Personal tools

UBERON:0009497: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0009497
|alt_id=
|name=epithelium of foregut-midgut junction
|namespace=
|def=
|xref=EHDAA2:0000573;;EMAPA:16564
|is_a=UBERON:0000490;;UBERON:0003929
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=emapa_ehdaa2
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0009550
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009497
|is_a=UBERON:0000490 ;;UBERON:0003929 ;;UBERON:0005911
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0006235
|name=epithelium of foregut-midgut junction
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006235;;UBERON:0003929;;UBERON:0006235
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=emapa_ehdaa2
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0000573;;EMAPA:16564
}}
}}

Latest revision as of 18:05, 12 September 2014

Name:epithelium of foregut-midgut junction
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0000573

EMAPA:16564
Subset: emapa_ehdaa2

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000490(unilaminar epithelium),UBERON:0003929(gut epithelium),UBERON:0005911(endo-epithelium)
develops_from:UBERON:0009550(endoderm of foregut-midgut junction)
part_of:UBERON:0006235(foregut-midgut junction),UBERON:0003929(gut epithelium),UBERON:0006235(foregut-midgut junction)



Children

is a:UBERON:0003894 (liver primordium),UBERON:0004912 (biliary bud),UBERON:0008835 (hepatic diverticulum)
develops from:UBERON:0003922 (pancreatic epithelial bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009497 (epithelium of foregut-midgut junction), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data