FFCP PHASE1:Hg19::chr6:32152020..32152040,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=177 | |EntrezGene=177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=320 | |HGNC=320 | ||
|TSSclassifier=strong | |||
|UniProt=Q15109,Q3L1R8,Q101R2,Q3L1R6,Q3L1R7,A7Y2U9 | |UniProt=Q15109,Q3L1R8,Q101R2,Q3L1R6,Q3L1R7,A7Y2U9 | ||
|association_with_transcript=0bp_to_ENST00000375055,ENST00000484849,uc003oal.1,uc003oam.1,uc003oan.1,uc003oao.1,uc003oap.1,uc003oaq.1,uc003oas.1,uc003oat.1,uc003oau.1,uc010jtv.1,uc010jtw.1,uc011dpo.1,uc011dpp.1,uc011dpq.1,uc011dpr.1,uc011dps.1_5end | |association_with_transcript=0bp_to_ENST00000375055,ENST00000484849,uc003oal.1,uc003oam.1,uc003oan.1,uc003oao.1,uc003oap.1,uc003oaq.1,uc003oas.1,uc003oat.1,uc003oau.1,uc010jtv.1,uc010jtw.1,uc011dpo.1,uc011dpp.1,uc011dpq.1,uc011dpr.1,uc011dps.1_5end | ||
|cluster_id=chr6:32152020..32152040,- | |||
|coexpression_cluster_id=C308 | |||
|description=CAGE_peak_1_at_AGER_5end | |description=CAGE_peak_1_at_AGER_5end | ||
|id=chr6:32152020..32152040,- | |id=chr6:32152020..32152040,- | ||
|ontology_enrichment_celltype=CL:0000039!6.44e-14!7;CL:0000586!6.44e-14!7;CL:0000349!2.11e-09!3;CL:0002577!2.11e-09!3;CL:0002541!4.41e-09!3;CL:0002536!9.33e-07!2 | |ontology_enrichment_celltype=CL:0000039!6.44e-14!7;CL:0000586!6.44e-14!7;CL:0000349!2.11e-09!3;CL:0002577!2.11e-09!3;CL:0002541!4.41e-09!3;CL:0002536!9.33e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.66e-32;19!CL:0002577;1.96e-24;3!CL:0000039;3.66e-18;7!CL:0000586;3.66e-18;7!CL:0002536;1.23e-16;2!CL:0002537;4.12e-15;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.63e-32,19;CL:0002577,2.13e-24,3;CL:0000039,3.91e-18,7;CL:0000586,3.91e-18,7;CL:0002536,1.05e-16,2;CL:0002537,4.23e-15,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.13e-07;10!UBERON:0005564;1.13e-07;10!UBERON:0007123;1.92e-07;5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!6.16e-27!14;UBERON:0000158!6.16e-27!14;UBERON:0003124!4.78e-19!7;UBERON:0000478!2.00e-14!24;UBERON:0004923!3.33e-12!57;UBERON:0001987!1.13e-11!4;UBERON:0004340!1.13e-11!4;UBERON:0000305!2.73e-10!7;UBERON:0000476!4.41e-09!3;UBERON:0000920!4.41e-09!3;UBERON:0004871!6.09e-09!8;UBERON:0004907!9.98e-09!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;2.80e-28;7!UBERON:0005631;3.32e-28;10!UBERON:0000158;3.32e-28;10!UBERON:0000478;1.78e-25;24!UBERON:0001987;1.72e-18;4!UBERON:0002171;8.67e-10;1!UBERON:0006518;8.67e-10;1!UBERON:0008949;8.67e-10;1!UBERON:0000101;8.67e-10;1!UBERON:0002167;8.67e-10;1!UBERON:0000473;1.80e-09;8!UBERON:0002046;1.92e-07;5!UBERON:0003135;5.12e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.49e-44,14;UBERON:0000158,1.49e-44,14;UBERON:0000305,2.57e-28,7;UBERON:0000478,1.75e-25,24;UBERON:0004871,8.95e-25,8;UBERON:0001987,1.83e-18,4;UBERON:0004340,1.83e-18,4;UBERON:0003124,1.99e-18,7;UBERON:0002171,8.68e-10,1;UBERON:0006518,8.68e-10,1;UBERON:0008949,8.68e-10,1;UBERON:0000101,8.68e-10,1;UBERON:0002167,8.68e-10,1;UBERON:0000473,1.80e-09,8;UBERON:0004923,1.95e-08,66;UBERON:0002046,1.88e-07,5;UBERON:0004117,1.88e-07,5;UBERON:0007689,1.88e-07,5;UBERON:0007123,1.88e-07,5;UBERON:0003091,1.88e-07,5;UBERON:0003135,5.12e-07,11 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0.982935746006035,21.6318362071453,3.71350332621293,2.90143676051299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,108.123226823362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0.257640540045629,0.18611685633159,0.168776332241266,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0.236613600079688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63753085735511,3.32870879020994,11.7932214398575,0.496215615637554,0,0,0.256278298511402,0,0.321707842287215,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0.219259876645935,0,0,0.328014645699706,0,50.6961777306794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.6723450015948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6534576910976,3.56357616999166,15.9723565091601,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.628303510868405,1.08647371922008,6.38002319463839,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0.209818352539992,1.26720403823288,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,597.475573316252,136.767745436709,297.423641739286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0.227662191351298,0.354809480650555,0,0,0,0,0,0,0,0,0.280272163313789,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,1.63182127587171,4.27547848424897,9.09759505394965,0,0,0,0,0,2.13233981900981,0.476128862927481,0,0.0620747142958579,4.48527450322454,57.4733839251829,0.404234377916439,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0.982935746006035,21.6318362071453,3.71350332621293,2.90143676051299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,108.123226823362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0.257640540045629,0.18611685633159,0.168776332241266,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0.236613600079688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63753085735511,3.32870879020994,11.7932214398575,0.496215615637554,0,0,0.256278298511402,0,0.321707842287215,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0.219259876645935,0,0,0.328014645699706,0,50.6961777306794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.6723450015948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6534576910976,3.56357616999166,15.9723565091601,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.628303510868405,1.08647371922008,6.38002319463839,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0.209818352539992,1.26720403823288,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,597.475573316252,136.767745436709,297.423641739286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0.227662191351298,0.354809480650555,0,0,0,0,0,0,0,0,0.280272163313789,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,1.63182127587171,4.27547848424897,9.09759505394965,0,0,0,0,0,2.13233981900981,0.476128862927481,0,0.0620747142958579,4.48527450322454,57.4733839251829,0.404234377916439,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p1@AGER | |short_description=p1@AGER | ||
}} | }} |
Latest revision as of 02:08, 18 September 2015
Short description: | p1@AGER |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AGER_5end |
Coexpression cluster: | C308_lung_Hepatocyte_liver_thyroid_heart_left_breast |
Association with transcript: | 0bp_to_ENST00000375055, ENST00000484849, uc003oal.1, uc003oam.1, uc003oan.1, uc003oao.1, uc003oap.1, uc003oaq.1, uc003oas.1, uc003oat.1, uc003oau.1, uc010jtv.1, uc010jtw.1, uc011dpo.1, uc011dpp.1, uc011dpq.1, uc011dpr.1, uc011dps.1_5end |
EntrezGene: | AGER |
HGNC: | 320 |
UniProt: | Q15109Q3L1R8Q101R2Q3L1R6Q3L1R7A7Y2U9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.63e-32 | 19 |
placental epithelial cell | 2.13e-24 | 3 |
germ line cell | 3.91e-18 | 7 |
germ cell | 3.91e-18 | 7 |
amniotic epithelial cell | 1.05e-16 | 2 |
amnion mesenchymal stem cell | 4.23e-15 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.49e-44 | 14 |
membranous layer | 1.49e-44 | 14 |
amnion | 2.57e-28 | 7 |
extraembryonic structure | 1.75e-25 | 24 |
somatic layer of lateral plate mesoderm | 8.95e-25 | 8 |
placenta | 1.83e-18 | 4 |
allantois | 1.83e-18 | 4 |
chorion | 1.99e-18 | 7 |
lower lobe of right lung | 8.68e-10 | 1 |
right lung lobe | 8.68e-10 | 1 |
lower lobe of lung | 8.68e-10 | 1 |
lobe of lung | 8.68e-10 | 1 |
right lung | 8.68e-10 | 1 |
testis | 1.80e-09 | 8 |
organ component layer | 1.95e-08 | 66 |
thyroid gland | 1.88e-07 | 5 |
pharyngeal pouch | 1.88e-07 | 5 |
thyroid diverticulum | 1.88e-07 | 5 |
pharyngeal pouch 2 | 1.88e-07 | 5 |
thyroid primordium | 1.88e-07 | 5 |
male reproductive organ | 5.12e-07 | 11 |