FFCP PHASE1:Hg19::chr16:56704965..56704969,+: Difference between revisions
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|id=chr16:56704965..56704969,+
|short_description=p@chr16:56704965..56704969,+
|description=CAGE_peak_at_chr16:56704965..56704969,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:56704965..56704969,+ | |||
|coexpression_cluster_id=C3576 | |||
|description=CAGE_peak_at_chr16:56704965..56704969,+ | |||
|id=chr16:56704965..56704969,+ | |||
|ontology_enrichment_celltype=CL:0000039!4.75e-16!7;CL:0000586!4.75e-16!7;CL:0000181!1.67e-09!12;CL:0000417!1.67e-09!12;CL:0000668!1.67e-09!12;CL:0000414!1.67e-09!12;CL:0000412!1.67e-09!12;CL:0000182!1.67e-09!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.28e-26;12!CL:0000039;2.37e-12;7!CL:0000586;2.37e-12;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.15e-26,12;CL:0000039,2.24e-12,7;CL:0000586,2.24e-12,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.28e-09;10!UBERON:0005564;6.28e-09;10!UBERON:0004161;3.37e-08;11!UBERON:0009497;4.52e-07;13 | |||
|ontology_enrichment_disease=DOID:630!5.40e-08!1;DOID:0050177!5.40e-08!1;DOID:0050427!5.40e-08!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000473!4.59e-14!8;UBERON:0002107!1.04e-12!19;UBERON:0006925!1.04e-12!19;UBERON:0008836!1.04e-12!19;UBERON:0008835!6.72e-11!22;UBERON:0003894!6.72e-11!22;UBERON:0009854!2.12e-10!23;UBERON:0003135!2.89e-10!11;UBERON:0007499!1.60e-09!25;UBERON:0009497!1.60e-09!25;UBERON:0000015!1.60e-09!25;UBERON:0002423!1.60e-09!25;UBERON:0006235!1.60e-09!25;UBERON:0004161!1.60e-09!25;UBERON:0005057!3.90e-09!26;UBERON:0009856!3.90e-09!26;UBERON:0002368!7.36e-09!35;UBERON:0002365!1.44e-07!31;UBERON:0002330!1.44e-07!31;UBERON:0003929!5.22e-07!54;UBERON:0005172!8.96e-07!55;UBERON:0005173!8.96e-07!55 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.93e-26;19!UBERON:0006925;3.93e-26;19!UBERON:0002423;6.32e-20;25!UBERON:0002365;4.54e-16;31!UBERON:0002330;4.54e-16;31!UBERON:0002368;1.23e-15;33!UBERON:0000922;8.46e-13;49!UBERON:0000473;6.28e-11;8!UBERON:0000949;3.84e-10;43!UBERON:0003135;3.37e-08;11!UBERON:0002114;7.02e-08;2!UBERON:0002417;9.77e-08;58!UBERON:0000916;9.77e-08;58!UBERON:0005172;2.16e-07;52!UBERON:0005173;2.16e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.54e-26,19;UBERON:0006925,3.54e-26,19;UBERON:0008836,3.54e-26,19;UBERON:0008835,1.20e-22,22;UBERON:0003894,1.20e-22,22;UBERON:0009854,1.13e-21,23;UBERON:0007499,5.84e-20,25;UBERON:0009497,5.84e-20,25;UBERON:0000015,5.84e-20,25;UBERON:0002423,5.84e-20,25;UBERON:0006235,5.84e-20,25;UBERON:0004161,5.84e-20,25;UBERON:0009856,3.35e-19,26;UBERON:0002365,3.86e-16,31;UBERON:0002330,3.86e-16,31;UBERON:0002368,2.57e-14,35;UBERON:0000949,3.62e-11,45;UBERON:0000473,5.98e-11,8;UBERON:0003929,2.53e-09,54;UBERON:0005172,2.53e-09,54;UBERON:0005173,2.53e-09,54;UBERON:0002530,1.54e-08,59;UBERON:0002417,2.13e-08,60;UBERON:0000916,2.13e-08,60;UBERON:0003135,3.25e-08,11;UBERON:0004921,6.30e-08,118;UBERON:0002114,8.29e-08,2 | |||
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|short_description=p@chr16:56704965..56704969,+ | |||
}} | }} |
Latest revision as of 10:24, 25 July 2015
Short description: | p@chr16:56704965..56704969, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:56704965..56704969, + |
Coexpression cluster: | C3576_liver_colon_testicular_duodenum_Hepatocyte_Macrophage_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.15e-26 | 12 |
germ line cell | 2.24e-12 | 7 |
germ cell | 2.24e-12 | 7 |
Ontology term | p-value | n |
---|---|---|
liver | 3.54e-26 | 19 |
digestive gland | 3.54e-26 | 19 |
liver bud | 3.54e-26 | 19 |
hepatic diverticulum | 1.20e-22 | 22 |
liver primordium | 1.20e-22 | 22 |
digestive tract diverticulum | 1.13e-21 | 23 |
epithelial sac | 5.84e-20 | 25 |
epithelium of foregut-midgut junction | 5.84e-20 | 25 |
anatomical boundary | 5.84e-20 | 25 |
hepatobiliary system | 5.84e-20 | 25 |
foregut-midgut junction | 5.84e-20 | 25 |
septum transversum | 5.84e-20 | 25 |
sac | 3.35e-19 | 26 |
exocrine gland | 3.86e-16 | 31 |
exocrine system | 3.86e-16 | 31 |
endocrine gland | 2.57e-14 | 35 |
endocrine system | 3.62e-11 | 45 |
testis | 5.98e-11 | 8 |
gut epithelium | 2.53e-09 | 54 |
abdomen element | 2.53e-09 | 54 |
abdominal segment element | 2.53e-09 | 54 |
gland | 1.54e-08 | 59 |
abdominal segment of trunk | 2.13e-08 | 60 |
abdomen | 2.13e-08 | 60 |
male reproductive organ | 3.25e-08 | 11 |
subdivision of digestive tract | 6.30e-08 | 118 |
duodenum | 8.29e-08 | 2 |