FFCP PHASE1:Hg19::chr1:161044552..161044633,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81607 | |EntrezGene=81607 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=19688 | |HGNC=19688 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-136bp_to_uc010pjy.1_5end | |association_with_transcript=-136bp_to_uc010pjy.1_5end | ||
|cluster_id=chr1:161044552..161044633,- | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_2_at_PVRL4_5end | |description=CAGE_peak_2_at_PVRL4_5end | ||
|id=chr1:161044552..161044633,- | |id=chr1:161044552..161044633,- | ||
|ontology_enrichment_celltype=CL:0000066!1.12e-17!254;CL:0002076!2.49e-11!43;CL:0000223!7.00e-09!59;CL:0000076!1.16e-08!62;CL:0002321!3.10e-07!248;CL:0002368!6.20e-07!13;CL:0000220!6.54e-07!246 | |ontology_enrichment_celltype=CL:0000066!1.12e-17!254;CL:0002076!2.49e-11!43;CL:0000223!7.00e-09!59;CL:0000076!1.16e-08!62;CL:0002321!3.10e-07!248;CL:0002368!6.20e-07!13;CL:0000220!6.54e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.70e-12;19!CL:0002368;8.03e-10;13!CL:0002076;3.77e-09;42!CL:0000244;6.71e-09;4!CL:0000731;6.71e-09;4!CL:0002159;2.90e-08;14!CL:0002577;7.53e-08;3!CL:0002541;1.26e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.27e-20,253;CL:0002076,1.13e-12,42;CL:0000349,1.69e-12,19;CL:0000223,1.77e-12,58;CL:0002368,1.01e-09,13;CL:0000244,7.00e-09,4;CL:0000731,7.00e-09,4;CL:0002159,1.96e-08,14;CL:0002577,7.47e-08,3;CL:0002541,1.25e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;5.12e-09;58 | |||
|ontology_enrichment_disease=DOID:0050687!7.64e-08!143;DOID:1749!5.57e-07!14;DOID:305!7.75e-07!106 | |ontology_enrichment_disease=DOID:0050687!7.64e-08!143;DOID:1749!5.57e-07!14;DOID:305!7.75e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.48e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.25e-08,106;DOID:1749,2.32e-08,14;DOID:0050687,2.96e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0005631!8.94e-11!14;UBERON:0000158!8.94e-11!14;UBERON:0003124!1.70e-08!7;UBERON:0004923!2.66e-08!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;9.01e-14;10!UBERON:0000158;9.01e-14;10!UBERON:0000478;7.48e-13;24!UBERON:0000365;2.19e-10;5!UBERON:0001987;1.02e-09;4!UBERON:0005910;1.45e-08;6!UBERON:0000305;3.32e-08;7!UBERON:0003124;1.26e-07;3!UBERON:0000920;1.26e-07;3!UBERON:0000486;4.71e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.51e-21,14;UBERON:0000158,1.51e-21,14;UBERON:0003124,1.13e-15,7;UBERON:0000478,8.02e-13,24;UBERON:0000365,2.45e-10,5;UBERON:0001987,1.01e-09,4;UBERON:0004340,1.01e-09,4;UBERON:0005910,1.59e-08,6;UBERON:0000305,3.33e-08,7;UBERON:0000920,1.25e-07,3;UBERON:0004923,1.76e-07,66;UBERON:0004871,4.27e-07,8 | |||
|phase1_expression=0.363356758541113,0,0,0,0.446961094427288,1.74467704820074,0,0,0,0.491467873003018,0,25.5576405392302,25.3216299099315,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.328402357799783,0.157421562627358,0,0,0.154816123316076,0,0.30120591877825,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,2.3858578411533,0.486634870302636,0.0945348171640679,0,0.087834785693126,0,2.18577172975525,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0.949265659568129,0,0,0,5.23312862571041,0.496971951695318,0.25326102332916,0,0.286836620748814,0.354668382198357,0.560677600142307,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0.773043412653187,1.36373060295417,0.286804595389004,0.121973706129595,0.265059536642971,0,1.55491582523056,0.504641701751257,0,0,0,2.76269842704961,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.878002283269004,1.1240175325762,0.201057944823262,0.833296006426766,0.325808305310325,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,1.87467667973554,2.68771405118175,1.41775097242386,5.1943943167652,2.03443756959773,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0.845302752556,0,0,0,0,0.266422179016099,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0.699810938274399,0,0,0,0,0,0,0.144781306667579,0,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27407504055985,0,0,0,0,0,0,0,0,0,63.050534860822,56.588049433569,32.6581516796055,0.496215615637554,0,0,0,0,0.160853921143607,0,0,0.355123450626254,0.0821271560138091,0,0.116210378459959,0,0.601519410909855,6.90607417019222,0,0,0,0.451199612907412,0.231046011313244,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0.223874754722178,0.219259876645935,0,0,0,0,1.33953315142039,0,0.247528499761764,1.72279661398852,1.95018073810956,0,0.096670718292122,0,0.15350367472613,0,0.107420244868274,0,0,0,1.65284915360978,2.49847087574638,2.4246415373971,3.0347334256665,0,0,0,0,0,0,0,0.429374660225974,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0.202182481573316,1.58510321173008,0,0,0,0,0,0.141405431953713,0,0,0,0,0.578775534266688,0,0.202910376962704,0,0,0.143411352204052,0,0,0,0.211107635297664,1.64647446479951,0,0,2.02066436723575,2.01090682660736,1.08890984861323,1.50630081242847,3.87454835404107,5.05414427002877,11.0857538384169,9.18893600827838,0,0,0,0,0,0,0,0,0.747768497892312,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0.1605880751037,0,0,0,0,0,0,0,0.835218521685727,0,0,0.33307196799782,0,0,0,0,0.111443384277478,0,45.6001965848988,17.223951488293,86.6193179919835,0,0,0,0.494411622680279,0,0,0,0,10.8404803452284,0.369254416383208,0,0,0,0,0.690503839458535,0,0,0,0,0,0.260427761085233,0,0,0,2.2882828526349,3.78220290828698,0,0,0,0,0,0,0,0,0,0.653630781113941,3.90386483980089,0.153900517007594,0,7.60860884480598,0.179515288819544,0,47.8501739597879,7.87739303256016,32.5151213371367,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,1.18608451472249,0.123563938946503,0,0,0,0,0,9.5875663276724,0,0,0,0,0,6.76455387365216,2.90326935912292,0,0,0,0,0,2.08012009519708,0,2.05784034570193,2.61177619741208,0,15.6507289549171,0,0,0,0.581934098930517,0,0.225980740780532,4.52238351334278,0,0,0.391102765469606,0.0801588202515337,0,2.19790570540343,0,0,0,0,0.124252535565433,19.562604873194,0.135904206073614,0.418411385249333,0,0,0,0,0,0,0.788662062837943,0.837847203816763,0.229160424011684,0,0.199679000498991,0,0,0,0,0,4.72699093843342,5.52186251153815,4.58344098208457,0,0,0,0,0.643012593860077,0.137539436597234,0.83088067605837,1.799791132412,3.0952078182318,0,2.0126081255956,0,0.104909176269996,0,0.179287339332845,4.60596473566669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.94029079744861,0,26.1719915685775,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0.276697269872462,2.12466693535581,0.151649117541648,0.570930667089935,6.35217713185063,0,1.30428925749743,0.597019211547496,0,0,0,0,0,0.686520205190771,0.151230923763239,0,0,0,0,0.310525913752519,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,1.20008329398946,0,0,8.83294287600557,1.15571898244382,1.07220795687463,0,0,0.694567422971502,0,0.179088841081487,0.617602894321944,0.219284049578707,2.47364804324233,0.578742114812744,0,0.512483037175893,6.56317649289277,0,0,0.194860308839388,0.930053882193542,0.327130788511688,0,0,0.211312123358627,3.9997479170986,0,0,0,0,5.17554178561945,3.11038630016486,0,0.215649622793364,0,0.218419276384028,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29997679905538,0.471878893390961,0.36685719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| ||
|short_description=p2@PVRL4 | |short_description=p2@PVRL4 | ||
}} | }} |
Latest revision as of 04:33, 18 September 2015
Short description: | p2@PVRL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PVRL4_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | -136bp_to_uc010pjy.1_5end |
EntrezGene: | PVRL4 |
HGNC: | 19688 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.27e-20 | 253 |
endo-epithelial cell | 1.13e-12 | 42 |
extraembryonic cell | 1.69e-12 | 19 |
endodermal cell | 1.77e-12 | 58 |
respiratory epithelial cell | 1.01e-09 | 13 |
transitional epithelial cell | 7.00e-09 | 4 |
urothelial cell | 7.00e-09 | 4 |
general ecto-epithelial cell | 1.96e-08 | 14 |
placental epithelial cell | 7.47e-08 | 3 |
chorionic membrane mesenchymal stem cell | 1.25e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.51e-21 | 14 |
membranous layer | 1.51e-21 | 14 |
chorion | 1.13e-15 | 7 |
extraembryonic structure | 8.02e-13 | 24 |
urothelium | 2.45e-10 | 5 |
placenta | 1.01e-09 | 4 |
allantois | 1.01e-09 | 4 |
transitional epithelium | 1.59e-08 | 6 |
amnion | 3.33e-08 | 7 |
egg chorion | 1.25e-07 | 3 |
organ component layer | 1.76e-07 | 66 |
somatic layer of lateral plate mesoderm | 4.27e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.25e-08 | 106 |
squamous cell carcinoma | 2.32e-08 | 14 |
cell type cancer | 2.96e-07 | 143 |