,- | |id=chr19:1490431..1490442,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.08e-27;10!UBERON:0005564;2.08e-27;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!9.57e-23!41;UBERON:0001890!9.57e-23!41;UBERON:0006240!9.57e-23!41;UBERON:0003080!3.40e-22!42;UBERON:0001049!4.96e-20!57;UBERON:0005068!4.96e-20!57;UBERON:0006241!4.96e-20!57;UBERON:0007135!4.96e-20!57;UBERON:0002616!2.52e-19!59;UBERON:0001869!1.13e-17!32;UBERON:0007023!1.19e-16!115;UBERON:0001893!1.23e-16!34;UBERON:0000955!3.72e-16!69;UBERON:0006238!3.72e-16!69;UBERON:0003056!4.19e-15!61;UBERON:0003112!5.15e-14!1;UBERON:0000032!5.15e-14!1;UBERON:0005253!5.15e-14!1;UBERON:0003128!5.15e-14!1;UBERON:0002241!5.15e-14!1;UBERON:0001703!5.15e-14!1;UBERON:0004761!5.15e-14!1;UBERON:0009617!5.15e-14!1;UBERON:0007190!1.61e-13!1;UBERON:0001017!1.79e-13!82;UBERON:0001882!1.83e-13!1;UBERON:0005403!1.83e-13!1;UBERON:0002022!2.07e-13!1;UBERON:0000369!2.51e-13!4;UBERON:0002435!2.51e-13!4;UBERON:0000204!2.51e-13!4;UBERON:0010082!2.51e-13!4;UBERON:0003075!5.72e-13!86;UBERON:0007284!5.72e-13!86;UBERON:0005743!8.29e-13!86;UBERON:0002791!9.80e-13!33;UBERON:0002020!2.31e-12!34;UBERON:0003528!2.31e-12!34;UBERON:0002346!2.40e-12!90;UBERON:0000073!1.65e-11!94;UBERON:0001016!1.65e-11!94;UBERON:0000349!8.71e-11!5;UBERON:0000033!1.36e-10!123;UBERON:0000153!4.82e-10!129;UBERON:0007811!4.82e-10!129;UBERON:0000200!3.56e-09!6;UBERON:0002619!7.83e-09!22;UBERON:0001894!4.27e-08!7;UBERON:0006222!4.27e-08!7;UBERON:0009663!5.28e-08!7;UBERON:0000956!7.76e-08!25;UBERON:0000203!7.76e-08!25;UBERON:0001873!1.28e-07!2;UBERON:0010122!1.28e-07!2;UBERON:0001954!1.54e-07!2;UBERON:0003022!1.54e-07!2;UBERON:0002421!1.54e-07!2;UBERON:0002600!1.54e-07!2;UBERON:0001897!1.75e-07!2;UBERON:0000473!2.37e-07!8;UBERON:0001871!4.02e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.50e-34;8!UBERON:0003135;4.86e-25;11!UBERON:0000991;1.02e-13;21!UBERON:0003101;3.77e-13;22!UBERON:0000079;3.77e-13;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.50e-34,8;UBERON:0003135,4.86e-25,11;UBERON:0000991,1.02e-13,21;UBERON:0009196,1.02e-13,21;UBERON:0009117,1.02e-13,21;UBERON:0005564,1.02e-13,21;UBERON:0004176,3.77e-13,22;UBERON:0003101,3.77e-13,22;UBERON:0000079,3.77e-13,22;UBERON:0002323,7.30e-07,46 | |||
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|short_description=p6@PCSK4 | |short_description=p6@PCSK4 | ||
}} | }} |
Latest revision as of 06:11, 16 September 2015
Short description: | p6@PCSK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PCSK4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -21bp_to_uc002lta.2_5end |
EntrezGene: | PCSK4 |
HGNC: | 8746 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 6.50e-34 | 8 |
male reproductive organ | 4.86e-25 | 11 |
gonad | 1.02e-13 | 21 |
indifferent external genitalia | 1.02e-13 | 21 |
indifferent gonad | 1.02e-13 | 21 |
gonad primordium | 1.02e-13 | 21 |
external genitalia | 3.77e-13 | 22 |
male organism | 3.77e-13 | 22 |
male reproductive system | 3.77e-13 | 22 |
body cavity | 7.30e-07 | 46 |