FFCP PHASE1:Hg19::chr1:75180314..75180323,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:75180314..75180323,- | |||
|coexpression_cluster_id=C753 | |||
|description=CAGE_peak_at_chr1:75180314..75180323,- | |description=CAGE_peak_at_chr1:75180314..75180323,- | ||
|id=chr1:75180314..75180323,- | |id=chr1:75180314..75180323,- | ||
|ontology_enrichment_celltype=CL:0002620!8.21e-14!23;CL:0002579!5.09e-08!3 | |ontology_enrichment_celltype=CL:0002620!8.21e-14!23;CL:0002579!5.09e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:1000487;2.37e-15;2!CL:0002586;6.73e-11;3!CL:0002504;1.09e-10;3!CL:1000279;1.09e-10;3!CL:1000280;1.09e-10;3!CL:0002622;1.09e-10;3!CL:0000149;1.70e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000487,2.05e-15,2;CL:0002586,6.73e-11,3;CL:0002622,1.09e-10,3;CL:0002504,1.20e-10,3;CL:1000279,1.20e-10,3;CL:1000280,1.20e-10,3;CL:0000149,1.70e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0009497;9.94e-10;13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4362;5.08e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,5.08e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003688!7.47e-07!6;UBERON:0002358!7.47e-07!6;UBERON:0003684!7.47e-07!6;UBERON:0001178!7.47e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002367;3.30e-11;11!UBERON:0010147;3.30e-11;11!UBERON:0001781;6.73e-11;3!UBERON:0001782;6.73e-11;3!UBERON:0003937;2.34e-10;12!UBERON:0005399;2.34e-10;12!UBERON:0002394;2.03e-08;4!UBERON:0003928;2.03e-08;4!UBERON:0000966;4.79e-07;5!UBERON:0005388;4.79e-07;5!UBERON:0001802;4.79e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002367,3.14e-11,11;UBERON:0010147,3.14e-11,11;UBERON:0009846,3.14e-11,11;UBERON:0003353,3.14e-11,11;UBERON:0004902,3.14e-11,11;UBERON:0003820,3.14e-11,11;UBERON:0009847,3.14e-11,11;UBERON:0001782,6.73e-11,3;UBERON:0005424,6.73e-11,3;UBERON:0003937,2.24e-10,12;UBERON:0005399,2.24e-10,12;UBERON:0000162,4.95e-09,14;UBERON:0001353,4.95e-09,14;UBERON:0000163,4.95e-09,14;UBERON:0006866,4.95e-09,14;UBERON:0000164,4.95e-09,14;UBERON:0000931,4.95e-09,14;UBERON:0003929,7.27e-09,54;UBERON:0001781,1.70e-08,4;UBERON:0004122,1.71e-08,15;UBERON:0001046,6.77e-07,19 | |||
|phase1_expression=0,0.428201047781966,0.986680828671798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.937285727335186,0,0.570471821544449,0,0.117434498643765,0.485618833104395,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.640672166455702,0,0.600182192168805,0,0,0.37223371266318,0.168776332241266,0.292311015483596,0.252433774244115,0.460249493211497,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0.714889968290738,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.512556597022804,0.511707249066704,0.482561763430822,0,0,0,0,0,0,0.483437798366489,0,0,1.7222167224691,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4121086292577,0.103041011647722,0,0.495056999523528,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0.10115778085555,0,0.62962469366128,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,1.2591072030832,0,0,0,0,0,0,0,0,0.545999645631943,1.83827061539827,0,0,0,0,0,0,0,0,0,0,0.785992328104969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0.63337622438398,0,0,0,0,0.123084805461069,0,0,4.11748701753901,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,5.12010778539254,0.557694977114413,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,4.13395422361945,0.677386656526276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.776503360757966,0.124192805882767,0.276697269872462,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0.172214979660816,0,0,0,0,0.76736622782191,0,0.157265941855896,0,0,0,0,0.558644917973244,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0.428201047781966,0.986680828671798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.937285727335186,0,0.570471821544449,0,0.117434498643765,0.485618833104395,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.640672166455702,0,0.600182192168805,0,0,0.37223371266318,0.168776332241266,0.292311015483596,0.252433774244115,0.460249493211497,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0.714889968290738,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.512556597022804,0.511707249066704,0.482561763430822,0,0,0,0,0,0,0.483437798366489,0,0,1.7222167224691,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4121086292577,0.103041011647722,0,0.495056999523528,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0.10115778085555,0,0.62962469366128,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,1.2591072030832,0,0,0,0,0,0,0,0,0.545999645631943,1.83827061539827,0,0,0,0,0,0,0,0,0,0,0.785992328104969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0.63337622438398,0,0,0,0,0.123084805461069,0,0,4.11748701753901,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,5.12010778539254,0.557694977114413,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,4.13395422361945,0.677386656526276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.776503360757966,0.124192805882767,0.276697269872462,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0.172214979660816,0,0,0,0,0.76736622782191,0,0.157265941855896,0,0,0,0,0.558644917973244,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr1:75180314..75180323,- | |short_description=p@chr1:75180314..75180323,- | ||
}} | }} |
Latest revision as of 10:18, 28 July 2015
Short description: | p@chr1:75180314..75180323, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:75180314..75180323, - |
Coexpression cluster: | C753_Retinal_retina_eye_kidney_caudate_corpus_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of prostate | 2.05e-15 | 2 |
retinal pigment epithelial cell | 6.73e-11 | 3 |
prostate stromal cell | 1.09e-10 | 3 |
enteric smooth muscle cell | 1.20e-10 | 3 |
smooth muscle cell of large intestine | 1.20e-10 | 3 |
smooth muscle cell of colon | 1.20e-10 | 3 |
visual pigment cell | 1.70e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
prostate gland | 3.14e-11 | 11 |
male accessory sex gland | 3.14e-11 | 11 |
embryonic cloacal epithelium | 3.14e-11 | 11 |
epithelium of hindgut | 3.14e-11 | 11 |
urogenital sinus epithelium | 3.14e-11 | 11 |
prostate bud | 3.14e-11 | 11 |
prostate field | 3.14e-11 | 11 |
pigmented layer of retina | 6.73e-11 | 3 |
presumptive retinal pigmented epithelium | 6.73e-11 | 3 |
sex gland | 2.24e-10 | 12 |
male reproductive gland | 2.24e-10 | 12 |
cloaca | 4.95e-09 | 14 |
anal region | 4.95e-09 | 14 |
embryonic cloaca | 4.95e-09 | 14 |
terminal part of digestive tract | 4.95e-09 | 14 |
primitive urogenital sinus | 4.95e-09 | 14 |
proctodeum | 4.95e-09 | 14 |
gut epithelium | 7.27e-09 | 54 |
layer of retina | 1.70e-08 | 4 |
genitourinary system | 1.71e-08 | 15 |
hindgut | 6.77e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 5.08e-07 | 5 |