FFCP PHASE1:Hg19::chr17:2278481..2278491,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9905 | |EntrezGene=9905 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29026 | |HGNC=29026 | ||
|TSSclassifier=strong | |||
|UniProt=O43147 | |UniProt=O43147 | ||
|association_with_transcript=-294bp_to_uc002fup.1_5end | |association_with_transcript=-294bp_to_uc002fup.1_5end | ||
|cluster_id=chr17:2278481..2278491,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_14_at_SGSM2_5end | |description=CAGE_peak_14_at_SGSM2_5end | ||
|id=chr17:2278481..2278491,+ | |id=chr17:2278481..2278491,+ | ||
|ontology_enrichment_celltype=CL:0000349!2.30e-22!3;CL:0002577!2.30e-22!3;CL:0002536!4.47e-15!2;CL:0002541!1.34e-10!3;CL:0002537!8.58e-07!5 | |ontology_enrichment_celltype=CL:0000349!2.30e-22!3;CL:0002577!2.30e-22!3;CL:0002536!4.47e-15!2;CL:0002541!1.34e-10!3;CL:0002537!8.58e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.10e-73;19!CL:0002577;7.35e-66;3!CL:0002541;2.87e-30;3!CL:0002537;7.57e-19;5!CL:0002536;2.90e-12;2!CL:0002567;1.30e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.11e-73,19;CL:0002577,3.76e-66,3;CL:0002541,4.17e-30,3;CL:0002537,7.24e-19,5;CL:0002536,3.24e-12,2;CL:0002567,1.30e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.57e-49!14;UBERON:0000158!2.57e-49!14;UBERON:0003124!2.94e-36!7;UBERON:0001987!1.02e-28!4;UBERON:0004340!1.02e-28!4;UBERON:0000478!4.42e-28!24;UBERON:0000305!1.14e-16!7;UBERON:0003296!2.93e-16!4;UBERON:0010133!2.93e-16!4;UBERON:0000007!7.84e-15!2;UBERON:0004871!1.31e-14!8;UBERON:0004923!3.88e-13!57;UBERON:0000476!1.34e-10!3;UBERON:0000920!1.34e-10!3;UBERON:0004175!1.23e-09!25;UBERON:0001894!1.62e-09!7;UBERON:0006222!1.62e-09!7;UBERON:0000996!2.33e-08!1;UBERON:0001831!2.69e-08!1;UBERON:0001567!2.69e-08!1;UBERON:0008801!2.69e-08!1;UBERON:0002135!3.10e-08!1;UBERON:0001301!4.41e-08!1;UBERON:0003975!6.82e-08!22 | |ontology_enrichment_uberon=UBERON:0005631!2.57e-49!14;UBERON:0000158!2.57e-49!14;UBERON:0003124!2.94e-36!7;UBERON:0001987!1.02e-28!4;UBERON:0004340!1.02e-28!4;UBERON:0000478!4.42e-28!24;UBERON:0000305!1.14e-16!7;UBERON:0003296!2.93e-16!4;UBERON:0010133!2.93e-16!4;UBERON:0000007!7.84e-15!2;UBERON:0004871!1.31e-14!8;UBERON:0004923!3.88e-13!57;UBERON:0000476!1.34e-10!3;UBERON:0000920!1.34e-10!3;UBERON:0004175!1.23e-09!25;UBERON:0001894!1.62e-09!7;UBERON:0006222!1.62e-09!7;UBERON:0000996!2.33e-08!1;UBERON:0001831!2.69e-08!1;UBERON:0001567!2.69e-08!1;UBERON:0008801!2.69e-08!1;UBERON:0002135!3.10e-08!1;UBERON:0001301!4.41e-08!1;UBERON:0003975!6.82e-08!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.77e-58;24!UBERON:0005631;4.55e-55;10!UBERON:0000158;4.55e-55;10!UBERON:0001987;1.19e-49;4!UBERON:0003124;2.87e-30;3!UBERON:0000920;2.87e-30;3!UBERON:0000305;4.44e-29;7!UBERON:0000077;5.64e-08;27!UBERON:0004923;1.66e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.57e-99,14;UBERON:0000158,1.57e-99,14;UBERON:0003124,6.06e-78,7;UBERON:0000478,3.77e-58,24;UBERON:0001987,7.22e-50,4;UBERON:0004340,7.22e-50,4;UBERON:0000920,4.17e-30,3;UBERON:0000305,4.66e-29,7;UBERON:0004871,1.56e-25,8;UBERON:0004923,3.67e-21,66;UBERON:0000995,4.04e-10,21;UBERON:0005795,1.09e-09,22;UBERON:0003975,1.09e-09,22;UBERON:0004175,1.34e-08,25;UBERON:0000077,1.71e-07,29 | |||
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|short_description=p14@SGSM2 | |short_description=p14@SGSM2 | ||
}} | }} |
Latest revision as of 03:03, 19 September 2015
Short description: | p14@SGSM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_SGSM2_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -294bp_to_uc002fup.1_5end |
EntrezGene: | SGSM2 |
HGNC: | 29026 |
UniProt: | O43147 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.11e-73 | 19 |
placental epithelial cell | 3.76e-66 | 3 |
chorionic membrane mesenchymal stem cell | 4.17e-30 | 3 |
amnion mesenchymal stem cell | 7.24e-19 | 5 |
amniotic epithelial cell | 3.24e-12 | 2 |
light melanocyte | 1.30e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.57e-99 | 14 |
membranous layer | 1.57e-99 | 14 |
chorion | 6.06e-78 | 7 |
extraembryonic structure | 3.77e-58 | 24 |
placenta | 7.22e-50 | 4 |
allantois | 7.22e-50 | 4 |
egg chorion | 4.17e-30 | 3 |
amnion | 4.66e-29 | 7 |
somatic layer of lateral plate mesoderm | 1.56e-25 | 8 |
organ component layer | 3.67e-21 | 66 |
uterus | 4.04e-10 | 21 |
embryonic uterus | 1.09e-09 | 22 |
internal female genitalia | 1.09e-09 | 22 |
internal genitalia | 1.34e-08 | 25 |
mixed endoderm/mesoderm-derived structure | 1.71e-07 | 29 |