FFCP PHASE1:Hg19::chr15:27111855..27111872,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:27111855..27111872,+
|short_description=p5@GABRA5
|description=CAGE_peak_5_at_GABRA5_5end
|association_with_transcript=0bp_to_NM_000810_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2558 | |EntrezGene=2558 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4079 | |HGNC=4079 | ||
|TSSclassifier=strong | |||
|UniProt=P31644 | |UniProt=P31644 | ||
|association_with_transcript=0bp_to_NM_000810_5end | |||
|cluster_id=chr15:27111855..27111872,+ | |||
|coexpression_cluster_id=C731 | |||
|description=CAGE_peak_5_at_GABRA5_5end | |||
|id=chr15:27111855..27111872,+ | |||
|ontology_enrichment_celltype=CL:0002620!8.86e-10!23;CL:0002334!5.01e-08!12;CL:0000057!7.66e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.16e-14;12!CL:0002615;1.34e-12;3!CL:0002579;2.32e-12;3!CL:0002586;4.72e-12;3!CL:0002580;1.40e-11;3!CL:0000136;2.69e-10;13!CL:0000149;3.84e-09;4!CL:0002617;1.52e-08;2!CL:0002588;6.44e-08;2!CL:0002620;8.74e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,9.74e-15,12;CL:0002615,1.40e-12,3;CL:0002579,2.28e-12,3;CL:0002586,5.40e-12,3;CL:0002580,1.05e-11,3;CL:0000149,4.24e-09,4;CL:0000136,6.83e-09,15;CL:0002617,9.52e-09,2;CL:0002588,7.45e-08,2;CL:0000057,1.65e-07,76;CL:0002620,8.76e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!3.11e-07!5;DOID:450!3.11e-07!5;DOID:66!3.11e-07!5;DOID:423!3.11e-07!5;DOID:0080000!3.11e-07!5;DOID:11722!3.11e-07!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!6.63e-17!61;UBERON:0001869!1.46e-15!32;UBERON:0001893!2.67e-14!34;UBERON:0000956!1.50e-13!25;UBERON:0000203!1.50e-13!25;UBERON:0002791!1.90e-13!33;UBERON:0003075!2.60e-13!86;UBERON:0007284!2.60e-13!86;UBERON:0002346!3.49e-13!90;UBERON:0007625!3.66e-13!11;UBERON:0002020!6.86e-13!34;UBERON:0003528!6.86e-13!34;UBERON:0005743!5.72e-12!86;UBERON:0000153!1.06e-11!129;UBERON:0007811!1.06e-11!129;UBERON:0000033!2.42e-11!123;UBERON:0003688!4.99e-11!6;UBERON:0002358!4.99e-11!6;UBERON:0003684!4.99e-11!6;UBERON:0001178!4.99e-11!6;UBERON:0002780!7.16e-11!41;UBERON:0001890!7.16e-11!41;UBERON:0006240!7.16e-11!41;UBERON:0000924!8.30e-11!173;UBERON:0006601!8.30e-11!173;UBERON:0000475!8.57e-11!365;UBERON:0000073!9.62e-11!94;UBERON:0001016!9.62e-11!94;UBERON:0004121!9.65e-11!169;UBERON:0000064!1.29e-10!219;UBERON:0002619!1.59e-10!22;UBERON:0003080!1.77e-10!42;UBERON:0001017!5.48e-10!82;UBERON:0002616!9.71e-10!59;UBERON:0000955!1.23e-09!69;UBERON:0006238!1.23e-09!69;UBERON:0001049!2.19e-09!57;UBERON:0005068!2.19e-09!57;UBERON:0006241!2.19e-09!57;UBERON:0007135!2.19e-09!57;UBERON:0001950!1.87e-08!20;UBERON:0001871!2.18e-08!7;UBERON:0000349!2.23e-08!5;UBERON:0000019!7.17e-08!19;UBERON:0000047!7.17e-08!19;UBERON:0004088!7.17e-08!19;UBERON:0003072!7.17e-08!19;UBERON:0003071!7.17e-08!19;UBERON:0004128!7.17e-08!19;UBERON:0000970!2.43e-07!20;UBERON:0002104!7.30e-07!21;UBERON:0001456!7.30e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;3.27e-23;6!UBERON:0002358;3.27e-23;6!UBERON:0003684;3.27e-23;6!UBERON:0001178;3.27e-23;6!UBERON:0004457;3.10e-15;9!UBERON:0000042;3.10e-15;9!UBERON:0001781;4.72e-12;3!UBERON:0001782;4.72e-12;3!UBERON:0007625;2.37e-11;11!UBERON:0005406;3.49e-09;2!UBERON:0000310;4.77e-09;10!UBERON:0001876;2.75e-08;2!UBERON:0001443;3.40e-08;11!UBERON:0000966;2.18e-07;5!UBERON:0005388;2.18e-07;5!UBERON:0001802;2.18e-07;5!UBERON:0000349;5.19e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.37e-23,6;UBERON:0002358,3.37e-23,6;UBERON:0003684,3.37e-23,6;UBERON:0001178,3.37e-23,6;UBERON:0001782,5.40e-12,3;UBERON:0005424,5.40e-12,3;UBERON:0007625,2.20e-11,11;UBERON:0004457,3.11e-11,12;UBERON:0000042,3.11e-11,12;UBERON:0000310,3.35e-09,10;UBERON:0005406,3.50e-09,2;UBERON:0001781,4.24e-09,4;UBERON:0001876,2.09e-08,2;UBERON:0001443,2.47e-08,11;UBERON:0000349,3.48e-07,5;UBERON:0004923,8.10e-07,66 | |||
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| ||
|short_description=p5@GABRA5 | |||
}} | }} |
Latest revision as of 01:34, 17 September 2015
Short description: | p5@GABRA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GABRA5_5end |
Coexpression cluster: | C731_Adipocyte_Preadipocyte_adipose_Wilms_salivary_Mesenchymal_epididymis |
Association with transcript: | 0bp_to_NM_000810_5end |
EntrezGene: | GABRA5 |
HGNC: | 4079 |
UniProt: | P31644 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 9.74e-15 | 12 |
adipocyte of omentum tissue | 1.40e-12 | 3 |
omentum preadipocyte | 2.28e-12 | 3 |
retinal pigment epithelial cell | 5.40e-12 | 3 |
preadipocyte of the breast | 1.05e-11 | 3 |
visual pigment cell | 4.24e-09 | 4 |
fat cell | 6.83e-09 | 15 |
adipocyte of breast | 9.52e-09 | 2 |
smooth muscle cell of the umbilical vein | 7.45e-08 | 2 |
fibroblast | 1.65e-07 | 76 |
skin fibroblast | 8.76e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.37e-23 | 6 |
peritoneum | 3.37e-23 | 6 |
abdominal cavity | 3.37e-23 | 6 |
visceral peritoneum | 3.37e-23 | 6 |
pigmented layer of retina | 5.40e-12 | 3 |
presumptive retinal pigmented epithelium | 5.40e-12 | 3 |
pigment epithelium of eye | 2.20e-11 | 11 |
cavity lining | 3.11e-11 | 12 |
serous membrane | 3.11e-11 | 12 |
breast | 3.35e-09 | 10 |
perirenal fat | 3.50e-09 | 2 |
layer of retina | 4.24e-09 | 4 |
amygdala | 2.09e-08 | 2 |
chest | 2.47e-08 | 11 |
limbic system | 3.48e-07 | 5 |
organ component layer | 8.10e-07 | 66 |