FFCP PHASE1:Hg19::chr12:6960407..6960464,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83461 | |EntrezGene=83461 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14624 | |HGNC=14624 | ||
|TSSclassifier=strong | |||
|UniProt=Q99618,F8WDL1,F5GX58,B2R749 | |UniProt=Q99618,F8WDL1,F5GX58,B2R749 | ||
|association_with_transcript=0bp_to_ENST00000229265,ENST00000422785,ENST00000446553,ENST00000535406,ENST00000536241,ENST00000540683,ENST00000545368,NM_031299,uc001qre.2,uc001qrg.2_5end | |association_with_transcript=0bp_to_ENST00000229265,ENST00000422785,ENST00000446553,ENST00000535406,ENST00000536241,ENST00000540683,ENST00000545368,NM_031299,uc001qre.2,uc001qrg.2_5end | ||
|cluster_id=chr12:6960407..6960464,- | |||
|coexpression_cluster_id=C747 | |coexpression_cluster_id=C747 | ||
|description=CAGE_peak_1_at_CDCA3_5end | |description=CAGE_peak_1_at_CDCA3_5end | ||
|id=chr12:6960407..6960464,- | |id=chr12:6960407..6960464,- | ||
|ontology_enrichment_celltype=CL:0000548!2.99e-20!679;CL:0000004!2.99e-20!679;CL:0000255!2.99e-20!679;CL:0000012!6.58e-20!682;CL:0000066!3.40e-19!254;CL:0002321!6.17e-12!248;CL:0000055!1.10e-11!180;CL:0000220!1.60e-11!246;CL:0000003!3.44e-11!722;CL:0000144!6.38e-09!625;CL:0000063!1.62e-08!578;CL:0000333!1.61e-07!41;CL:0000057!6.68e-07!75 | |ontology_enrichment_celltype=CL:0000548!2.99e-20!679;CL:0000004!2.99e-20!679;CL:0000255!2.99e-20!679;CL:0000012!6.58e-20!682;CL:0000066!3.40e-19!254;CL:0002321!6.17e-12!248;CL:0000055!1.10e-11!180;CL:0000220!1.60e-11!246;CL:0000003!3.44e-11!722;CL:0000144!6.38e-09!625;CL:0000063!1.62e-08!578;CL:0000333!1.61e-07!41;CL:0000057!6.68e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:1000497;8.75e-08;17!CL:0002518;8.75e-08;17!CL:1000449;1.49e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.57e-19,253;CL:0002321,5.68e-12,250;CL:1000497,8.96e-08,17;CL:0002518,8.96e-08,17;CL:0000333,1.19e-07,41;CL:1000449,1.50e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.80e-32!235;DOID:14566!1.41e-30!239;DOID:0050687!1.97e-16!143;DOID:0050686!3.91e-14!137;DOID:305!3.93e-13!106;DOID:2531!4.49e-12!51;DOID:0060083!4.49e-12!51;DOID:1240!3.52e-08!39 | |ontology_enrichment_disease=DOID:162!3.80e-32!235;DOID:14566!1.41e-30!239;DOID:0050687!1.97e-16!143;DOID:0050686!3.91e-14!137;DOID:305!3.93e-13!106;DOID:2531!4.49e-12!51;DOID:0060083!4.49e-12!51;DOID:1240!3.52e-08!39 | ||
|ontology_enrichment_disease_v019=DOID:2531;8.77e-08;51!DOID:0060083;8.77e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.43e-32,235;DOID:14566,2.39e-30,239;DOID:0050687,2.06e-16,143;DOID:0050686,4.62e-14,137;DOID:305,3.29e-13,106;DOID:2531,3.32e-12,51;DOID:0060083,3.32e-12,51;DOID:1240,2.91e-08,39 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.49e-07;15!UBERON:0004819;1.49e-07;15!UBERON:0001285;1.49e-07;15!UBERON:0007684;1.49e-07;15!UBERON:0002113;4.08e-07;24!UBERON:0011143;4.08e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.50e-07,15;UBERON:0009773,1.50e-07,15;UBERON:0001231,1.50e-07,15;UBERON:0001285,1.50e-07,15;UBERON:0007684,1.50e-07,15;UBERON:0004208,1.50e-07,15;UBERON:0006555,9.27e-07,16;UBERON:0004819,9.27e-07,16 | |||
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| ||
|short_description=p1@CDCA3 | |short_description=p1@CDCA3 | ||
}} | }} |
Latest revision as of 05:02, 20 September 2015
Short description: | p1@CDCA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDCA3_5end |
Coexpression cluster: | C747_Mesenchymal_alveolar_Trabecular_Alveolar_carcinoid_Renal_chronic |
Association with transcript: | 0bp_to_ENST00000229265, ENST00000422785, ENST00000446553, ENST00000535406, ENST00000536241, ENST00000540683, ENST00000545368, NM_031299, uc001qre.2, uc001qrg.2_5end |
EntrezGene: | CDCA3 |
HGNC: | 14624 |
UniProt: | Q99618F8WDL1F5GX58B2R749 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.57e-19 | 253 |
embryonic cell | 5.68e-12 | 250 |
kidney cell | 8.96e-08 | 17 |
kidney epithelial cell | 8.96e-08 | 17 |
migratory neural crest cell | 1.19e-07 | 41 |
epithelial cell of nephron | 1.50e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.50e-07 | 15 |
renal tubule | 1.50e-07 | 15 |
nephron tubule | 1.50e-07 | 15 |
nephron | 1.50e-07 | 15 |
uriniferous tubule | 1.50e-07 | 15 |
nephrogenic mesenchyme | 1.50e-07 | 15 |
excretory tube | 9.27e-07 | 16 |
kidney epithelium | 9.27e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.43e-32 | 235 |
disease of cellular proliferation | 2.39e-30 | 239 |
cell type cancer | 2.06e-16 | 143 |
organ system cancer | 4.62e-14 | 137 |
carcinoma | 3.29e-13 | 106 |
hematologic cancer | 3.32e-12 | 51 |
immune system cancer | 3.32e-12 | 51 |
leukemia | 2.91e-08 | 39 |