FFCP PHASE1:Hg19::chr3:10068095..10068170,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2177 | |EntrezGene=2177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3585 | |HGNC=3585 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BXW9,F8WE37 | |UniProt=Q9BXW9,F8WE37 | ||
|association_with_transcript=0bp_to_ENST00000287647,ENST00000383806,ENST00000383807,ENST00000435522,NM_001018115,NM_033084,uc003buv.2,uc003buw.2,uc003bux.1_5end | |association_with_transcript=0bp_to_ENST00000287647,ENST00000383806,ENST00000383807,ENST00000435522,NM_001018115,NM_033084,uc003buv.2,uc003buw.2,uc003bux.1_5end | ||
|cluster_id=chr3:10068095..10068170,+ | |||
|coexpression_cluster_id=C4256 | |coexpression_cluster_id=C4256 | ||
|description=CAGE_peak_1_at_FANCD2_5end | |description=CAGE_peak_1_at_FANCD2_5end | ||
|id=chr3:10068095..10068170,+ | |id=chr3:10068095..10068170,+ | ||
|ontology_enrichment_celltype=CL:0000012!1.67e-12!682;CL:0000548!1.85e-12!679;CL:0000004!1.85e-12!679;CL:0000255!1.85e-12!679;CL:0000003!3.27e-10!722;CL:0000066!1.14e-09!254;CL:0000945!8.85e-09!24;CL:0000826!8.85e-09!24;CL:0000063!4.10e-08!578;CL:0000542!6.63e-08!53;CL:0000051!6.63e-08!53;CL:0000838!1.80e-07!52;CL:0002319!3.61e-07!25 | |ontology_enrichment_celltype=CL:0000012!1.67e-12!682;CL:0000548!1.85e-12!679;CL:0000004!1.85e-12!679;CL:0000255!1.85e-12!679;CL:0000003!3.27e-10!722;CL:0000066!1.14e-09!254;CL:0000945!8.85e-09!24;CL:0000826!8.85e-09!24;CL:0000063!4.10e-08!578;CL:0000542!6.63e-08!53;CL:0000051!6.63e-08!53;CL:0000838!1.80e-07!52;CL:0002319!3.61e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000945;7.39e-09;24!CL:0002319;2.75e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.80e-09,253;CL:0000945,6.06e-09,24;CL:0000826,6.06e-09,24;CL:0000542,1.10e-07,53;CL:0000051,1.10e-07,53;CL:0002319,2.69e-07,25;CL:0000838,2.98e-07,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.18e-48!235;DOID:14566!8.34e-47!239;DOID:0050687!8.47e-26!143;DOID:0050686!1.91e-21!137;DOID:305!3.80e-21!106;DOID:2531!5.98e-20!51;DOID:0060083!5.98e-20!51;DOID:1240!9.98e-16!39;DOID:8692!9.20e-12!31 | |ontology_enrichment_disease=DOID:162!4.18e-48!235;DOID:14566!8.34e-47!239;DOID:0050687!8.47e-26!143;DOID:0050686!1.91e-21!137;DOID:305!3.80e-21!106;DOID:2531!5.98e-20!51;DOID:0060083!5.98e-20!51;DOID:1240!9.98e-16!39;DOID:8692!9.20e-12!31 | ||
|ontology_enrichment_disease_v019=DOID:1240;7.05e-13;39!DOID:2531;1.47e-12;51!DOID:0060083;1.47e-12;51!DOID:8692;7.63e-12;31!DOID:305;2.71e-07;106!DOID:0050687;3.45e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.88e-48,235;DOID:14566,4.12e-47,239;DOID:0050687,1.40e-25,143;DOID:0050686,1.94e-21,137;DOID:305,7.09e-21,106;DOID:2531,1.46e-20,51;DOID:0060083,1.46e-20,51;DOID:1240,3.05e-16,39;DOID:8692,3.53e-12,31 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@FANCD2 | |short_description=p1@FANCD2 | ||
}} | }} |
Latest revision as of 06:22, 19 September 2015
Short description: | p1@FANCD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FANCD2_5end |
Coexpression cluster: | C4256_transitionalcell_embryonic_acute_retinoblastoma_iPS_Hodgkin_chronic |
Association with transcript: | 0bp_to_ENST00000287647, ENST00000383806, ENST00000383807, ENST00000435522, NM_001018115, NM_033084, uc003buv.2, uc003buw.2, uc003bux.1_5end |
EntrezGene: | FANCD2 |
HGNC: | 3585 |
UniProt: | Q9BXW9F8WE37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.80e-09 | 253 |
lymphocyte of B lineage | 6.06e-09 | 24 |
pro-B cell | 6.06e-09 | 24 |
lymphocyte | 1.10e-07 | 53 |
common lymphoid progenitor | 1.10e-07 | 53 |
neural cell | 2.69e-07 | 25 |
lymphoid lineage restricted progenitor cell | 2.98e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.88e-48 | 235 |
disease of cellular proliferation | 4.12e-47 | 239 |
cell type cancer | 1.40e-25 | 143 |
organ system cancer | 1.94e-21 | 137 |
carcinoma | 7.09e-21 | 106 |
hematologic cancer | 1.46e-20 | 51 |
immune system cancer | 1.46e-20 | 51 |
leukemia | 3.05e-16 | 39 |
myeloid leukemia | 3.53e-12 | 31 |