FFCP PHASE1:Hg19::chr19:15939795..15939814,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652995 | |EntrezGene=652995 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=37126 | |HGNC=37126 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=38bp_to_ENST00000397381,NR_015379,uc002nbr.3_5end | |association_with_transcript=38bp_to_ENST00000397381,NR_015379,uc002nbr.3_5end | ||
|cluster_id=chr19:15939795..15939814,+ | |||
|coexpression_cluster_id=C3759 | |||
|description=CAGE_peak_1_at_UCA1_5end | |description=CAGE_peak_1_at_UCA1_5end | ||
|id=chr19:15939795..15939814,+ | |id=chr19:15939795..15939814,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.15e-17!254;CL:0002076!9.41e-10!43;CL:0002541!2.13e-08!3;CL:0002150!3.22e-08!3;CL:0000861!3.22e-08!3;CL:0000223!5.12e-08!59;CL:0002231!5.62e-07!3 | |ontology_enrichment_celltype=CL:0000066!1.15e-17!254;CL:0002076!9.41e-10!43;CL:0002541!2.13e-08!3;CL:0002150!3.22e-08!3;CL:0000861!3.22e-08!3;CL:0000223!5.12e-08!59;CL:0002231!5.62e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.04e-15;3!CL:1000415;3.34e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.48e-15,3;CL:1000415,3.89e-11,2;CL:0000066,3.90e-11,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.18e-25!106;DOID:0050687!1.67e-20!143;DOID:1749!4.35e-16!14;DOID:162!1.53e-13!235;DOID:14566!5.50e-13!239;DOID:299!1.26e-09!25 | |ontology_enrichment_disease=DOID:305!2.18e-25!106;DOID:0050687!1.67e-20!143;DOID:1749!4.35e-16!14;DOID:162!1.53e-13!235;DOID:14566!5.50e-13!239;DOID:299!1.26e-09!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;6.68e-22;14!DOID:299;1.74e-11;25!DOID:305;8.64e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.28e-26,106;DOID:1749,8.48e-22,14;DOID:0050687,4.26e-21,143;DOID:162,1.29e-13,235;DOID:14566,3.40e-13,239;DOID:299,1.65e-11,25;DOID:7,5.64e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001008!2.41e-14!45;UBERON:0006554!3.91e-13!44;UBERON:0002294!6.16e-13!7;UBERON:0001173!6.16e-13!7;UBERON:0004912!6.16e-13!7;UBERON:0003064!9.19e-10!37;UBERON:0000344!3.26e-09!12;UBERON:0004119!3.29e-09!169;UBERON:0000925!3.29e-09!169;UBERON:0006595!3.29e-09!169;UBERON:0000162!1.10e-08!14;UBERON:0001353!1.10e-08!14;UBERON:0000163!1.10e-08!14;UBERON:0006866!1.10e-08!14;UBERON:0000164!1.10e-08!14;UBERON:0000931!1.10e-08!14;UBERON:0000476!2.13e-08!3;UBERON:0000920!2.13e-08!3;UBERON:0005156!3.49e-08!59;UBERON:0000990!3.49e-08!59;UBERON:0002110!3.71e-08!3;UBERON:0006242!3.71e-08!3;UBERON:0004122!5.16e-08!15;UBERON:0001046!7.56e-08!19;UBERON:0000489!1.49e-07!32;UBERON:0001007!2.94e-07!155;UBERON:0001555!2.94e-07!155;UBERON:0007026!2.94e-07!155;UBERON:0000077!3.99e-07!130;UBERON:0000058!4.10e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;2.21e-18;7!UBERON:0001173;2.21e-18;7!UBERON:0003124;1.04e-15;3!UBERON:0000920;1.04e-15;3!UBERON:0002394;2.06e-12;4!UBERON:0003928;2.06e-12;4!UBERON:0002110;9.65e-08;3!UBERON:0000474;4.01e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.48e-15,3;UBERON:0002294,3.51e-14,9;UBERON:0001173,3.51e-14,9;UBERON:0004912,3.51e-14,9;UBERON:0003124,1.09e-11,7;UBERON:0002394,2.15e-08,6;UBERON:0003928,2.15e-08,6;UBERON:0002110,1.07e-07,3;UBERON:0006242,1.07e-07,3;UBERON:0005795,1.34e-07,22;UBERON:0003134,2.07e-07,37;UBERON:0000474,2.07e-07,37 | |||
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| ||
|short_description=p1@UCA1 | |short_description=p1@UCA1 | ||
}} | }} |
Latest revision as of 08:31, 16 September 2015
Short description: | p1@UCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UCA1_5end |
Coexpression cluster: | C3759_papillotubular_clear_epidermoid_acantholytic_transitionalcell_rectal_mucinous |
Association with transcript: | 38bp_to_ENST00000397381, NR_015379, uc002nbr.3_5end |
EntrezGene: | UCA1 |
HGNC: | 37126 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.48e-15 | 3 |
epithelial cell of gall bladder | 3.89e-11 | 2 |
epithelial cell | 3.90e-11 | 253 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.48e-15 | 3 |
biliary system | 3.51e-14 | 9 |
biliary tree | 3.51e-14 | 9 |
biliary bud | 3.51e-14 | 9 |
chorion | 1.09e-11 | 7 |
bile duct | 2.15e-08 | 6 |
digestive system duct | 2.15e-08 | 6 |
gallbladder | 1.07e-07 | 3 |
gall bladder primordium | 1.07e-07 | 3 |
embryonic uterus | 1.34e-07 | 22 |
female reproductive organ | 2.07e-07 | 37 |
female reproductive system | 2.07e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.28e-26 | 106 |
squamous cell carcinoma | 8.48e-22 | 14 |
cell type cancer | 4.26e-21 | 143 |
cancer | 1.29e-13 | 235 |
disease of cellular proliferation | 3.40e-13 | 239 |
adenocarcinoma | 1.65e-11 | 25 |
disease of anatomical entity | 5.64e-07 | 39 |