FFCP PHASE1:Hg19::chr5:132439186..132439209,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3308 | |EntrezGene=3308 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5237 | |HGNC=5237 | ||
|TSSclassifier=strong | |||
|UniProt=B4DN48 | |UniProt=B4DN48 | ||
|association_with_transcript=-378bp_to_AK297762_5end | |association_with_transcript=-378bp_to_AK297762_5end | ||
|cluster_id=chr5:132439186..132439209,+ | |||
|coexpression_cluster_id=C47 | |coexpression_cluster_id=C47 | ||
|description=CAGE_peak_13_at_HSPA4_5end | |description=CAGE_peak_13_at_HSPA4_5end | ||
|id=chr5:132439186..132439209,+ | |id=chr5:132439186..132439209,+ | ||
|ontology_enrichment_celltype=CL:0000945!2.08e-77!24;CL:0000826!2.08e-77!24;CL:0000236!4.31e-52!14;CL:0000542!2.26e-35!53;CL:0000051!2.26e-35!53;CL:0000838!7.40e-33!52;CL:0002087!2.24e-15!119;CL:0000738!3.12e-12!140;CL:0002031!7.07e-12!124;CL:0000785!4.08e-10!2;CL:0000955!4.08e-10!2;CL:0000818!4.08e-10!2;CL:0000954!4.08e-10!2;CL:0000816!4.08e-10!2;CL:0000037!6.14e-09!172;CL:0000566!6.14e-09!172;CL:0002032!1.36e-08!165;CL:0000837!1.36e-08!165;CL:0000988!3.74e-08!182;CL:0000817!5.32e-07!3 | |ontology_enrichment_celltype=CL:0000945!2.08e-77!24;CL:0000826!2.08e-77!24;CL:0000236!4.31e-52!14;CL:0000542!2.26e-35!53;CL:0000051!2.26e-35!53;CL:0000838!7.40e-33!52;CL:0002087!2.24e-15!119;CL:0000738!3.12e-12!140;CL:0002031!7.07e-12!124;CL:0000785!4.08e-10!2;CL:0000955!4.08e-10!2;CL:0000818!4.08e-10!2;CL:0000954!4.08e-10!2;CL:0000816!4.08e-10!2;CL:0000037!6.14e-09!172;CL:0000566!6.14e-09!172;CL:0002032!1.36e-08!165;CL:0000837!1.36e-08!165;CL:0000988!3.74e-08!182;CL:0000817!5.32e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.97e-144;24!CL:0000236;6.10e-88;13!CL:0000542;2.89e-41;53!CL:0000946;1.12e-09;1!CL:0000786;1.12e-09;1!CL:0000785;1.99e-09;1!CL:0000819;1.99e-09;1!CL:0002087;4.08e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.67e-144,24;CL:0000826,6.67e-144,24;CL:0000236,6.20e-96,14;CL:0000838,1.11e-64,52;CL:0000542,2.13e-63,53;CL:0000051,2.13e-63,53;CL:0002087,4.10e-27,115;CL:0002031,7.55e-26,120;CL:0000738,2.03e-22,136;CL:0002032,2.08e-18,161;CL:0000837,2.08e-18,161;CL:0000037,1.69e-17,168;CL:0000785,2.25e-17,2;CL:0000955,2.25e-17,2;CL:0000818,2.25e-17,2;CL:0000954,2.25e-17,2;CL:0000816,2.25e-17,2;CL:0000988,1.98e-16,177;CL:0000817,6.73e-12,3;CL:0000946,1.12e-09,1;CL:0000786,1.12e-09,1;CL:0000980,1.12e-09,1;CL:0000819,1.99e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000051;2.89e-41;53!CL:0000954;2.25e-17;2 | |||
|ontology_enrichment_disease=DOID:0060058!1.11e-10!10 | |ontology_enrichment_disease=DOID:0060058!1.11e-10!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;5.12e-13;10!DOID:630;1.32e-09;1!DOID:0050177;1.32e-09;1!DOID:0050427;1.32e-09;1!DOID:0060073;1.99e-09;1!DOID:8675;1.99e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,5.37e-13,10;DOID:630,1.32e-09,1;DOID:0050177,1.32e-09,1;DOID:0050427,1.32e-09,1;DOID:0060073,1.99e-09,1;DOID:8675,1.99e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002106!1.43e-12!3;UBERON:0004854!1.43e-12!3;UBERON:0009034!1.43e-12!3;UBERON:0002095!1.43e-12!3;UBERON:0004782!1.43e-12!3;UBERON:0003281!1.43e-12!3;UBERON:0009664!1.43e-12!3;UBERON:0002296!1.43e-12!3;UBERON:0005602!1.43e-12!3;UBERON:0001179!1.43e-12!3;UBERON:0006293!1.43e-12!3;UBERON:0000178!1.31e-09!15;UBERON:0000179!1.31e-09!15;UBERON:0000463!1.31e-09!15;UBERON:0000945!2.88e-08!8;UBERON:0010039!2.88e-08!8;UBERON:0007023!2.20e-07!115 | |ontology_enrichment_uberon=UBERON:0002106!1.43e-12!3;UBERON:0004854!1.43e-12!3;UBERON:0009034!1.43e-12!3;UBERON:0002095!1.43e-12!3;UBERON:0004782!1.43e-12!3;UBERON:0003281!1.43e-12!3;UBERON:0009664!1.43e-12!3;UBERON:0002296!1.43e-12!3;UBERON:0005602!1.43e-12!3;UBERON:0001179!1.43e-12!3;UBERON:0006293!1.43e-12!3;UBERON:0000178!1.31e-09!15;UBERON:0000179!1.31e-09!15;UBERON:0000463!1.31e-09!15;UBERON:0000945!2.88e-08!8;UBERON:0010039!2.88e-08!8;UBERON:0007023!2.20e-07!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36218985290986,1.9704141467987,3.38456359648821,0,0,0,0,0,0,1.31694240986513,6.82412315939623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27988733383968,11.4689108365048,20.4587128388618,13.6553671221282,17.6174234295845,9.77079147922622,9.91567309177293,16.2189138271012,3.41527781465669,4.69789751496751,3.82273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70894156152249,0.952927101831156,1.64544909234478,0.648473311192717,0,1.58625035258854,0,0,0,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,1.47701766553283,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,5.83855325490131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,5.846044722283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2148026809126,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.0644578879735772,0.0999411559249289,0,0,0,0.730336388246517,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,2.21401172950129,10.2581917537035 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36218985290986,1.9704141467987,3.38456359648821,0,0,0,0,0,0,1.31694240986513,6.82412315939623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27988733383968,11.4689108365048,20.4587128388618,13.6553671221282,17.6174234295845,9.77079147922622,9.91567309177293,16.2189138271012,3.41527781465669,4.69789751496751,3.82273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70894156152249,0.952927101831156,1.64544909234478,0.648473311192717,0,1.58625035258854,0,0,0,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,1.47701766553283,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,5.83855325490131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,5.846044722283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2148026809126,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.0644578879735772,0.0999411559249289,0,0,0,0.730336388246517,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,2.21401172950129,10.2581917537035 | ||
|short_description=p13@HSPA4 | |short_description=p13@HSPA4 | ||
}} | }} |
Latest revision as of 06:53, 20 September 2015
Short description: | p13@HSPA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_HSPA4_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | -378bp_to_AK297762_5end |
EntrezGene: | HSPA4 |
HGNC: | 5237 |
UniProt: | B4DN48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.67e-144 | 24 |
pro-B cell | 6.67e-144 | 24 |
B cell | 6.20e-96 | 14 |
lymphoid lineage restricted progenitor cell | 1.11e-64 | 52 |
lymphocyte | 2.13e-63 | 53 |
common lymphoid progenitor | 2.13e-63 | 53 |
nongranular leukocyte | 4.10e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 7.55e-26 | 120 |
leukocyte | 2.03e-22 | 136 |
hematopoietic oligopotent progenitor cell | 2.08e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.08e-18 | 161 |
hematopoietic stem cell | 1.69e-17 | 168 |
mature B cell | 2.25e-17 | 2 |
pre-B-II cell | 2.25e-17 | 2 |
transitional stage B cell | 2.25e-17 | 2 |
small pre-B-II cell | 2.25e-17 | 2 |
immature B cell | 2.25e-17 | 2 |
hematopoietic cell | 1.98e-16 | 177 |
precursor B cell | 6.73e-12 | 3 |
antibody secreting cell | 1.12e-09 | 1 |
plasma cell | 1.12e-09 | 1 |
plasmablast | 1.12e-09 | 1 |
B-1 B cell | 1.99e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 5.37e-13 | 10 |
genetic disease | 1.32e-09 | 1 |
monogenic disease | 1.32e-09 | 1 |
xeroderma pigmentosum | 1.32e-09 | 1 |
lymphatic system cancer | 1.99e-09 | 1 |
lymphosarcoma | 1.99e-09 | 1 |