FFCP PHASE1:Hg19::chr9:107666048..107666061,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=19 | |EntrezGene=19 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=29 | |HGNC=29 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NS76 | |UniProt=Q9NS76 | ||
|association_with_transcript=-1bp_to_AB037924_5end | |association_with_transcript=-1bp_to_AB037924_5end | ||
|cluster_id=chr9:107666048..107666061,- | |||
|coexpression_cluster_id=C129 | |||
|description=CAGE_peak_7_at_ABCA1_5end | |description=CAGE_peak_7_at_ABCA1_5end | ||
|id=chr9:107666048..107666061,- | |id=chr9:107666048..107666061,- | ||
|ontology_enrichment_celltype=CL:0000181!1.06e-12!12;CL:0000417!1.06e-12!12;CL:0000668!1.06e-12!12;CL:0000414!1.06e-12!12;CL:0000412!1.06e-12!12;CL:0000182!1.06e-12!12 | |ontology_enrichment_celltype=CL:0000181!1.06e-12!12;CL:0000417!1.06e-12!12;CL:0000668!1.06e-12!12;CL:0000414!1.06e-12!12;CL:0000412!1.06e-12!12;CL:0000182!1.06e-12!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.55e-09;12!CL:0000569;1.86e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.55e-09,12;CL:0000569,2.04e-07,4;CL:0000011,2.04e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.41e-10;11!UBERON:0009497;1.13e-08;13!UBERON:0003104;3.87e-08;31!CL:0000011;1.86e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!5.77e-12!19;UBERON:0006925!5.77e-12!19;UBERON:0008836!5.77e-12!19;UBERON:0005057!1.60e-11!26;UBERON:0008835!5.12e-10!22;UBERON:0003894!5.12e-10!22;UBERON:0009854!1.75e-09!23;UBERON:0002405!3.67e-09!115;UBERON:0007499!1.52e-08!25;UBERON:0009497!1.52e-08!25;UBERON:0000015!1.52e-08!25;UBERON:0002423!1.52e-08!25;UBERON:0006235!1.52e-08!25;UBERON:0004161!1.52e-08!25;UBERON:0009856!3.95e-08!26 | |ontology_enrichment_uberon=UBERON:0002107!5.77e-12!19;UBERON:0006925!5.77e-12!19;UBERON:0008836!5.77e-12!19;UBERON:0005057!1.60e-11!26;UBERON:0008835!5.12e-10!22;UBERON:0003894!5.12e-10!22;UBERON:0009854!1.75e-09!23;UBERON:0002405!3.67e-09!115;UBERON:0007499!1.52e-08!25;UBERON:0009497!1.52e-08!25;UBERON:0000015!1.52e-08!25;UBERON:0002423!1.52e-08!25;UBERON:0006235!1.52e-08!25;UBERON:0004161!1.52e-08!25;UBERON:0009856!3.95e-08!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.88e-21;19!UBERON:0006925;1.88e-21;19!UBERON:0002423;1.95e-16;25!UBERON:0002365;3.22e-13;31!UBERON:0002330;3.22e-13;31!UBERON:0002368;3.77e-11;33!UBERON:0000949;4.11e-08;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.88e-21,19;UBERON:0006925,1.88e-21,19;UBERON:0008836,1.88e-21,19;UBERON:0008835,1.33e-18,22;UBERON:0003894,1.33e-18,22;UBERON:0009854,8.09e-18,23;UBERON:0007499,1.95e-16,25;UBERON:0009497,1.95e-16,25;UBERON:0000015,1.95e-16,25;UBERON:0002423,1.95e-16,25;UBERON:0006235,1.95e-16,25;UBERON:0004161,1.95e-16,25;UBERON:0009856,8.00e-16,26;UBERON:0002365,2.38e-13,31;UBERON:0002330,2.38e-13,31;UBERON:0002368,7.06e-12,35;UBERON:0000949,2.48e-09,45;UBERON:0003929,7.73e-08,54;UBERON:0005172,7.73e-08,54;UBERON:0005173,7.73e-08,54;UBERON:0002530,3.33e-07,59;UBERON:0002417,4.34e-07,60;UBERON:0000916,4.34e-07,60 | |||
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| ||
|short_description=p7@ABCA1 | |short_description=p7@ABCA1 | ||
}} | }} |
Latest revision as of 23:08, 19 September 2015
Short description: | p7@ABCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_ABCA1_5end |
Coexpression cluster: | C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small |
Association with transcript: | -1bp_to_AB037924_5end |
EntrezGene: | ABCA1 |
HGNC: | 29 |
UniProt: | Q9NS76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.55e-09 | 12 |
cardiac mesenchymal cell | 2.04e-07 | 4 |
migratory trunk neural crest cell | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 1.88e-21 | 19 |
digestive gland | 1.88e-21 | 19 |
liver bud | 1.88e-21 | 19 |
hepatic diverticulum | 1.33e-18 | 22 |
liver primordium | 1.33e-18 | 22 |
digestive tract diverticulum | 8.09e-18 | 23 |
epithelial sac | 1.95e-16 | 25 |
epithelium of foregut-midgut junction | 1.95e-16 | 25 |
anatomical boundary | 1.95e-16 | 25 |
hepatobiliary system | 1.95e-16 | 25 |
foregut-midgut junction | 1.95e-16 | 25 |
septum transversum | 1.95e-16 | 25 |
sac | 8.00e-16 | 26 |
exocrine gland | 2.38e-13 | 31 |
exocrine system | 2.38e-13 | 31 |
endocrine gland | 7.06e-12 | 35 |
endocrine system | 2.48e-09 | 45 |
gut epithelium | 7.73e-08 | 54 |
abdomen element | 7.73e-08 | 54 |
abdominal segment element | 7.73e-08 | 54 |
gland | 3.33e-07 | 59 |
abdominal segment of trunk | 4.34e-07 | 60 |
abdomen | 4.34e-07 | 60 |