FFCP PHASE1:Hg19::chr5:180018513..180018530,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92304 | |EntrezGene=92304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18384 | |HGNC=18384 | ||
|TSSclassifier=strong | |||
|UniProt=Q96QR1 | |UniProt=Q96QR1 | ||
|association_with_transcript=9bp_to_ENST00000292641_5end | |association_with_transcript=9bp_to_ENST00000292641_5end | ||
|cluster_id=chr5:180018513..180018530,- | |||
|coexpression_cluster_id=C4490 | |coexpression_cluster_id=C4490 | ||
|description=CAGE_peak_2_at_SCGB3A1_5end | |description=CAGE_peak_2_at_SCGB3A1_5end | ||
|id=chr5:180018513..180018530,- | |id=chr5:180018513..180018530,- | ||
|ontology_enrichment_celltype=CL:0002393!4.04e-09!9;CL:0002397!4.04e-09!9;CL:0000875!1.44e-08!3;CL:0002396!1.44e-08!3 | |ontology_enrichment_celltype=CL:0002393!4.04e-09!9;CL:0002397!4.04e-09!9;CL:0000875!1.44e-08!3;CL:0002396!1.44e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000875;2.41e-25;3!CL:0002396;2.41e-25;3!CL:0002032;2.08e-09;1!CL:0000557;2.08e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000875,2.21e-25,3;CL:0002396,2.21e-25,3;CL:0002393,7.65e-09,9;CL:0002397,7.65e-09,9 | |||
|ontology_enrichment_development_v019=UBERON:0008801;3.74e-10;1!UBERON:0006298;4.66e-10;1!UBERON:0006242;7.50e-10;1!UBERON:0000358;1.06e-09;1!UBERON:0004874;1.25e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.75e-21!115;UBERON:0006562!6.18e-07!11 | |ontology_enrichment_uberon=UBERON:0007023!5.75e-21!115;UBERON:0006562!6.18e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.81e-18;2!UBERON:0003127;2.24e-18;2!UBERON:0000341;5.28e-18;2!UBERON:0001044;1.13e-13;6!UBERON:0003293;1.13e-13;6!UBERON:0003294;1.13e-13;6!UBERON:0010047;1.13e-13;6!UBERON:0003408;1.13e-13;6!UBERON:0000167;1.13e-13;6!UBERON:0001831;3.74e-10;1!UBERON:0001567;3.74e-10;1!UBERON:0001736;4.66e-10;1!UBERON:0002171;7.50e-10;1!UBERON:0006518;7.50e-10;1!UBERON:0008949;7.50e-10;1!UBERON:0000101;7.50e-10;1!UBERON:0002167;7.50e-10;1!UBERON:0000989;1.25e-09;1!UBERON:0008811;1.25e-09;1!UBERON:0002372;2.08e-09;1!UBERON:0007029;2.08e-09;1!UBERON:0001961;2.08e-09;1!UBERON:0001744;2.08e-09;1!UBERON:0001042;2.08e-09;1!UBERON:0001735;2.08e-09;1!UBERON:0000165;2.13e-07;28!UBERON:0000161;2.18e-07;19!UBERON:0000166;2.18e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.73e-18,2;UBERON:0003127,2.24e-18,2;UBERON:0000341,5.28e-18,2;UBERON:0001044,1.13e-13,6;UBERON:0003293,1.13e-13,6;UBERON:0003294,1.13e-13,6;UBERON:0010047,1.13e-13,6;UBERON:0000167,1.13e-13,6;UBERON:0001831,3.74e-10,1;UBERON:0001567,3.74e-10,1;UBERON:0008801,3.74e-10,1;UBERON:0001736,4.46e-10,1;UBERON:0006298,4.46e-10,1;UBERON:0002171,8.17e-10,1;UBERON:0006518,8.17e-10,1;UBERON:0008949,8.17e-10,1;UBERON:0000101,8.17e-10,1;UBERON:0002167,8.17e-10,1;UBERON:0000989,1.25e-09,1;UBERON:0008811,1.25e-09,1;UBERON:0006258,1.25e-09,1;UBERON:0005876,1.25e-09,1;UBERON:0004874,1.25e-09,1;UBERON:0000166,1.84e-09,22;UBERON:0007029,1.91e-09,1;UBERON:0002372,2.26e-09,1;UBERON:0001961,2.26e-09,1;UBERON:0001744,2.26e-09,1;UBERON:0001735,2.26e-09,1;UBERON:0007023,1.19e-08,114;UBERON:0003408,2.11e-08,10;UBERON:0001004,5.71e-08,74;UBERON:0000165,3.95e-07,29;UBERON:0000930,3.95e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0.224723484445085,0,0,0,0,0.598390972864896,0,0,0,0.622822248995575,0.251248665256743,0,0,0.605399502633369,0,0.316462387440884,0.211255286311942,0.212604299965044,0.419317291016752,0,0,0,2.85012743741249,4.77400025277816,2.19196984517561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0.25618263945135,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0.784349769176855,0,0,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,1.54561517471583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31801321087491,0,0,0.443430153536676,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1578873420599,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.438770794307945,0,0,4.38616473471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.193978032976839,0,0.90392296312213,0,0,0,0.391102765469606,0,7.04394882639863,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,7.15475664203554,0.314408610199332,7.04206394090232,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0,0,0,0.0634158101939068,0,46.6019101828605,3.47347824872506,0,0.511049710558381,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.706437835654626,0.314231179832004,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,33.1275066291614,0,0,0,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.193373663920732,0,0,0,0,0.730336388246517,33.945966971936,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,12.5808049321579,5.47548192366603,0.0645889098360061,0.0620747142958579,0,0.0636471582781649,0.202117188958219,0.435433495793923,1.36893320434112,1.34704106029175,24.2421054227246,38.9212617158836,0,0,0,0,4.69281884806909,0.733448665097199,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0.224723484445085,0,0,0,0,0.598390972864896,0,0,0,0.622822248995575,0.251248665256743,0,0,0.605399502633369,0,0.316462387440884,0.211255286311942,0.212604299965044,0.419317291016752,0,0,0,2.85012743741249,4.77400025277816,2.19196984517561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0.25618263945135,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0.784349769176855,0,0,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,1.54561517471583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31801321087491,0,0,0.443430153536676,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1578873420599,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.438770794307945,0,0,4.38616473471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.193978032976839,0,0.90392296312213,0,0,0,0.391102765469606,0,7.04394882639863,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,7.15475664203554,0.314408610199332,7.04206394090232,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0,0,0,0.0634158101939068,0,46.6019101828605,3.47347824872506,0,0.511049710558381,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.706437835654626,0.314231179832004,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,33.1275066291614,0,0,0,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.193373663920732,0,0,0,0,0.730336388246517,33.945966971936,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,12.5808049321579,5.47548192366603,0.0645889098360061,0.0620747142958579,0,0.0636471582781649,0.202117188958219,0.435433495793923,1.36893320434112,1.34704106029175,24.2421054227246,38.9212617158836,0,0,0,0,4.69281884806909,0.733448665097199,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p2@SCGB3A1 | |short_description=p2@SCGB3A1 | ||
}} | }} |
Latest revision as of 10:44, 17 September 2015
Short description: | p2@SCGB3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCGB3A1_5end |
Coexpression cluster: | C4490_trachea_parotid_submaxillary_salivary_throat_aorta_lung |
Association with transcript: | 9bp_to_ENST00000292641_5end |
EntrezGene: | SCGB3A1 |
HGNC: | 18384 |
UniProt: | Q96QR1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
non-classical monocyte | 2.21e-25 | 3 |
CD14-low, CD16-positive monocyte | 2.21e-25 | 3 |
intermediate monocyte | 7.65e-09 | 9 |
CD14-positive, CD16-positive monocyte | 7.65e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.73e-18 | 2 |
open tracheal system trachea | 2.24e-18 | 2 |
throat | 5.28e-18 | 2 |
saliva-secreting gland | 1.13e-13 | 6 |
gland of oral region | 1.13e-13 | 6 |
gland of foregut | 1.13e-13 | 6 |
oral gland | 1.13e-13 | 6 |
oral cavity | 1.13e-13 | 6 |
parotid gland | 3.74e-10 | 1 |
cheek | 3.74e-10 | 1 |
parotid gland primordium | 3.74e-10 | 1 |
submandibular gland | 4.46e-10 | 1 |
submandibular gland primordium | 4.46e-10 | 1 |
lower lobe of right lung | 8.17e-10 | 1 |
right lung lobe | 8.17e-10 | 1 |
lower lobe of lung | 8.17e-10 | 1 |
lobe of lung | 8.17e-10 | 1 |
right lung | 8.17e-10 | 1 |
penis | 1.25e-09 | 1 |
intromittent organ | 1.25e-09 | 1 |
lateral plate mesenchyme | 1.25e-09 | 1 |
undifferentiated genital tubercle | 1.25e-09 | 1 |
somatopleure | 1.25e-09 | 1 |
oral opening | 1.84e-09 | 22 |
surface | 1.91e-09 | 1 |
tonsil | 2.26e-09 | 1 |
mucosa-associated lymphoid tissue | 2.26e-09 | 1 |
lymphoid tissue | 2.26e-09 | 1 |
tonsillar ring | 2.26e-09 | 1 |
adult organism | 1.19e-08 | 114 |
gland of gut | 2.11e-08 | 10 |
respiratory system | 5.71e-08 | 74 |
mouth | 3.95e-07 | 29 |
stomodeum | 3.95e-07 | 29 |