UBERON:0001041: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232 | ||
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. | |comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. | ||
|created_by= | |created_by= | ||
| | |def="Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001041 | |||
|is_a=UBERON:0004921 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=foregut | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=developmental_classification;;uberon_slim | ||
| | |synonym="praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut] | ||
|union_of= | |||
|xref=AAO:0011042;;BILA:0000085;;BTO:0000507;;EHDAA2:0000557;;EHDAA:520;;EMAPA:16548;;FBbt:00005379;;FMA:45616;;http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray27.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png;;MA:0001526;;ncithesaurus:Foregut;;SCTID:361409009;;TGMA:0001014;;VHOG:0000285;;XAO:0000232 | |||
}} | }} | ||
Latest revision as of 17:15, 12 September 2014
| Name: | foregut | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut] | ||
| Xrefs: |
| ||
| Synonyms: | "praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut] | ||
| Comments: | Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. | ||
| Alt_id: | UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232 | ||
| Subset: |
developmental_classification uberon_slim |
Gray27.png]
200px-Gray27.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|
Children
| develops from: | UBERON:0000115 (lung epithelium),UBERON:0001043 (esophagus),UBERON:0003894 (liver primordium),UBERON:0003922 (pancreatic epithelial bud),UBERON:0004908 (upper digestive tract),UBERON:0005597 (lung primordium) |
|---|---|
| part of: | UBERON:0000945 (stomach),UBERON:0003258 (endoderm of foregut),UBERON:0003294 (gland of foregut),UBERON:0009143 (esophageal region),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015833 (foregut epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10062-101H8 (stomach, fetal, donor1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 1035-18D5 (stomach, embryo E17)
- 10436-106E4 (signet ring carcinoma cell line:Kato III)
- 10459-106G9
- 10473-106I5
- 10516-107E3
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10062-101H8 (stomach, fetal, donor1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 1035-18D5 (stomach, embryo E17)
- 10436-106E4 (signet ring carcinoma cell line:Kato III)
- 10459-106G9
- 10473-106I5
- 10516-107E3
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001041 (foregut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.14e-28 | FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_689a0fb91bc5a1df5c43e636b781aa70 | p1@FOXA1 |
| 1.14e-28 | FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_689a0fb91bc5a1df5c43e636b781aa70 | p1@FOXA1 |
| 9.69e-28 | FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_db9e5ad693d5ad724ef4507ce3d0c4cb | p2@ALDH3A1 |
| 9.69e-28 | FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_db9e5ad693d5ad724ef4507ce3d0c4cb | p2@ALDH3A1 |
| 6.01e-27 | FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_b84b2db4827b9c517e0ac6cb306715a8 | p1@UGT1A7 |
| 6.01e-27 | FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_b84b2db4827b9c517e0ac6cb306715a8 | p1@UGT1A7 |
| 9.26e-27 | FFCP PHASE1:Hg19::chr8:128231080..128231222,-#_bc5d717a55b126cd43d727b65df52caf | p1@ENST00000500112, p1@uc003ysa.1 |
| 9.26e-27 | FFCP PHASE2:Hg19::chr8:128231080..128231222,-#_bc5d717a55b126cd43d727b65df52caf | p1@ENST00000500112, p1@uc003ysa.1 |
| 3.81e-26 | FFCP PHASE2:Hg19::chr17:19651654..19651665,-#_ebd1c7c2b52384761102e22ff9163545 | p3@ALDH3A1 |
| 3.81e-26 | FFCP PHASE1:Hg19::chr17:19651654..19651665,-#_ebd1c7c2b52384761102e22ff9163545 | p3@ALDH3A1 |
| 6.73e-26 | FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_0187bd4fb18cdc517938cb41f113d0d0 | p1@ESRP2 |
| 6.73e-26 | FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_0187bd4fb18cdc517938cb41f113d0d0 | p1@ESRP2 |
| 3.18e-25 | FFCP PHASE1:Hg19::chr6:64281946..64281977,+#_178fb5e5855507c9a72949ecdc23fca7 | p12@PTP4A1 |
| 3.18e-25 | FFCP PHASE2:Hg19::chr6:64281946..64281977,+#_178fb5e5855507c9a72949ecdc23fca7 | p12@PTP4A1 |
| 1.33e-24 | FFCP PHASE2:Hg19::chr2:238592039..238592054,+#_8684fb1c2c0f56c9583fa1bd87997329 | p4@LRRFIP1 |
| 1.33e-24 | FFCP PHASE1:Hg19::chr2:238592039..238592054,+#_8684fb1c2c0f56c9583fa1bd87997329 | p4@LRRFIP1 |
| 2.5e-24 | FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_64ae6044a87507c1ce54a398eb3955c7 | p1@MYO5B |
| 2.5e-24 | FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_64ae6044a87507c1ce54a398eb3955c7 | p1@MYO5B |
| 6.79e-24 | FFCP PHASE1:Hg19::chr4:41361616..41361632,+#_5e9bf0a8ecd2102ff273b2ef1adc19ac | p8@LIMCH1 |
| 6.79e-24 | FFCP PHASE2:Hg19::chr4:41361616..41361632,+#_5e9bf0a8ecd2102ff273b2ef1adc19ac | p8@LIMCH1 |
| 8.3e-24 | FFCP PHASE1:Hg19::chr9:124499430..124499462,+#_ca75ed94f9bbccb1e3aacc939f3d1036 | p@chr9:124499430..124499462, + |
| 8.3e-24 | FFCP PHASE2:Hg19::chr9:124499430..124499462,+#_ca75ed94f9bbccb1e3aacc939f3d1036 | p@chr9:124499430..124499462, + |
| 1.18e-23 | FFCP PHASE1:Hg19::chr4:41361634..41361643,+#_1fc3978728b0660a32738c4481394d4c | p19@LIMCH1 |
| 1.18e-23 | FFCP PHASE2:Hg19::chr4:41361634..41361643,+#_1fc3978728b0660a32738c4481394d4c | p19@LIMCH1 |
| 3.83e-23 | FFCP PHASE2:Hg19::chr2:211543115..211543126,+#_29adadf836470ec0c04f19b89bff3953 | p@chr2:211543115..211543126, + |
| 3.83e-23 | FFCP PHASE1:Hg19::chr2:211543115..211543126,+#_29adadf836470ec0c04f19b89bff3953 | p@chr2:211543115..211543126, + |
| 5.47e-23 | FFCP PHASE1:Hg19::chr4:41361774..41361783,+#_28383f0966746aa3fe21641967a7fb39 | p26@LIMCH1 |
| 5.47e-23 | FFCP PHASE2:Hg19::chr4:41361774..41361783,+#_28383f0966746aa3fe21641967a7fb39 | p26@LIMCH1 |
| 5.63e-23 | FFCP PHASE1:Mm9::chr16:34807407..34807430,+#_62bb155efe3d664c74c3ffbb95ff0d63 | p@chr16:34807407..34807430, + |
| 5.63e-23 | FFCP PHASE2:Mm9::chr16:34807407..34807430,+#_62bb155efe3d664c74c3ffbb95ff0d63 | p@chr16:34807407..34807430, + |
| 1.03e-22 | FFCP PHASE2:Hg19::chr1:207263643..207263662,+#_1dc8c57ff1796534f8ccb23b2b3b0e65 | p@chr1:207263643..207263662, + |
| 1.03e-22 | FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_1dc8c57ff1796534f8ccb23b2b3b0e65 | p3@CLDN7 |
| 1.03e-22 | FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_1dc8c57ff1796534f8ccb23b2b3b0e65 | p3@CLDN7 |
| 1.03e-22 | FFCP PHASE1:Hg19::chr1:207263643..207263662,+#_1dc8c57ff1796534f8ccb23b2b3b0e65 | p@chr1:207263643..207263662, + |
| 1.37e-22 | FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_0f4781060b0aac8774d73b2f657164f9 | p1@TMEM184A |
| 1.37e-22 | FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_0f4781060b0aac8774d73b2f657164f9 | p1@TMEM184A |
| 1.75e-22 | FFCP PHASE1:Hg19::chr6:64282212..64282247,+#_54b8a8882684a0ab1b8733afbbab9610 | p19@PTP4A1 |
| 1.75e-22 | FFCP PHASE2:Hg19::chr6:64282212..64282247,+#_54b8a8882684a0ab1b8733afbbab9610 | p19@PTP4A1 |
| 2.01e-22 | FFCP PHASE2:Mm9::chr2:91034924..91034946,-#_cd3442e5463e864aebab3d4129b66262 | p2@Nr1h3 |
| 2.01e-22 | FFCP PHASE1:Mm9::chr2:91034924..91034946,-#_cd3442e5463e864aebab3d4129b66262 | p2@Nr1h3 |
| 2.02e-22 | FFCP PHASE1:Hg19::chr3:161318448..161318456,+#_2414134c6c44a83e6b35dc676bd68cda | p@chr3:161318448..161318456, + |
| 2.02e-22 | FFCP PHASE2:Hg19::chr3:161318448..161318456,+#_2414134c6c44a83e6b35dc676bd68cda | p@chr3:161318448..161318456, + |
| 2.04e-22 | FFCP PHASE2:Hg19::chr2:211466992..211467008,+#_1d6a00d1e6b29bec23bd441eb9a51d2b | p@chr2:211466992..211467008, + |
| 2.04e-22 | FFCP PHASE1:Hg19::chr2:211466992..211467008,+#_1d6a00d1e6b29bec23bd441eb9a51d2b | p@chr2:211466992..211467008, + |
| 2.58e-22 | FFCP PHASE2:Hg19::chr2:226378208..226378213,+#_2715ef31bf1fd7bbdb0eaf743a4f511e | p@chr2:226378208..226378213, + |
| 2.58e-22 | FFCP PHASE1:Hg19::chr2:226378208..226378213,+#_2715ef31bf1fd7bbdb0eaf743a4f511e | p@chr2:226378208..226378213, + |
| 9.27e-22 | FFCP PHASE1:Mm9::chr1:173697275..173697301,+#_820e6386b8a2d8c32818320549304bf8 | p1@Slamf1 |
| 9.27e-22 | FFCP PHASE2:Mm9::chr1:173697275..173697301,+#_820e6386b8a2d8c32818320549304bf8 | p1@Slamf1 |
| 1.27e-21 | FFCP PHASE2:Hg19::chr13:76334824..76334862,+#_69921bb903a14d1da12cc926bee0f981 | p2@LMO7 |
| 1.27e-21 | FFCP PHASE1:Hg19::chr13:76334824..76334862,+#_69921bb903a14d1da12cc926bee0f981 | p2@LMO7 |
| 1.3e-21 | FFCP PHASE1:Hg19::chr2:234296792..234296806,+#_31c63f5141925e7944d275d221f81841 | p13@DGKD |
| 1.3e-21 | FFCP PHASE2:Hg19::chr2:234296792..234296806,+#_31c63f5141925e7944d275d221f81841 | p13@DGKD |
| 1.56e-21 | FFCP PHASE1:Mm9::chr11:61474548..61474552,+#_be42603dd8e19dac17e644960de8588d | p@chr11:61474548..61474552, + |
| 1.56e-21 | FFCP PHASE2:Mm9::chr11:61474548..61474552,+#_be42603dd8e19dac17e644960de8588d | p@chr11:61474548..61474552, + |
| 2.84e-21 | FFCP PHASE1:Mm9::chr13:41520525..41520563,-#_566995d922d9f5d2cd74c5748f9c2908 | p@chr13:41520525..41520563, - |
| 2.84e-21 | FFCP PHASE2:Mm9::chr13:41520525..41520563,-#_566995d922d9f5d2cd74c5748f9c2908 | p@chr13:41520525..41520563, - |
| 3.33e-21 | FFCP PHASE1:Hg19::chr16:87872769..87872797,-#_721d53e5b54853e7f677706fa8a0d618 | p@chr16:87872769..87872797, - |
| 3.33e-21 | FFCP PHASE2:Hg19::chr16:87872769..87872797,-#_721d53e5b54853e7f677706fa8a0d618 | p@chr16:87872769..87872797, - |
| 3.48e-21 | FFCP PHASE2:Mm9::chr16:34807285..34807303,+#_48feeaf441af50f13761c72b3b4022eb | p@chr16:34807285..34807303, + |
| 3.48e-21 | FFCP PHASE1:Mm9::chr16:34807285..34807303,+#_48feeaf441af50f13761c72b3b4022eb | p@chr16:34807285..34807303, + |
| 3.59e-21 | FFCP PHASE1:Hg19::chr7:101917482..101917507,+#_76c910a108ac234fe650c60d34da1626 | p6@CUX1 |
| 3.59e-21 | FFCP PHASE2:Hg19::chr7:101917482..101917507,+#_76c910a108ac234fe650c60d34da1626 | p6@CUX1 |
| 5.73e-21 | FFCP PHASE1:Hg19::chr9:140119618..140119635,+#_1535f834338ebf79079d399b6ca567b1 | p1@C9orf169 |
| 5.73e-21 | FFCP PHASE2:Hg19::chr9:140119618..140119635,+#_1535f834338ebf79079d399b6ca567b1 | p1@C9orf169 |
| 7.22e-21 | FFCP PHASE2:Hg19::chr14:64579753..64579770,+#_0bccdb975072e8173214ec6e55c3dc8c | p@chr14:64579753..64579770, + |
| 7.22e-21 | FFCP PHASE1:Hg19::chr14:64579753..64579770,+#_0bccdb975072e8173214ec6e55c3dc8c | p@chr14:64579753..64579770, + |
| 9.91e-21 | FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_b58e3daf533a0e448943c2819bba4403 | p@chr16:68260798..68260800, - |
| 9.91e-21 | FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_b58e3daf533a0e448943c2819bba4403 | p@chr16:68260798..68260800, - |
| 1.27e-20 | FFCP PHASE2:Hg19::chr1:100111394..100111419,+#_ad9a90a8a9c189423a7a81be375b5d26 | p6@PALMD |
| 1.27e-20 | FFCP PHASE1:Hg19::chr1:100111394..100111419,+#_ad9a90a8a9c189423a7a81be375b5d26 | p6@PALMD |
| 1.28e-20 | FFCP PHASE2:Hg19::chr2:211540478..211540490,+#_376ab95fd74e85ce395f0d7326b77aff | p@chr2:211540478..211540490, + |
| 1.28e-20 | FFCP PHASE1:Hg19::chr2:211540478..211540490,+#_376ab95fd74e85ce395f0d7326b77aff | p@chr2:211540478..211540490, + |
| 1.59e-20 | FFCP PHASE2:Hg19::chr2:211469821..211469857,+#_025211f61a562c717237bd857485b69b | p8@CPS1 |
| 1.59e-20 | FFCP PHASE1:Hg19::chr2:211469821..211469857,+#_025211f61a562c717237bd857485b69b | p8@CPS1 |
| 1.99e-20 | FFCP PHASE1:Hg19::chr7:158766986..158767004,+#_4b05bc84f3f5d0701fd9eb8958670912 | p@chr7:158766986..158767004, + |
| 1.99e-20 | FFCP PHASE2:Hg19::chr7:158766986..158767004,+#_4b05bc84f3f5d0701fd9eb8958670912 | p@chr7:158766986..158767004, + |
| 2.04e-20 | FFCP PHASE1:Hg19::chr21:44817397..44817432,-#_440c670e65b3172c091a3fd909c7384d | p@chr21:44817397..44817432, - |
| 2.04e-20 | FFCP PHASE2:Hg19::chr21:44817397..44817432,-#_440c670e65b3172c091a3fd909c7384d | p@chr21:44817397..44817432, - |
| 2.23e-20 | FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_458e0e419e934cf77e880e2239d4164a | p1@PTK6 |
| 2.23e-20 | FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_458e0e419e934cf77e880e2239d4164a | p1@PTK6 |
| 2.89e-20 | FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_985f84d33bfadadadabcc932ae88c1a2 | p1@AK297894 |
| 2.89e-20 | FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_985f84d33bfadadadabcc932ae88c1a2 | p1@AK297894 |
| 2.89e-20 | FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_985f84d33bfadadadabcc932ae88c1a2 | p1@ENST00000441266 |
| 2.89e-20 | FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_985f84d33bfadadadabcc932ae88c1a2 | p7@uc003ysb.2 |
| 2.89e-20 | FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_985f84d33bfadadadabcc932ae88c1a2 | p@chr2:53732986..53732989, - |
| 2.89e-20 | FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_985f84d33bfadadadabcc932ae88c1a2 | p2@AK297894 |
| 2.89e-20 | FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_985f84d33bfadadadabcc932ae88c1a2 | p@chr16:87874486..87874492, - |
| 2.89e-20 | FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_985f84d33bfadadadabcc932ae88c1a2 | p@chr16:87874486..87874492, - |
| 2.89e-20 | FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_985f84d33bfadadadabcc932ae88c1a2 | p@chr2:53732986..53732989, - |
| 2.89e-20 | FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_985f84d33bfadadadabcc932ae88c1a2 | p@chr16:87869864..87869878, + |
| 2.89e-20 | FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_985f84d33bfadadadabcc932ae88c1a2 | p@chr17:79098633..79098647, - |
| 2.89e-20 | FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_985f84d33bfadadadabcc932ae88c1a2 | p@chr16:87869864..87869878, + |
| 2.89e-20 | FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_985f84d33bfadadadabcc932ae88c1a2 | p7@uc003ysb.2 |
| 2.89e-20 | FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_985f84d33bfadadadabcc932ae88c1a2 | p9@ALPP |
| 2.89e-20 | FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_985f84d33bfadadadabcc932ae88c1a2 | p6@ALPP |
| 2.89e-20 | FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_985f84d33bfadadadabcc932ae88c1a2 | p6@ALPP |
| 2.89e-20 | FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_985f84d33bfadadadabcc932ae88c1a2 | p2@AK297894 |
| 2.89e-20 | FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_985f84d33bfadadadabcc932ae88c1a2 | p@chr17:79098633..79098647, - |
| 2.89e-20 | FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_985f84d33bfadadadabcc932ae88c1a2 | p9@ALPP |
| 2.89e-20 | FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_985f84d33bfadadadabcc932ae88c1a2 | p1@ENST00000441266 |
