FFCP PHASE1:Hg19::chr16:55689872..55689912,+: Difference between revisions
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|id=chr16:55689872..55689912,+
|short_description=p1@SLC6A2
|description=CAGE_peak_1_at_SLC6A2_5end
|association_with_transcript=-109bp_to_uc002eif.2,uc010ccd.2_5en...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6530 | |EntrezGene=6530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11048 | |HGNC=11048 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-109bp_to_uc002eif.2,uc010ccd.2_5end | |||
|cluster_id=chr16:55689872..55689912,+ | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_1_at_SLC6A2_5end | |||
|id=chr16:55689872..55689912,+ | |||
|ontology_enrichment_celltype=CL:0002541!1.37e-13!3 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.21e-46;3!CL:0000349;3.06e-13;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.21e-46,3;CL:0000349,3.16e-13,19 | |||
|ontology_enrichment_development_v019=UBERON:0003124;6.47e-17;1!UBERON:0004872;9.94e-10;7!UBERON:0006965;6.93e-09;2!UBERON:0007297;6.93e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!1.37e-13!3;UBERON:0000920!1.37e-13!3;UBERON:0000988!3.22e-13!3;UBERON:0001723!4.93e-12!3;UBERON:0001033!4.93e-12!3;UBERON:0010056!4.93e-12!3;UBERON:0005631!2.40e-10!14;UBERON:0000158!2.40e-10!14;UBERON:0003124!4.77e-10!7;UBERON:0002148!2.05e-09!2;UBERON:0009662!2.05e-09!2;UBERON:0001042!3.98e-09!10;UBERON:0009145!3.98e-09!10;UBERON:0002298!2.52e-08!8;UBERON:0006562!2.85e-08!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.21e-46;3!UBERON:0000920;1.21e-46;3!UBERON:0005631;8.18e-25;10!UBERON:0000158;8.18e-25;10!UBERON:0001301;1.93e-16;1!UBERON:0000478;4.68e-16;24!UBERON:0002148;3.71e-09;2!UBERON:0006331;3.71e-09;2!UBERON:0009662;3.71e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.21e-46,3;UBERON:0003124,1.65e-35,7;UBERON:0005631,2.07e-27,14;UBERON:0000158,2.07e-27,14;UBERON:0001301,1.93e-16,1;UBERON:0000478,4.83e-16,24;UBERON:0002148,3.71e-09,2;UBERON:0006331,3.71e-09,2;UBERON:0009662,3.71e-09,2 | |||
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| ||
|short_description=p1@SLC6A2 | |||
}} | }} |
Latest revision as of 00:32, 17 September 2015
Short description: | p1@SLC6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC6A2_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | -109bp_to_uc002eif.2, uc010ccd.2_5end |
EntrezGene: | SLC6A2 |
HGNC: | 11048 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.21e-46 | 3 |
extraembryonic cell | 3.16e-13 | 19 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.21e-46 | 3 |
chorion | 1.65e-35 | 7 |
extraembryonic membrane | 2.07e-27 | 14 |
membranous layer | 2.07e-27 | 14 |
epididymis | 1.93e-16 | 1 |
extraembryonic structure | 4.83e-16 | 24 |
locus ceruleus | 3.71e-09 | 2 |
brainstem nucleus | 3.71e-09 | 2 |
hindbrain nucleus | 3.71e-09 | 2 |