FFCP PHASE1:Hg19::chr12:66218003..66218018,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt=P52926 | |UniProt=P52926 | ||
|association_with_transcript=92bp_to_ENST00000403681_5end | |association_with_transcript=92bp_to_ENST00000403681_5end | ||
|cluster_id=chr12:66218003..66218018,+ | |||
|description=CAGE_peak_9_at_HMGA2_5end | |description=CAGE_peak_9_at_HMGA2_5end | ||
|id=chr12:66218003..66218018,+ | |id=chr12:66218003..66218018,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.69e-25!254;CL:0002321!3.37e-18!248;CL:0000220!1.83e-17!246;CL:0000548!8.77e-16!679;CL:0000004!8.77e-16!679;CL:0000255!8.77e-16!679;CL:0000012!1.80e-15!682;CL:0000223!8.55e-14!59;CL:0002076!1.60e-12!43;CL:0002371!1.41e-10!591;CL:0000144!1.29e-09!625;CL:0000055!3.58e-08!180;CL:0000003!4.98e-08!722;CL:1000449!6.20e-08!16;CL:1000497!1.32e-07!18;CL:0002518!1.32e-07!18;CL:1000507!3.38e-07!12;CL:1000494!3.38e-07!12;CL:0000063!4.07e-07!578 | |ontology_enrichment_celltype=CL:0000066!3.69e-25!254;CL:0002321!3.37e-18!248;CL:0000220!1.83e-17!246;CL:0000548!8.77e-16!679;CL:0000004!8.77e-16!679;CL:0000255!8.77e-16!679;CL:0000012!1.80e-15!682;CL:0000223!8.55e-14!59;CL:0002076!1.60e-12!43;CL:0002371!1.41e-10!591;CL:0000144!1.29e-09!625;CL:0000055!3.58e-08!180;CL:0000003!4.98e-08!722;CL:1000449!6.20e-08!16;CL:1000497!1.32e-07!18;CL:0002518!1.32e-07!18;CL:1000507!3.38e-07!12;CL:1000494!3.38e-07!12;CL:0000063!4.07e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0002076;5.67e-11;42!CL:1000449;3.27e-09;15!CL:1000497;4.51e-09;17!CL:0002518;4.51e-09;17!CL:1000507;1.47e-08;10!CL:1000494;1.47e-08;10!CL:0002681;9.87e-07;12!CL:0002584;9.87e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.62e-27,253;CL:0000223,2.61e-15,58;CL:0002076,9.98e-14,42;CL:0002321,9.15e-13,250;CL:1000449,5.35e-09,15;CL:1000497,6.90e-09,17;CL:0002518,6.90e-09,17;CL:1000507,1.87e-08,10;CL:1000494,1.87e-08,10 | |||
|ontology_enrichment_development_v019=CL:0000223;5.69e-08;58 | |||
|ontology_enrichment_disease=DOID:0050687!7.00e-09!143;DOID:305!6.78e-07!106 | |ontology_enrichment_disease=DOID:0050687!7.00e-09!143;DOID:305!6.78e-07!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.76e-09,143;DOID:305,2.75e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0003104!8.27e-09!238;UBERON:0009142!8.27e-09!238;UBERON:0005256!1.73e-08!143;UBERON:0001444!2.13e-08!48;UBERON:0000466!3.59e-08!126;UBERON:0002100!5.10e-08!216;UBERON:0000468!5.18e-08!659;UBERON:0004211!6.20e-08!16;UBERON:0001285!6.20e-08!16;UBERON:0007684!6.20e-08!16;UBERON:0003220!6.20e-08!16;UBERON:0004208!6.20e-08!16;UBERON:0000481!7.15e-08!347;UBERON:0004119!2.93e-07!169;UBERON:0000925!2.93e-07!169;UBERON:0006595!2.93e-07!169;UBERON:0009773!3.38e-07!12;UBERON:0001231!3.38e-07!12;UBERON:0004810!3.38e-07!12;UBERON:0000922!3.60e-07!612;UBERON:0000467!4.71e-07!625;UBERON:0006555!4.92e-07!17;UBERON:0005103!4.92e-07!17;UBERON:0000083!4.92e-07!17;UBERON:0009201!4.92e-07!17;UBERON:0004819!4.92e-07!17;UBERON:0006553!4.92e-07!17;UBERON:0003074!4.92e-07!17;UBERON:0003060!4.92e-07!17;UBERON:0000464!5.18e-07!104;UBERON:0000480!6.58e-07!626;UBERON:0003914!7.21e-07!118;UBERON:0000353!8.89e-07!17 | |ontology_enrichment_uberon=UBERON:0003104!8.27e-09!238;UBERON:0009142!8.27e-09!238;UBERON:0005256!1.73e-08!143;UBERON:0001444!2.13e-08!48;UBERON:0000466!3.59e-08!126;UBERON:0002100!5.10e-08!216;UBERON:0000468!5.18e-08!659;UBERON:0004211!6.20e-08!16;UBERON:0001285!6.20e-08!16;UBERON:0007684!6.20e-08!16;UBERON:0003220!6.20e-08!16;UBERON:0004208!6.20e-08!16;UBERON:0000481!7.15e-08!347;UBERON:0004119!2.93e-07!169;UBERON:0000925!2.93e-07!169;UBERON:0006595!2.93e-07!169;UBERON:0009773!3.38e-07!12;UBERON:0001231!3.38e-07!12;UBERON:0004810!3.38e-07!12;UBERON:0000922!3.60e-07!612;UBERON:0000467!4.71e-07!625;UBERON:0006555!4.92e-07!17;UBERON:0005103!4.92e-07!17;UBERON:0000083!4.92e-07!17;UBERON:0009201!4.92e-07!17;UBERON:0004819!4.92e-07!17;UBERON:0006553!4.92e-07!17;UBERON:0003074!4.92e-07!17;UBERON:0003060!4.92e-07!17;UBERON:0000464!5.18e-07!104;UBERON:0000480!6.58e-07!626;UBERON:0003914!7.21e-07!118;UBERON:0000353!8.89e-07!17 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.48e-10;30!UBERON:0001008;1.48e-10;30!UBERON:0006555;3.27e-09;15!UBERON:0004819;3.27e-09;15!UBERON:0001285;3.27e-09;15!UBERON:0007684;3.27e-09;15!UBERON:0004211;1.47e-08;10!UBERON:0009773;1.47e-08;10!UBERON:0001231;1.47e-08;10!UBERON:0004810;1.47e-08;10!UBERON:0002113;6.43e-08;24!UBERON:0011143;6.43e-08;24!UBERON:0000019;5.67e-07;19!UBERON:0000047;5.67e-07;19!UBERON:0004088;5.67e-07;19!UBERON:0010230;5.67e-07;19!UBERON:0000353;9.26e-07;15!UBERON:0001225;9.87e-07;12!UBERON:0008987;9.87e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,1.09e-09,101;UBERON:0004211,5.35e-09,15;UBERON:0009773,5.35e-09,15;UBERON:0001231,5.35e-09,15;UBERON:0001285,5.35e-09,15;UBERON:0007684,5.35e-09,15;UBERON:0004208,5.35e-09,15;UBERON:0004810,1.87e-08,10;UBERON:0006555,3.85e-08,16;UBERON:0004819,3.85e-08,16;UBERON:0001444,1.90e-07,49;UBERON:0000033,3.32e-07,56;UBERON:0006554,9.01e-07,47 | |||
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| ||
|short_description=p9@HMGA2 | |short_description=p9@HMGA2 | ||
}} | }} |
Latest revision as of 23:13, 19 September 2015
Short description: | p9@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_HMGA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 92bp_to_ENST00000403681_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | P52926 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.62e-27 | 253 |
endodermal cell | 2.61e-15 | 58 |
endo-epithelial cell | 9.98e-14 | 42 |
embryonic cell | 9.15e-13 | 250 |
epithelial cell of nephron | 5.35e-09 | 15 |
kidney cell | 6.90e-09 | 17 |
kidney epithelial cell | 6.90e-09 | 17 |
kidney tubule cell | 1.87e-08 | 10 |
nephron tubule epithelial cell | 1.87e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 1.09e-09 | 101 |
nephron epithelium | 5.35e-09 | 15 |
renal tubule | 5.35e-09 | 15 |
nephron tubule | 5.35e-09 | 15 |
nephron | 5.35e-09 | 15 |
uriniferous tubule | 5.35e-09 | 15 |
nephrogenic mesenchyme | 5.35e-09 | 15 |
nephron tubule epithelium | 1.87e-08 | 10 |
excretory tube | 3.85e-08 | 16 |
kidney epithelium | 3.85e-08 | 16 |
subdivision of head | 1.90e-07 | 49 |
head | 3.32e-07 | 56 |
urinary system structure | 9.01e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.76e-09 | 143 |
carcinoma | 2.75e-07 | 106 |