UBERON:0001895: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_62003-MA_0000197 | ||
| | |anatomical_img_id=FMA:62003 | ||
|comment=the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. | |comment=the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. | ||
|created_by= | |created_by= | ||
| | |def="Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0010092 | |develops_from=UBERON:0010092 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001895 | |||
|is_a=UBERON:0004733 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=metencephalon | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002028 | |part_of=UBERON:0002028 | ||
|preceded_by= | |preceded_by= | ||
|property_value="dubious_for_taxon" NCBITaxon:7955;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset=uberon_slim | |||
|synonym="epencephalon" EXACT [ncithesaurus:Epencephalon];;"epencephalon-2" RELATED [FMA:62003] | |||
|union_of= | |||
|xref=BTO:0000673;;EHDAA2:0001149;;EHDAA:5498;;EMAPA:17071;;FMA:62003;;GAID:594;;http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png;;MA:0000197;;MESH:A.08.186.211.132.810.428;;ncithesaurus:Epencephalon;;NIF_GrossAnatomy:birnlex_965;;VHOG:0000741 | |||
}} | }} |
Latest revision as of 17:22, 12 September 2014
Name: | metencephalon | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon] | ||
Xrefs: |
| ||
Synonyms: |
"epencephalon" EXACT [ncithesaurus:Epencephalon] "epencephalon-2" RELATED [FMA:62003] | ||
Comments: | the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. | ||
Alt_id: | UBERON:FMA_62003-MA_0000197 | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004733(segmental subdivision of hindbrain) |
---|---|
develops_from: | UBERON:0010092(future metencephalon) |
part_of: | UBERON:0002028(hindbrain) |
Children
part of: | UBERON:0000988 (pons),UBERON:0002037 (cerebellum),UBERON:0002680 (regional part of metencephalon) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10033-101E6 (pons, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
- 10121-102F4 (cerebellum)
... further results Mouse (Mus musculus)
- 10033-101E6 (pons, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
- 10121-102F4 (cerebellum)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001895 (metencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
4.91e-91 | FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_d8bec38bad73c77e246f6c9a3c75bc12 | p17@BDNF |
4.91e-91 | FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_d8bec38bad73c77e246f6c9a3c75bc12 | p17@BDNF |
1.37e-87 | FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_c148a72f7dad25221c9b14131358ee33 | p29@RIMS1 |
1.37e-87 | FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_c148a72f7dad25221c9b14131358ee33 | p11@RAB37 |
1.37e-87 | FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_c148a72f7dad25221c9b14131358ee33 | p2@CU680380 |
1.37e-87 | FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_c148a72f7dad25221c9b14131358ee33 | p29@RIMS1 |
1.37e-87 | FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_c148a72f7dad25221c9b14131358ee33 | p11@RAB37 |
1.37e-87 | FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_c148a72f7dad25221c9b14131358ee33 | p4@AB384137 |
1.37e-87 | FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_c148a72f7dad25221c9b14131358ee33 | p1@KIAA1024 |
1.37e-87 | FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_c148a72f7dad25221c9b14131358ee33 | p4@AB384137 |
1.37e-87 | FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_c148a72f7dad25221c9b14131358ee33 | p2@CU680380 |
1.37e-87 | FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_c148a72f7dad25221c9b14131358ee33 | p@chr17:72857611..72857619, - |
1.37e-87 | FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_c148a72f7dad25221c9b14131358ee33 | p22@CA10 |
1.37e-87 | FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_c148a72f7dad25221c9b14131358ee33 | p1@KIAA1024 |
1.37e-87 | FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_c148a72f7dad25221c9b14131358ee33 | p@chr17:72857611..72857619, - |
1.37e-87 | FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_c148a72f7dad25221c9b14131358ee33 | p22@CA10 |
3.19e-78 | FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_0de7ac27d5768e3316e0468a77ff0b95 | p3@CRTAM |
3.19e-78 | FFCP PHASE2:Hg19::chr5:20575610..20575619,-#_0de7ac27d5768e3316e0468a77ff0b95 | p11@CDH18 |
3.19e-78 | FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_0de7ac27d5768e3316e0468a77ff0b95 | p3@CRTAM |
3.19e-78 | FFCP PHASE1:Hg19::chr5:20575610..20575619,-#_0de7ac27d5768e3316e0468a77ff0b95 | p11@CDH18 |
2.16e-70 | FFCP PHASE2:Hg19::chr9:135457457..135457468,+#_1fa645bbfaf1562ebaba33109fcd9827 | p4@BARHL1 |
2.16e-70 | FFCP PHASE1:Hg19::chr9:135457457..135457468,+#_1fa645bbfaf1562ebaba33109fcd9827 | p4@BARHL1 |
2.58e-70 | FFCP PHASE1:Hg19::chr17:72667518..72667529,+#_06bbfc2611d1990bfbfd4c1272a17d73 | p8@RAB37 |
2.58e-70 | FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_06bbfc2611d1990bfbfd4c1272a17d73 | p@chr4:117873850..117873861, - |
2.58e-70 | FFCP PHASE2:Hg19::chr20:30616906..30616921,-#_06bbfc2611d1990bfbfd4c1272a17d73 | p@chr20:30616906..30616921, - |
2.58e-70 | FFCP PHASE1:Hg19::chr1:159842835..159842846,-#_06bbfc2611d1990bfbfd4c1272a17d73 | p1@ENST00000536764 |
2.58e-70 | FFCP PHASE2:Hg19::chr1:159842835..159842846,-#_06bbfc2611d1990bfbfd4c1272a17d73 | p1@ENST00000536764 |
2.58e-70 | FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_06bbfc2611d1990bfbfd4c1272a17d73 | p@chr4:117873850..117873861, - |
2.58e-70 | FFCP PHASE2:Hg19::chr17:72667518..72667529,+#_06bbfc2611d1990bfbfd4c1272a17d73 | p8@RAB37 |
2.58e-70 | FFCP PHASE1:Hg19::chr20:30616906..30616921,-#_06bbfc2611d1990bfbfd4c1272a17d73 | p@chr20:30616906..30616921, - |
3.09e-70 | FFCP PHASE1:Hg19::chr20:62795787..62795793,+#_5a6ede428ce1b11a0d377ff57915c869 | p8@MYT1 |
3.09e-70 | FFCP PHASE1:Hg19::chr17:50235999..50236008,-#_5a6ede428ce1b11a0d377ff57915c869 | p21@CA10 |
3.09e-70 | FFCP PHASE2:Hg19::chr17:50235999..50236008,-#_5a6ede428ce1b11a0d377ff57915c869 | p21@CA10 |
3.09e-70 | FFCP PHASE2:Hg19::chr20:62795787..62795793,+#_5a6ede428ce1b11a0d377ff57915c869 | p8@MYT1 |
9.93e-69 | FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_cb849ed92cc67c62d11c7cab263b57e5 | p7@SEZ6L |
9.93e-69 | FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_cb849ed92cc67c62d11c7cab263b57e5 | p7@SEZ6L |
3.04e-66 | FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_ef66f6393cda2b639c5d73239b267c31 | p@chr2:72381655..72381673, - |
3.04e-66 | FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_ef66f6393cda2b639c5d73239b267c31 | p@chr2:72381655..72381673, - |
3.75e-66 | FFCP PHASE1:Hg19::chr11:64146203..64146207,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr11:64146203..64146207, + |
3.75e-66 | FFCP PHASE1:Hg19::chr11:108438755..108438763,-#_3a4e3432fe51b39a7b889d01fc65023c | p20@EXPH5 |
3.75e-66 | FFCP PHASE1:Hg19::chr1:24526024..24526028,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:24526024..24526028, + |
3.75e-66 | FFCP PHASE1:Hg19::chr12:72667119..72667130,+#_3a4e3432fe51b39a7b889d01fc65023c | p16@TRHDE |
3.75e-66 | FFCP PHASE1:Hg19::chr1:206611115..206611119,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:206611115..206611119, + |
3.75e-66 | FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_3a4e3432fe51b39a7b889d01fc65023c | p8@CRTAM |
3.75e-66 | FFCP PHASE1:Hg19::chr13:100633194..100633202,+#_3a4e3432fe51b39a7b889d01fc65023c | p6@AK298232 |
3.75e-66 | FFCP PHASE1:Hg19::chr14:79746650..79746659,+#_3a4e3432fe51b39a7b889d01fc65023c | p23@NRXN3 |
3.75e-66 | FFCP PHASE1:Hg19::chr16:3656599..3656608,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:3656599..3656608, - |
3.75e-66 | FFCP PHASE1:Hg19::chr19:6501233..6501243,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr19:6501233..6501243, - |
3.75e-66 | FFCP PHASE1:Hg19::chr1:2241890..2241895,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:2241890..2241895, - |
3.75e-66 | FFCP PHASE1:Hg19::chr1:228602576..228602587,-#_3a4e3432fe51b39a7b889d01fc65023c | p1@CU689740 |
3.75e-66 | FFCP PHASE1:Hg19::chr16:49357829..49357832,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:49357829..49357832, + |
3.75e-66 | FFCP PHASE1:Hg19::chr20:45062007..45062020,+#_3a4e3432fe51b39a7b889d01fc65023c | p7@AK054905 |
3.75e-66 | FFCP PHASE1:Hg19::chr14:77582887..77582896,+#_3a4e3432fe51b39a7b889d01fc65023c | p12@TMEM63C |
3.75e-66 | FFCP PHASE1:Hg19::chr11:133821982..133821993,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr11:133821982..133821993, - |
3.75e-66 | FFCP PHASE1:Hg19::chr21:47268058..47268079,+#_3a4e3432fe51b39a7b889d01fc65023c | p5@PCBP3 |
3.75e-66 | FFCP PHASE1:Hg19::chr11:133902562..133902580,+#_3a4e3432fe51b39a7b889d01fc65023c | p1@ENST00000529070 |
3.75e-66 | FFCP PHASE1:Hg19::chr17:48545700..48545707,+#_3a4e3432fe51b39a7b889d01fc65023c | p5@ACSF2 |
3.75e-66 | FFCP PHASE1:Hg19::chr17:39553443..39553452,-#_3a4e3432fe51b39a7b889d01fc65023c | p2@KRT31 |
3.75e-66 | FFCP PHASE1:Hg19::chr17:72673771..72673779,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr17:72673771..72673779, - |
3.75e-66 | FFCP PHASE1:Hg19::chr1:1953233..1953242,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:1953233..1953242, - |
3.75e-66 | FFCP PHASE1:Hg19::chr16:23419354..23419361,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:23419354..23419361, + |
3.75e-66 | FFCP PHASE1:Hg19::chr10:71562284..71562291,+#_3a4e3432fe51b39a7b889d01fc65023c | p14@COL13A1 |
3.75e-66 | FFCP PHASE1:Hg19::chr18:8783620..8783627,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr18:8783620..8783627, + |
3.75e-66 | FFCP PHASE1:Hg19::chr17:72667207..72667214,+#_3a4e3432fe51b39a7b889d01fc65023c | p12@RAB37 |
3.75e-66 | FFCP PHASE1:Hg19::chr16:3656616..3656628,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:3656616..3656628, - |
3.75e-66 | FFCP PHASE1:Hg19::chr21:47314143..47314154,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr21:47314143..47314154, - |
3.75e-66 | FFCP PHASE1:Hg19::chr11:123396575..123396583,+#_3a4e3432fe51b39a7b889d01fc65023c | p9@GRAMD1B |
3.75e-66 | FFCP PHASE1:Hg19::chr13:42792979..42793012,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr13:42792979..42793012, + |
3.75e-66 | FFCP PHASE1:Hg19::chr17:72667483..72667484,+#_3a4e3432fe51b39a7b889d01fc65023c | p18@RAB37 |
3.75e-66 | FFCP PHASE1:Hg19::chr1:59775752..59775763,+#_3a4e3432fe51b39a7b889d01fc65023c | p19@FGGY |
3.75e-66 | FFCP PHASE1:Hg19::chr16:608967..608994,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:608967..608994, + |
3.75e-66 | FFCP PHASE1:Hg19::chr20:30616884..30616898,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr20:30616884..30616898, - |
3.75e-66 | FFCP PHASE1:Hg19::chr22:17891551..17891560,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr22:17891551..17891560, + |
3.75e-66 | FFCP PHASE1:Hg19::chr19:17992758..17992791,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr19:17992758..17992791, + |
3.75e-66 | FFCP PHASE1:Hg19::chr10:122216316..122216327,+#_3a4e3432fe51b39a7b889d01fc65023c | p5@PPAPDC1A |
3.75e-66 | FFCP PHASE1:Hg19::chr14:60048980..60048989,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr14:60048980..60048989, - |
3.75e-66 | FFCP PHASE1:Hg19::chr15:81489344..81489353,+#_3a4e3432fe51b39a7b889d01fc65023c | p31@IL16 |
3.75e-66 | FFCP PHASE1:Hg19::chr16:87376991..87377002,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:87376991..87377002, - |
3.75e-66 | FFCP PHASE1:Hg19::chr11:65999312..65999320,+#_3a4e3432fe51b39a7b889d01fc65023c | p30@PACS1 |
3.75e-66 | FFCP PHASE1:Hg19::chr21:32624498..32624505,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr21:32624498..32624505, - |
3.75e-66 | FFCP PHASE1:Hg19::chr16:87377029..87377039,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:87377029..87377039, - |
3.75e-66 | FFCP PHASE1:Hg19::chr17:588406..588409,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr17:588406..588409, - |
3.75e-66 | FFCP PHASE1:Hg19::chr20:45062215..45062225,+#_3a4e3432fe51b39a7b889d01fc65023c | p4@AK054905 |
3.75e-66 | FFCP PHASE1:Hg19::chr1:46639505..46639517,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:46639505..46639517, + |
3.75e-66 | FFCP PHASE1:Hg19::chr20:45062029..45062044,+#_3a4e3432fe51b39a7b889d01fc65023c | p6@AK054905 |
3.75e-66 | FFCP PHASE1:Hg19::chr1:190445111..190445122,-#_3a4e3432fe51b39a7b889d01fc65023c | p15@FAM5C |
3.75e-66 | FFCP PHASE1:Hg19::chr1:244355163..244355179,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:244355163..244355179, + |
3.75e-66 | FFCP PHASE1:Hg19::chr20:45061929..45061936,+#_3a4e3432fe51b39a7b889d01fc65023c | p8@AK054905 |
3.75e-66 | FFCP PHASE1:Hg19::chr16:612039..612048,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr16:612039..612048, - |
3.75e-66 | FFCP PHASE1:Hg19::chr13:100633107..100633110,+#_3a4e3432fe51b39a7b889d01fc65023c | p7@AK298232 |
3.75e-66 | FFCP PHASE1:Hg19::chr14:24898354..24898366,-#_3a4e3432fe51b39a7b889d01fc65023c | p8@CBLN3 |
3.75e-66 | FFCP PHASE1:Hg19::chr18:66918040..66918047,-#_3a4e3432fe51b39a7b889d01fc65023c | p@chr18:66918040..66918047, - |
3.75e-66 | FFCP PHASE1:Hg19::chr20:45062290..45062300,+#_3a4e3432fe51b39a7b889d01fc65023c | p3@AK054905 |
3.75e-66 | FFCP PHASE1:Hg19::chr1:244355180..244355201,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:244355180..244355201, + |
3.75e-66 | FFCP PHASE1:Hg19::chr11:104480062..104480069,-#_3a4e3432fe51b39a7b889d01fc65023c | p3@ENST00000538641 |
3.75e-66 | FFCP PHASE1:Hg19::chr12:78430875..78430887,+#_3a4e3432fe51b39a7b889d01fc65023c | p1@AB384547 |
3.75e-66 | FFCP PHASE1:Hg19::chr14:77582934..77582947,+#_3a4e3432fe51b39a7b889d01fc65023c | p9@TMEM63C |
3.75e-66 | FFCP PHASE1:Hg19::chr18:39687774..39687782,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr18:39687774..39687782, + |
3.75e-66 | FFCP PHASE1:Hg19::chr20:45061641..45061646,-#_3a4e3432fe51b39a7b889d01fc65023c | p13@ELMO2 |
3.75e-66 | FFCP PHASE1:Hg19::chr1:106499338..106499354,+#_3a4e3432fe51b39a7b889d01fc65023c | p@chr1:106499338..106499354, + |