FFCP PHASE1:Hg19::chr12:50643712..50643724,-: Difference between revisions
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|id=chr12:50643712..50643724,-
|short_description=p17@LIMA1
|description=CAGE_peak_17_at_LIMA1_5end
|association_with_transcript=-36bp_to_ENST00000550592_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51474 | |EntrezGene=51474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24636 | |HGNC=24636 | ||
|TSSclassifier=strong | |||
|UniProt=F8VVQ7 | |UniProt=F8VVQ7 | ||
|association_with_transcript=-36bp_to_ENST00000550592_5end | |||
|cluster_id=chr12:50643712..50643724,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_17_at_LIMA1_5end | |||
|id=chr12:50643712..50643724,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002537;2.75e-16;5!CL:0002541;1.44e-12;3!CL:0000349;2.59e-11;19!CL:0000319;1.68e-09;1!CL:0002379;1.68e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,2.69e-16,5;CL:0002541,1.44e-12,3;CL:0000349,2.56e-11,19;CL:0002379,1.15e-09,1;CL:0000319,2.08e-09,1;CL:0000062,2.28e-07,11;CL:0000375,2.28e-07,11;CL:0000335,2.28e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000335;2.11e-07;11 | |||
|ontology_enrichment_disease=DOID:305!2.03e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:0060060;5.54e-10;1!DOID:0060061;5.54e-10;1!DOID:8691;5.54e-10;1!DOID:2355;8.53e-10;1!DOID:3620;1.68e-09;1!DOID:3030;1.68e-09;1!DOID:3565;1.68e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,5.79e-10,1;DOID:0060061,5.79e-10,1;DOID:8691,5.79e-10,1;DOID:2355,9.70e-10,1;DOID:3620,1.15e-09,1;DOID:3565,1.15e-09,1;DOID:3030,2.08e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!7.55e-11!14;UBERON:0000158!7.55e-11!14;UBERON:0000478!1.71e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.27e-21;10!UBERON:0000158;1.27e-21;10!UBERON:0003124;1.44e-12;3!UBERON:0000920;1.44e-12;3!UBERON:0000305;8.66e-12;7!UBERON:0001301;1.68e-09;1!UBERON:0000478;6.48e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.03e-15,14;UBERON:0000158,2.03e-15,14;UBERON:0000920,1.44e-12,3;UBERON:0000305,8.51e-12,7;UBERON:0004871,2.20e-10,8;UBERON:0001301,1.62e-09,1;UBERON:0000478,6.43e-09,24 | |||
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| ||
|short_description=p17@LIMA1 | |||
}} | }} |
Latest revision as of 18:34, 18 September 2015
Short description: | p17@LIMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_LIMA1_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -36bp_to_ENST00000550592_5end |
EntrezGene: | LIMA1 |
HGNC: | 24636 |
UniProt: | F8VVQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 2.69e-16 | 5 |
chorionic membrane mesenchymal stem cell | 1.44e-12 | 3 |
extraembryonic cell | 2.56e-11 | 19 |
meningothelial cell | 1.15e-09 | 1 |
mucus secreting cell | 2.08e-09 | 1 |
osteoblast | 2.28e-07 | 11 |
osteoprogenitor cell | 2.28e-07 | 11 |
mesenchyme condensation cell | 2.28e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.03e-15 | 14 |
membranous layer | 2.03e-15 | 14 |
egg chorion | 1.44e-12 | 3 |
amnion | 8.51e-12 | 7 |
somatic layer of lateral plate mesoderm | 2.20e-10 | 8 |
epididymis | 1.62e-09 | 1 |
extraembryonic structure | 6.43e-09 | 24 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 5.79e-10 | 1 |
cutaneous T cell lymphoma | 5.79e-10 | 1 |
mycosis fungoides | 5.79e-10 | 1 |
anemia | 9.70e-10 | 1 |
central nervous system cancer | 1.15e-09 | 1 |
meningioma | 1.15e-09 | 1 |
mucinous adenocarcinoma | 2.08e-09 | 1 |