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{{CL
{{CL
|id=CL:0000746
|alt_id=
|name=cardiac myocyte
|namespace=efo
|def="Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908]
|xref=BTO:0001539;;FMA:14067;;FMA:83808
|is_a=CL:0000187;;CL:0000737;;CL:0002494
|synonym="cardiac myocyte" EXACT [];;"cardiocyte" BROAD [];;"cardiomyocyte" EXACT [];;"heart muscle cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000513
|develops_from=CL:0000513
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000746
|is_a=CL:0000737 ;;CL:0002494
|is_obsolete=
|located_in=
|located_in=
|name=cardiac muscle cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0007100
|part_of=UBERON:0007100
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="cardiac myocyte" EXACT [];;"cardiocyte" BROAD [];;"cardiomyocyte" EXACT [];;"heart muscle cell" EXACT []
|union_of=
|xref=BTO:0001539;;FMA:14067;;FMA:83808
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:cardiac muscle cell
Namespace:FANTOM
Definition:"Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908]
Xrefs:
links:

BTO:0001539
FMA:14067

FMA:83808
Synonyms: "cardiac myocyte" EXACT []
"cardiocyte" BROAD []
"cardiomyocyte" EXACT []
"heart muscle cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000737(striated muscle cell),CL:0002494(cardiocyte)
develops_from:CL:0000513(cardiac muscle myoblast)
part_of:UBERON:0007100(primary circulatory organ)



Children


derives from:FF:0000106 (mouse cardiac myocyte sample),FF:0000118 (human cardiac myocyte sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000746 (cardiac muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_a07bd44b75199458fa75e1dfe3da2ddep@chr9:102766842..102766853, +
1.58e-86FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_a07bd44b75199458fa75e1dfe3da2ddep@chr9:102766842..102766853, +
1.58e-86FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_a07bd44b75199458fa75e1dfe3da2ddep@chr7:106471695..106471701, +
1.58e-86FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_a07bd44b75199458fa75e1dfe3da2ddep3@E030003E18Rik
1.58e-86FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_a07bd44b75199458fa75e1dfe3da2ddep@chr9:56096674..56096680, +
1.58e-86FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_a07bd44b75199458fa75e1dfe3da2ddep@chr9:56096674..56096680, +
1.58e-86FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_a07bd44b75199458fa75e1dfe3da2ddep3@E030003E18Rik
1.58e-86FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_a07bd44b75199458fa75e1dfe3da2ddep@chr7:106471695..106471701, +
2.39e-66FFCP PHASE1:Hg19::chr7:35238792..35238801,-#_f37fbdb4919f4b8e92f5acc5ff65cc01p@chr7:35238792..35238801, -
2.39e-66FFCP PHASE1:Hg19::chr14:61929910..61929917,+#_f37fbdb4919f4b8e92f5acc5ff65cc01p60@PRKCH
2.39e-66FFCP PHASE2:Hg19::chr7:35238792..35238801,-#_f37fbdb4919f4b8e92f5acc5ff65cc01p@chr7:35238792..35238801, -
2.39e-66FFCP PHASE2:Hg19::chr14:61929910..61929917,+#_f37fbdb4919f4b8e92f5acc5ff65cc01p60@PRKCH
2.4e-66FFCP PHASE1:Hg19::chrX:131545245..131545250,-#_067ea3e3bf6b0e8ab21e1443be73b9ccp32@MBNL3
2.4e-66FFCP PHASE2:Hg19::chrX:131545245..131545250,-#_067ea3e3bf6b0e8ab21e1443be73b9ccp32@MBNL3
1.33e-65FFCP PHASE1:Mm9::chr6:91183204..91183213,+#_a053c1b7d47fbe47f2bbed625615067fp@chr6:91183204..91183213, +
1.33e-65FFCP PHASE2:Mm9::chr6:91183204..91183213,+#_a053c1b7d47fbe47f2bbed625615067fp@chr6:91183204..91183213, +
2.21e-65FFCP PHASE2:Mm9::chr19:20567153..20567160,+#_01b9468348f83ce6a3e94700a3c12fd7p7@E030003E18Rik
2.21e-65FFCP PHASE1:Mm9::chr19:20567153..20567160,+#_01b9468348f83ce6a3e94700a3c12fd7p7@E030003E18Rik
2.19e-53FFCP PHASE2:Hg19::chrX:131545301..131545315,-#_501f1fe5d153e8fa15b2becb2698d74ap22@MBNL3
2.19e-53FFCP PHASE1:Hg19::chrX:131545301..131545315,-#_501f1fe5d153e8fa15b2becb2698d74ap22@MBNL3
2.87e-53FFCP PHASE1:Hg19::chr4:2869695..2869706,+#_d534d07d17323034476789aac7abb61dp30@ADD1
2.87e-53FFCP PHASE2:Hg19::chr4:2869695..2869706,+#_d534d07d17323034476789aac7abb61dp30@ADD1
4.9e-53FFCP PHASE1:Mm9::chr19:20567067..20567078,+#_27a36d01d3c3ec5531abc3489e2da992p6@E030003E18Rik
4.9e-53FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_27a36d01d3c3ec5531abc3489e2da992p@chr11:43827555..43827566, +
4.9e-53FFCP PHASE2:Mm9::chr19:20567067..20567078,+#_27a36d01d3c3ec5531abc3489e2da992p6@E030003E18Rik
4.9e-53FFCP PHASE1:Mm9::chr7:117772048..117772059,+#_27a36d01d3c3ec5531abc3489e2da992p@chr7:117772048..117772059, +
4.9e-53FFCP PHASE1:Mm9::chr8:11239175..11239178,-#_27a36d01d3c3ec5531abc3489e2da992p@chr8:11239175..11239178, -
4.9e-53FFCP PHASE1:Mm9::chr6:91222464..91222477,+#_27a36d01d3c3ec5531abc3489e2da992p@chr6:91222464..91222477, +
4.9e-53FFCP PHASE2:Mm9::chr3:103596528..103596539,-#_27a36d01d3c3ec5531abc3489e2da992p@chr3:103596528..103596539, -
4.9e-53FFCP PHASE2:Mm9::chr7:117772048..117772059,+#_27a36d01d3c3ec5531abc3489e2da992p@chr7:117772048..117772059, +
4.9e-53FFCP PHASE1:Mm9::chr3:103596528..103596539,-#_27a36d01d3c3ec5531abc3489e2da992p@chr3:103596528..103596539, -
4.9e-53FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_27a36d01d3c3ec5531abc3489e2da992p@chr11:43827555..43827566, +
4.9e-53FFCP PHASE2:Mm9::chr8:11239175..11239178,-#_27a36d01d3c3ec5531abc3489e2da992p@chr8:11239175..11239178, -
4.9e-53FFCP PHASE2:Mm9::chr6:91222464..91222477,+#_27a36d01d3c3ec5531abc3489e2da992p@chr6:91222464..91222477, +
7.35e-53FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_a96318dfc385ed34dacd398c81617579p2@Il6
7.35e-53FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_a96318dfc385ed34dacd398c81617579p2@Il6
1.18e-44FFCP PHASE2:Mm9::chr8:11449034..11449045,+#_a43b82134e33031b0d8eb285bf6138bfp@chr8:11449034..11449045, +
1.18e-44FFCP PHASE2:Mm9::chr19:20567168..20567179,+#_a43b82134e33031b0d8eb285bf6138bfp5@E030003E18Rik
1.18e-44FFCP PHASE1:Mm9::chr8:11449034..11449045,+#_a43b82134e33031b0d8eb285bf6138bfp@chr8:11449034..11449045, +
1.18e-44FFCP PHASE1:Mm9::chr19:20567168..20567179,+#_a43b82134e33031b0d8eb285bf6138bfp5@E030003E18Rik
1.66e-44FFCP PHASE1:Mm9::chr11:61392754..61392766,-#_0831cb23e364f3c8dd169bffe8846de5p@chr11:61392754..61392766, -
1.66e-44FFCP PHASE2:Mm9::chr11:61392754..61392766,-#_0831cb23e364f3c8dd169bffe8846de5p@chr11:61392754..61392766, -
1.91e-44FFCP PHASE1:Hg19::chr14:61929802..61929817,+#_f15e41ca30fa09c0b95eed08436fe039p35@PRKCH
1.91e-44FFCP PHASE2:Hg19::chrX:47895575..47895589,+#_f15e41ca30fa09c0b95eed08436fe039p@chrX:47895575..47895589, +
1.91e-44FFCP PHASE2:Hg19::chr14:61929802..61929817,+#_f15e41ca30fa09c0b95eed08436fe039p35@PRKCH
1.91e-44FFCP PHASE1:Hg19::chrX:47895575..47895589,+#_f15e41ca30fa09c0b95eed08436fe039p@chrX:47895575..47895589, +
3.27e-44FFCP PHASE1:Mm9::chr3:103792260..103792309,+#_9971ce53a8a796413ab9f0382fb41918p@chr3:103792260..103792309, +
3.27e-44FFCP PHASE2:Mm9::chr3:103792260..103792309,+#_9971ce53a8a796413ab9f0382fb41918p@chr3:103792260..103792309, +
6.0e-44FFCP PHASE2:Hg19::chr7:30792938..30792970,+#_fe49d18d2392998e35c9d2dea58c42a0p@chr7:30792938..30792970, +
6.0e-44FFCP PHASE1:Hg19::chr7:30792938..30792970,+#_fe49d18d2392998e35c9d2dea58c42a0p@chr7:30792938..30792970, +
8.97e-44FFCP PHASE1:Mm9::chr5:93362343..93362363,+#_91426db8078d66a625986eceb21ecfdep@chr5:93362343..93362363, +
8.97e-44FFCP PHASE2:Mm9::chr5:93362343..93362363,+#_91426db8078d66a625986eceb21ecfdep@chr5:93362343..93362363, +
2.45e-43FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_ac58c1eb62412624d2e421937af861cbp@chrX:160838683..160838694, +
2.45e-43FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_ac58c1eb62412624d2e421937af861cbp@chrX:160838683..160838694, +
1.7e-39FFCP PHASE2:Mm9::chr8:125956526..125956533,-#_af9d3fee4dbc2185c8138aead29aaf8fp@chr8:125956526..125956533, -
1.7e-39FFCP PHASE1:Mm9::chr8:125956526..125956533,-#_af9d3fee4dbc2185c8138aead29aaf8fp@chr8:125956526..125956533, -
2.66e-39FFCP PHASE2:Mm9::chr15:76984103..76984104,-#_55f8b7ec36adbf43817e485357da837ap18@Rbfox2
2.66e-39FFCP PHASE2:Mm9::chr8:125952865..125952872,-#_55f8b7ec36adbf43817e485357da837ap@chr8:125952865..125952872, -
2.66e-39FFCP PHASE1:Mm9::chr8:125952865..125952872,-#_55f8b7ec36adbf43817e485357da837ap@chr8:125952865..125952872, -
2.66e-39FFCP PHASE1:Mm9::chr15:76984103..76984104,-#_55f8b7ec36adbf43817e485357da837ap18@Rbfox2
4.15e-39FFCP PHASE1:Mm9::chr6:91202567..91202570,+#_631164ea73856aa0a38dbe3ce1ffae6ep@chr6:91202567..91202570, +
4.15e-39FFCP PHASE1:Mm9::chr7:117927007..117927010,+#_631164ea73856aa0a38dbe3ce1ffae6ep@chr7:117927007..117927010, +
4.15e-39FFCP PHASE2:Mm9::chr6:91202567..91202570,+#_631164ea73856aa0a38dbe3ce1ffae6ep@chr6:91202567..91202570, +
4.15e-39FFCP PHASE2:Mm9::chr7:117927007..117927010,+#_631164ea73856aa0a38dbe3ce1ffae6ep@chr7:117927007..117927010, +
1.17e-38FFCP PHASE1:Mm9::chr6:91184012..91184021,+#_92137fd01550161b5f36ca542fd56728p@chr6:91184012..91184021, +
1.17e-38FFCP PHASE2:Mm9::chr6:91184012..91184021,+#_92137fd01550161b5f36ca542fd56728p@chr6:91184012..91184021, +
1.56e-38FFCP PHASE1:Mm9::chr16:58465599..58465600,+#_513b586d4f42ab0bf4d58561732ecdf7p@chr16:58465599..58465600, +
1.56e-38FFCP PHASE2:Mm9::chr16:58465599..58465600,+#_513b586d4f42ab0bf4d58561732ecdf7p@chr16:58465599..58465600, +
2.64e-38FFCP PHASE1:Hg19::chr2:72375244..72375254,-#_d2245bebaed88b7b9be1408d478c4d4ep12@CYP26B1
2.64e-38FFCP PHASE2:Hg19::chr2:72375244..72375254,-#_d2245bebaed88b7b9be1408d478c4d4ep12@CYP26B1
2.79e-38FFCP PHASE1:Mm9::chr4:141154145..141154160,-#_8222c1e640f093bf9faeac82c842b4a9p6@Fblim1
2.79e-38FFCP PHASE2:Mm9::chr4:141154145..141154160,-#_8222c1e640f093bf9faeac82c842b4a9p6@Fblim1
3.73e-38FFCP PHASE1:Mm9::chr3:54920096..54920117,+#_ca3d835d7842a7ac8a580a99b45ac523p7@Spg20
3.73e-38FFCP PHASE2:Mm9::chr3:54920096..54920117,+#_ca3d835d7842a7ac8a580a99b45ac523p7@Spg20
6.64e-38FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_d477f5b3308cd44847c1c0285be49334p@chr12:105433069..105433075, -
6.64e-38FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_d477f5b3308cd44847c1c0285be49334p@chr12:105433069..105433075, -
8.86e-38FFCP PHASE2:Mm9::chr18:61220910..61220912,+#_929d1d9dad048d3af00d97f12ac33cfbp@chr18:61220910..61220912, +
8.86e-38FFCP PHASE1:Mm9::chr18:61220910..61220912,+#_929d1d9dad048d3af00d97f12ac33cfbp@chr18:61220910..61220912, +
8.86e-38FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_929d1d9dad048d3af00d97f12ac33cfbp@chrX:65748600..65748616, +
8.86e-38FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_929d1d9dad048d3af00d97f12ac33cfbp@chrX:65748600..65748616, +
3.67e-34FFCP PHASE2:Mm9::chr7:19425360..19425369,+#_b6d0f67823ada19cf878e1db264ce906p2@Mill2
3.67e-34FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_b6d0f67823ada19cf878e1db264ce906p@chr6:91222095..91222107, +
3.67e-34FFCP PHASE1:Mm9::chr7:19425360..19425369,+#_b6d0f67823ada19cf878e1db264ce906p2@Mill2
3.67e-34FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_b6d0f67823ada19cf878e1db264ce906p@chr6:91222095..91222107, +
3.67e-34FFCP PHASE1:Mm9::chr6:91183490..91183501,+#_b6d0f67823ada19cf878e1db264ce906p@chr6:91183490..91183501, +
3.67e-34FFCP PHASE2:Mm9::chr6:91183490..91183501,+#_b6d0f67823ada19cf878e1db264ce906p@chr6:91183490..91183501, +
4.27e-34FFCP PHASE1:Hg19::chr13:26584630..26584631,+#_65586287e4bbd8044f11de705b0cf304p@chr13:26584630..26584631, +
4.27e-34FFCP PHASE2:Hg19::chr5:41261566..41261575,-#_65586287e4bbd8044f11de705b0cf304p10@C6
4.27e-34FFCP PHASE1:Hg19::chr5:41261566..41261575,-#_65586287e4bbd8044f11de705b0cf304p10@C6
4.27e-34FFCP PHASE2:Hg19::chr20:43726947..43726954,-#_65586287e4bbd8044f11de705b0cf304p@chr20:43726947..43726954, -
4.27e-34FFCP PHASE2:Hg19::chr13:26584630..26584631,+#_65586287e4bbd8044f11de705b0cf304p@chr13:26584630..26584631, +
4.27e-34FFCP PHASE1:Hg19::chr20:43726947..43726954,-#_65586287e4bbd8044f11de705b0cf304p@chr20:43726947..43726954, -
5.96e-34FFCP PHASE2:Hg19::chr12:113448406..113448411,+#_fc33d24f794f59f1eaf280a9a559c101p14@OAS2
5.96e-34FFCP PHASE1:Hg19::chr2:42252409..42252416,-#_fc33d24f794f59f1eaf280a9a559c101p2@ENST00000451514
5.96e-34FFCP PHASE2:Hg19::chr21:46897193..46897196,+#_fc33d24f794f59f1eaf280a9a559c101p@chr21:46897193..46897196, +
5.96e-34FFCP PHASE1:Hg19::chr1:19522637..19522659,-#_fc33d24f794f59f1eaf280a9a559c101p@chr1:19522637..19522659, -
5.96e-34FFCP PHASE2:Hg19::chr2:138989393..138989399,+#_fc33d24f794f59f1eaf280a9a559c101p@chr2:138989393..138989399, +
5.96e-34FFCP PHASE2:Hg19::chr12:114798729..114798733,-#_fc33d24f794f59f1eaf280a9a559c101p@chr12:114798729..114798733, -
5.96e-34FFCP PHASE2:Hg19::chr16:89584495..89584539,+#_fc33d24f794f59f1eaf280a9a559c101p@chr16:89584495..89584539, +
5.96e-34FFCP PHASE1:Hg19::chr21:46897193..46897196,+#_fc33d24f794f59f1eaf280a9a559c101p@chr21:46897193..46897196, +

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