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Coexpression cluster:C50: Difference between revisions

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{{Coexpression_clusters
{
|full_id=C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma
 

Latest revision as of 10:18, 17 September 2013


Full id: C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma



Phase1 CAGE Peaks

Hg19::chr10:105250670..105250675,+p@chr10:105250670..105250675
+
Hg19::chr10:115252082..115252093,-p@chr10:115252082..115252093
-
Hg19::chr10:11927715..11927740,-p@chr10:11927715..11927740
-
Hg19::chr10:25351253..25351258,-p3@ENKUR
Hg19::chr10:33281363..33281383,-p14@ITGB1
Hg19::chr11:110250298..110250302,+p@chr11:110250298..110250302
+
Hg19::chr11:12696102..12696113,+p5@TEAD1
Hg19::chr11:2291814..2291825,-p2@ASCL2
Hg19::chr11:57154878..57154895,-p@chr11:57154878..57154895
-
Hg19::chr11:57154899..57154912,-p@chr11:57154899..57154912
-
Hg19::chr11:57156114..57156132,-p@chr11:57156114..57156132
-
Hg19::chr11:57156149..57156167,-p@chr11:57156149..57156167
-
Hg19::chr11:57156530..57156541,-p@chr11:57156530..57156541
-
Hg19::chr11:57156543..57156554,-p@chr11:57156543..57156554
-
Hg19::chr11:57156583..57156603,+p@chr11:57156583..57156603
+
Hg19::chr11:57156591..57156602,-p@chr11:57156591..57156602
-
Hg19::chr11:57156621..57156634,-p@chr11:57156621..57156634
-
Hg19::chr11:57156662..57156677,-p@chr11:57156662..57156677
-
Hg19::chr11:57156666..57156671,+p@chr11:57156666..57156671
+
Hg19::chr11:57156701..57156710,-p@chr11:57156701..57156710
-
Hg19::chr11:57156748..57156766,-p@chr11:57156748..57156766
-
Hg19::chr11:57157382..57157430,-p2@PRG2
Hg19::chr11:57158110..57158129,-p1@PRG2
Hg19::chr11:57160328..57160370,-p@chr11:57160328..57160370
-
Hg19::chr11:58959658..58959669,+p@chr11:58959658..58959669
+
Hg19::chr11:63376013..63376026,-p12@PLA2G16
Hg19::chr11:76366247..76366254,+p@chr11:76366247..76366254
+
Hg19::chr12:124870736..124870759,-p@chr12:124870736..124870759
-
Hg19::chr12:15081909..15081917,-p5@ERP27
Hg19::chr12:15081919..15081926,-p7@ERP27
Hg19::chr12:15104068..15104114,-p3@ARHGDIB
Hg19::chr12:15114627..15114631,-p10@ARHGDIB
Hg19::chr12:51718436..51718458,-p6@BIN2
Hg19::chr12:52558588..52558622,+p@chr12:52558588..52558622
+
Hg19::chr13:110652774..110652781,+p@chr13:110652774..110652781
+
Hg19::chr13:110652808..110652820,+p@chr13:110652808..110652820
+
Hg19::chr13:28959108..28959115,-p25@FLT1
Hg19::chr13:28959956..28959979,-p1@EF484674
Hg19::chr13:28961100..28961122,-p14@FLT1
Hg19::chr13:28961156..28961185,-p8@FLT1
Hg19::chr13:28961248..28961262,-p23@FLT1
Hg19::chr13:28961291..28961301,-p29@FLT1
Hg19::chr13:28961673..28961683,-p16@FLT1
Hg19::chr13:28961709..28961713,-p7@FLT1
Hg19::chr13:28961906..28961916,-p9@FLT1
Hg19::chr13:28961938..28961946,-p4@FLT1
Hg19::chr13:28962190..28962200,-p@chr13:28962190..28962200
-
Hg19::chr13:28963075..28963092,-p@chr13:28963075..28963092
-
Hg19::chr13:28963280..28963284,-p@chr13:28963280..28963284
-
Hg19::chr13:28963622..28963633,-p5@AF339822
Hg19::chr13:28963964..28963972,-p3@AF339822
Hg19::chr13:28963995..28964009,-p1@AF339822
Hg19::chr13:28964139..28964148,-p4@AF339822
Hg19::chr13:28964179..28964195,-p2@AF339822
Hg19::chr13:28971118..28971128,-p@chr13:28971118..28971128
-
Hg19::chr13:28971176..28971189,-p@chr13:28971176..28971189
-
Hg19::chr13:28971192..28971206,-p@chr13:28971192..28971206
-
Hg19::chr13:28979951..28979962,-p13@FLT1
Hg19::chr13:28979992..28980007,-p10@FLT1
Hg19::chr13:29001402..29001418,-p@chr13:29001402..29001418
-
Hg19::chr13:29001955..29001966,-p@chr13:29001955..29001966
-
Hg19::chr13:29001978..29001987,-p@chr13:29001978..29001987
-
Hg19::chr13:29004205..29004214,-p@chr13:29004205..29004214
-
Hg19::chr13:29004237..29004250,-p@chr13:29004237..29004250
-
Hg19::chr13:29008023..29008059,+p@chr13:29008023..29008059
+
Hg19::chr13:29008028..29008038,-p@chr13:29008028..29008038
-
Hg19::chr13:29008224..29008235,-p@chr13:29008224..29008235
-
Hg19::chr13:29008256..29008265,-p@chr13:29008256..29008265
-
Hg19::chr13:29008292..29008303,-p@chr13:29008292..29008303
-
Hg19::chr13:29012385..29012399,-p@chr13:29012385..29012399
-
Hg19::chr13:29012405..29012418,-p@chr13:29012405..29012418
-
Hg19::chr13:29041200..29041217,-p@chr13:29041200..29041217
-
Hg19::chr13:29041249..29041269,-p@chr13:29041249..29041269
-
Hg19::chr13:29069256..29069272,-p1@FLT1
Hg19::chr13:29069601..29069612,+p@chr13:29069601..29069612
+
Hg19::chr13:97831806..97831817,-p1@ENST00000453862
Hg19::chr14:31856457..31856471,-p5@HEATR5A
Hg19::chr14:34509180..34509193,+p1@ENST00000555922
Hg19::chr14:34509199..34509207,+p2@ENST00000555922
Hg19::chr14:34672932..34672937,-p@chr14:34672932..34672937
-
Hg19::chr14:34688978..34688987,-p@chr14:34688978..34688987
-
Hg19::chr14:77950741..77950750,-p10@ISM2
Hg19::chr14:77951114..77951128,-p9@ISM2
Hg19::chr14:77965151..77965165,-p1@ISM2
Hg19::chr14:77965317..77965338,-p2@ISM2
Hg19::chr14:77965643..77965654,-p8@ISM2
Hg19::chr14:88940266..88940280,-p11@PTPN21
Hg19::chr15:33406335..33406350,-p@chr15:33406335..33406350
-
Hg19::chr15:34338836..34338844,+p4@CHRM5
Hg19::chr15:72462384..72462389,-p@chr15:72462384..72462389
-
Hg19::chr15:72462556..72462566,-p@chr15:72462556..72462566
-
Hg19::chr15:74632534..74632543,-p@chr15:74632534..74632543
-
Hg19::chr15:74659978..74659993,-p1@CYP11A1
Hg19::chr16:11922644..11922651,-p3@BCAR4
Hg19::chr16:11922652..11922661,-p2@BCAR4
Hg19::chr16:11922665..11922694,-p1@BCAR4
Hg19::chr16:14468013..14468028,+p@chr16:14468013..14468028
+
Hg19::chr16:30123873..30123913,-p@chr16:30123873..30123913
-
Hg19::chr16:30124849..30124867,-p1@GDPD3
Hg19::chr16:55690161..55690189,+p3@SLC6A2
Hg19::chr16:55690205..55690212,+p7@SLC6A2
Hg19::chr16:66945145..66945152,-p@chr16:66945145..66945152
-
Hg19::chr16:66945221..66945237,-p@chr16:66945221..66945237
-
Hg19::chr16:67233436..67233454,+p4@ELMO3
Hg19::chr16:70747947..70747956,+p1@BC128395
Hg19::chr16:75410860..75410863,+p@chr16:75410860..75410863
+
Hg19::chr17:27373732..27373743,+p5@PIPOX
Hg19::chr17:42117687..42117722,-p@chr17:42117687..42117722
-
Hg19::chr17:65240602..65240639,-p@chr17:65240602..65240639
-
Hg19::chr17:67590125..67590147,+p@chr17:67590125..67590147
+
Hg19::chr17:68047446..68047478,+p1@uc002jim.2
Hg19::chr17:79910718..79910728,-p@chr17:79910718..79910728
-
Hg19::chr17:79914937..79914947,-p@chr17:79914937..79914947
-
Hg19::chr17:79917433..79917443,-p@chr17:79917433..79917443
-
Hg19::chr17:79918808..79918833,-p7@NOTUM
Hg19::chr17:79919053..79919070,-p1@NOTUM
Hg19::chr19:17423022..17423028,+p@chr19:17423022..17423028
+
Hg19::chr19:40037638..40037642,+p@chr19:40037638..40037642
+
Hg19::chr19:41838141..41838155,-p@chr19:41838141..41838155
-
Hg19::chr19:4210259..4210283,+p@chr19:4210259..4210283
+
Hg19::chr19:4229498..4229539,+p1@EBI3
Hg19::chr19:4231214..4231225,+p@chr19:4231214..4231225
+
Hg19::chr19:4231275..4231286,+p@chr19:4231275..4231286
+
Hg19::chr19:4233141..4233152,+p@chr19:4233141..4233152
+
Hg19::chr19:4234683..4234696,+p@chr19:4234683..4234696
+
Hg19::chr19:55014014..55014052,+p2@LAIR2
Hg19::chr19:6744539..6744568,+p4@TRIP10
Hg19::chr19:676385..676403,+p1@FSTL3
Hg19::chr19:676466..676489,+p5@FSTL3
Hg19::chr19:677885..677909,+p@chr19:677885..677909
+
Hg19::chr19:681723..681751,+p@chr19:681723..681751
+
Hg19::chr19:681807..681839,-p@chr19:681807..681839
-
Hg19::chr19:681941..681952,+p@chr19:681941..681952
+
Hg19::chr19:681988..682003,+p@chr19:681988..682003
+
Hg19::chr19:682017..682027,+p@chr19:682017..682027
+
Hg19::chr19:682037..682060,+p@chr19:682037..682060
+
Hg19::chr1:1009683..1009688,-p1@RNF223
Hg19::chr1:120049809..120049823,+p2@HSD3B1
Hg19::chr1:120056675..120056682,+p@chr1:120056675..120056682
+
Hg19::chr1:147232669..147232676,-p4@GJA5
Hg19::chr1:150522222..150522261,+p3@ADAMTSL4
Hg19::chr1:154999202..154999220,-p1@DCST2
Hg19::chr1:161059868..161059875,-p8@PVRL4
Hg19::chr1:164325901..164325906,+p2@HMGB3P6
Hg19::chr1:176432288..176432297,+p6@PAPPA2
Hg19::chr1:176432298..176432319,+p1@PAPPA2
Hg19::chr1:176432470..176432487,+p7@PAPPA2
Hg19::chr1:176524597..176524602,+p28@PAPPA2
Hg19::chr1:176524663..176524674,+p8@PAPPA2
Hg19::chr1:176525848..176525853,+p23@PAPPA2
Hg19::chr1:176668544..176668553,+p@chr1:176668544..176668553
+
Hg19::chr1:176708805..176708814,+p@chr1:176708805..176708814
+
Hg19::chr1:176734925..176734928,+p@chr1:176734925..176734928
+
Hg19::chr1:176750535..176750537,+p@chr1:176750535..176750537
+
Hg19::chr1:176760336..176760340,+p3@PAPPA2
Hg19::chr1:176760549..176760561,+p19@PAPPA2
Hg19::chr1:220863696..220863752,+p1@C1orf115
Hg19::chr1:233791439..233791444,+p7@KCNK1
Hg19::chr1:24927382..24927395,+p@chr1:24927382..24927395
+
Hg19::chr1:24927398..24927408,+p@chr1:24927398..24927408
+
Hg19::chr1:24927439..24927444,+p@chr1:24927439..24927444
+
Hg19::chr1:25070589..25070597,+p@chr1:25070589..25070597
+
Hg19::chr1:43205891..43205930,-p1@CLDN19
Hg19::chr1:43205948..43205957,-p2@CLDN19
Hg19::chr1:43426742..43426751,-p@chr1:43426742..43426751
-
Hg19::chr1:43987687..43987701,+p@chr1:43987687..43987701
+
Hg19::chr1:43987714..43987727,+p@chr1:43987714..43987727
+
Hg19::chr1:90420226..90420272,+p@chr1:90420226..90420272
+
Hg19::chr20:11677855..11677865,-p@chr20:11677855..11677865
-
Hg19::chr20:11850605..11850610,+p@chr20:11850605..11850610
+
Hg19::chr20:43585067..43585076,-p@chr20:43585067..43585076
-
Hg19::chr20:43585091..43585114,-p@chr20:43585091..43585114
-
Hg19::chr20:43585117..43585135,-p@chr20:43585117..43585135
-
Hg19::chr21:16196340..16196343,-p@chr21:16196340..16196343
-
Hg19::chr21:16254322..16254327,-p1@ENST00000418954
Hg19::chr21:16291032..16291044,-p@chr21:16291032..16291044
-
Hg19::chr22:32957467..32957470,+p@chr22:32957467..32957470
+
Hg19::chr22:33245454..33245472,+p@chr22:33245454..33245472
+
Hg19::chr22:33245473..33245491,+p@chr22:33245473..33245491
+
Hg19::chr22:33253998..33254009,+p@chr22:33253998..33254009
+
Hg19::chr22:33254010..33254022,+p@chr22:33254010..33254022
+
Hg19::chr22:33254028..33254041,+p@chr22:33254028..33254041
+
Hg19::chr22:33254044..33254070,+p@chr22:33254044..33254070
+
Hg19::chr22:33254077..33254098,+p@chr22:33254077..33254098
+
Hg19::chr22:33255285..33255302,+p9@TIMP3
Hg19::chr22:33255315..33255336,-p4@CU676956
Hg19::chr22:33255318..33255329,+p13@TIMP3
Hg19::chr22:33255360..33255398,+p2@TIMP3
Hg19::chr22:33255417..33255424,+p18@TIMP3
Hg19::chr22:33255499..33255507,+p15@TIMP3
Hg19::chr22:33255512..33255535,+p5@TIMP3
Hg19::chr22:33255539..33255550,+p8@TIMP3
Hg19::chr22:33255587..33255606,+p6@TIMP3
Hg19::chr22:33255620..33255635,+p10@TIMP3
Hg19::chr22:33255699..33255744,+p4@TIMP3
Hg19::chr22:33255792..33255814,-p3@CU676956
Hg19::chr22:33255889..33255896,+p16@TIMP3
Hg19::chr22:33255990..33256024,-p1@X77690
Hg19::chr22:33256175..33256186,+p@chr22:33256175..33256186
+
Hg19::chr22:33256291..33256330,-p1@ENST00000327661
Hg19::chr22:33256349..33256361,+p@chr22:33256349..33256361
+
Hg19::chr22:33256373..33256380,+p@chr22:33256373..33256380
+
Hg19::chr22:33256388..33256401,+p@chr22:33256388..33256401
+
Hg19::chr22:33256407..33256418,+p@chr22:33256407..33256418
+
Hg19::chr22:33256862..33256869,+p20@TIMP3
Hg19::chr22:33257335..33257355,+p17@TIMP3
Hg19::chr22:33257408..33257422,+p30@TIMP3
Hg19::chr22:33257584..33257646,+p11@TIMP3
Hg19::chr22:33257682..33257717,+p12@TIMP3
Hg19::chr22:33257722..33257777,+p7@TIMP3
Hg19::chr22:33257853..33257865,+p26@TIMP3
Hg19::chr22:33257962..33257975,+p19@TIMP3
Hg19::chr22:33258007..33258041,+p14@TIMP3
Hg19::chr22:33258451..33258463,+p@chr22:33258451..33258463
+
Hg19::chr22:33258469..33258485,+p@chr22:33258469..33258485
+
Hg19::chr22:37318050..37318074,+p4@CSF2RB
Hg19::chr22:37318082..37318109,+p3@CSF2RB
Hg19::chr22:37318624..37318635,+p6@CSF2RB
Hg19::chr22:37571089..37571097,-p3@IL2RB
Hg19::chr22:37952104..37952119,+p@chr22:37952104..37952119
+
Hg19::chr2:102618428..102618441,+p5@IL1R2
Hg19::chr2:163102619..163102638,+p@chr2:163102619..163102638
+
Hg19::chr2:163346809..163346851,+p@chr2:163346809..163346851
+
Hg19::chr2:165671613..165671621,-p@chr2:165671613..165671621
-
Hg19::chr2:16804236..16804248,-p9@FAM49A
Hg19::chr2:201616597..201616605,-p@chr2:201616597..201616605
-
Hg19::chr2:216257678..216257748,-p35@FN1
Hg19::chr2:216257795..216257824,-p54@FN1
Hg19::chr2:216257825..216257843,-p63@FN1
Hg19::chr2:216257849..216257907,-p39@FN1
Hg19::chr2:216257915..216257929,-p61@FN1
Hg19::chr2:216261934..216261947,-p@chr2:216261934..216261947
-
Hg19::chr2:216262040..216262049,-p@chr2:216262040..216262049
-
Hg19::chr2:216269355..216269365,-p@chr2:216269355..216269365
-
Hg19::chr2:216271209..216271220,-p@chr2:216271209..216271220
-
Hg19::chr2:216693832..216693839,-p@chr2:216693832..216693839
-
Hg19::chr2:219262948..219262967,+p6@CTDSP1
Hg19::chr2:220436945..220436970,+p2@INHA
Hg19::chr2:220436978..220436989,+p5@INHA
Hg19::chr2:220437007..220437020,+p3@INHA
Hg19::chr2:220437026..220437056,+p1@INHA
Hg19::chr2:232238892..232238901,+p@chr2:232238892..232238901
+
Hg19::chr2:25862142..25862153,-p19@DTNB
Hg19::chr2:25862154..25862172,-p14@DTNB
Hg19::chr2:46612891..46612907,+p10@EPAS1
Hg19::chr2:75796837..75796849,-p6@FAM176A
Hg19::chr2:86094764..86094796,-p9@ST3GAL5
Hg19::chr2:88913509..88913543,-p@chr2:88913509..88913543
-
Hg19::chr2:97584841..97584849,+p1@ENST00000500585
Hg19::chr2:99485806..99485815,-p9@C2orf55
Hg19::chr3:13028640..13028650,-p34@IQSEC1
Hg19::chr3:13028657..13028672,-p23@IQSEC1
Hg19::chr3:133667806..133667817,-p5@SLCO2A1
Hg19::chr3:133670133..133670144,-p@chr3:133670133..133670144
-
Hg19::chr3:134076482..134076499,-p@chr3:134076482..134076499
-
Hg19::chr3:154741971..154742004,+p11@MME
Hg19::chr3:154742006..154742014,+p26@MME
Hg19::chr3:16844153..16844164,+p7@PLCL2
Hg19::chr3:16844175..16844178,+p18@PLCL2
Hg19::chr3:172224282..172224303,-p@chr3:172224282..172224303
-
Hg19::chr3:172224384..172224396,-p@chr3:172224384..172224396
-
Hg19::chr3:172224576..172224593,-p@chr3:172224576..172224593
-
Hg19::chr3:172224641..172224657,-p@chr3:172224641..172224657
-
Hg19::chr3:172232775..172232786,-p@chr3:172232775..172232786
-
Hg19::chr3:172241213..172241228,-p1@TNFSF10
Hg19::chr3:172241250..172241274,-p2@TNFSF10
Hg19::chr3:190281229..190281270,+p9@IL1RAP
Hg19::chr3:194445234..194445270,+p@chr3:194445234..194445270
+
Hg19::chr3:39196049..39196062,-p5@CSRNP1
Hg19::chr3:42850917..42850927,+p4@CCBP2
Hg19::chr3:42850931..42850953,+p1@CCBP2
p2@KRBOX1
Hg19::chr3:42850959..42850986,+p2@CCBP2
p3@KRBOX1
Hg19::chr3:42907129..42907136,+p@chr3:42907129..42907136
+
Hg19::chr3:45596917..45596926,+p17@LIMD1
Hg19::chr3:45982401..45982426,+p3@CXCR6
Hg19::chr3:45982430..45982440,+p6@CXCR6
Hg19::chr3:45982445..45982458,+p5@CXCR6
Hg19::chr3:46069223..46069234,-p3@XCR1
Hg19::chr3:46468334..46468339,+p@chr3:46468334..46468339
+
Hg19::chr3:48591407..48591443,-p@chr3:48591407..48591443
-
Hg19::chr4:10616734..10616776,+p@chr4:10616734..10616776
+
Hg19::chr4:48906592..48906610,-p@chr4:48906592..48906610
-
Hg19::chr4:8560319..8560343,+p2@GPR78
Hg19::chr5:115297478..115297483,+p@chr5:115297478..115297483
+
Hg19::chr5:115297798..115297809,+p5@AQPEP
Hg19::chr5:115298145..115298156,+p2@AQPEP
Hg19::chr5:115298165..115298178,+p1@AQPEP
Hg19::chr5:115298231..115298242,+p3@AQPEP
Hg19::chr5:122179976..122179996,+p8@SNX24
Hg19::chr5:125695772..125695781,+p30@GRAMD3
Hg19::chr5:125695783..125695793,+p24@GRAMD3
Hg19::chr5:149492904..149492934,-p3@CSF1R
Hg19::chr5:149492944..149492966,-p4@CSF1R
Hg19::chr5:149492967..149492997,-p5@CSF1R
Hg19::chr5:24397650..24397678,-p@chr5:24397650..24397678
-
Hg19::chr5:73981050..73981064,+p1@HEXB
Hg19::chr5:74011328..74011343,+p6@HEXB
Hg19::chr5:86525851..86525879,-p@chr5:86525851..86525879
-
Hg19::chr6:112620296..112620309,-p@chr6:112620296..112620309
-
Hg19::chr6:125367597..125367609,+p17@RNF217
Hg19::chr6:13486369..13486384,-p4@GFOD1
Hg19::chr6:140176025..140176040,+p1@ENST00000431609
Hg19::chr6:169498853..169498877,+p@chr6:169498853..169498877
+
Hg19::chr6:29795595..29795607,+p1@HLA-G
Hg19::chr6:3785341..3785349,+p@chr6:3785341..3785349
+
Hg19::chr6:4584071..4584084,-p@chr6:4584071..4584084
-
Hg19::chr6:4734722..4734736,+p@chr6:4734722..4734736
+
Hg19::chr6:52992823..52992825,-p@chr6:52992823..52992825
-
Hg19::chr6:53013605..53013616,-p2@GCM1
Hg19::chr6:53013620..53013644,-p1@GCM1
Hg19::chr7:1040144..1040153,+p@chr7:1040144..1040153
+
Hg19::chr7:107770794..107770812,-p1@LAMB4
Hg19::chr7:1105364..1105372,+p@chr7:1105364..1105372
+
Hg19::chr7:134005080..134005095,-p@chr7:134005080..134005095
-
Hg19::chr7:150549595..150549614,+p1@ABP1
Hg19::chr7:150553527..150553540,+p10@ABP1
Hg19::chr7:150553574..150553583,+p19@ABP1
Hg19::chr7:150553614..150553634,+p2@ABP1
Hg19::chr7:150553643..150553665,+p4@ABP1
Hg19::chr7:150553676..150553686,+p12@ABP1
Hg19::chr7:150553711..150553733,+p5@ABP1
Hg19::chr7:150553996..150554012,+p7@ABP1
Hg19::chr7:150554126..150554136,+p@chr7:150554126..150554136
+
Hg19::chr7:150554422..150554432,+p@chr7:150554422..150554432
+
Hg19::chr7:150554495..150554504,+p1@AF218035
Hg19::chr7:150554537..150554542,+p24@ABP1
Hg19::chr7:150554684..150554693,+p9@ABP1
Hg19::chr7:150554784..150554792,+p13@ABP1
Hg19::chr7:150554839..150554849,+p11@ABP1
Hg19::chr7:150554885..150554903,+p8@ABP1
Hg19::chr7:150554953..150554959,+p18@ABP1
Hg19::chr7:150554973..150554993,+p3@ABP1
Hg19::chr7:150555015..150555020,+p25@ABP1
Hg19::chr7:150555034..150555046,+p6@ABP1
Hg19::chr7:150555049..150555056,+p15@ABP1
Hg19::chr7:150557611..150557623,+p@chr7:150557611..150557623
+
Hg19::chr7:150558050..150558070,+p@chr7:150558050..150558070
+
Hg19::chr7:154249793..154249797,-p@chr7:154249793..154249797
-
Hg19::chr7:16700806..16700858,+p2@BZW2
Hg19::chr7:46073181..46073190,+p@chr7:46073181..46073190
+
Hg19::chr7:47596951..47596970,-p@chr7:47596951..47596970
-
Hg19::chr7:55256621..55256633,-p1@ENST00000442411
p1@uc003tqo.2
Hg19::chr8:19936775..19936791,+p2@ENST00000519197
Hg19::chr8:24049607..24049611,+p@chr8:24049607..24049611
+
Hg19::chr9:101068822..101068846,-p@chr9:101068822..101068846
-
Hg19::chr9:118997516..118997525,+p@chr9:118997516..118997525
+
Hg19::chr9:139944951..139944965,-p@chr9:139944951..139944965
-
Hg19::chr9:27421682..27421705,-p@chr9:27421682..27421705
-
Hg19::chrX:102929694..102929702,-p@chrX:102929694..102929702
-
Hg19::chrX:129185630..129185637,+p5@BCORL1
Hg19::chrX:135436550..135436556,-p@chrX:135436550..135436556
-
Hg19::chrX:152939797..152939823,-p5@PNCK
Hg19::chrX:49593853..49593872,+p3@PAGE4
Hg19::chrX:52099102..52099111,+p@chrX:52099102..52099111
+
Hg19::chrX:52897107..52897121,-p1@XAGE3
Hg19::chrX:52897140..52897156,-p2@XAGE3
Hg19::chrX:56057971..56057978,-p@chrX:56057971..56057978
-
Hg19::chrX:68304335..68304342,-p@chrX:68304335..68304342
-
Hg19::chrX:70316005..70316034,+p2@FOXO4
Hg19::chrX:70316072..70316085,+p4@FOXO4
Hg19::chrX:70316101..70316112,+p5@FOXO4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
3.29024809202456e-082.08272704225154e-059265Cytokine-cytokine receptor interaction (KEGG):04060
0.0002041136758082590.0323009891966575204Endocytosis (KEGG):04144
0.0004419335342052710.0466239878586561212IL-1 Signaling Pathway (Wikipathways):WP195
0.0001887692472021790.03230098919665728Glucocorticoid & Mineralcorticoid Metabolism (Wikipathways):WP237
0.0001316822779014840.032300989196657498EGFR1 down reg. targets (Netpath):NetPath_4
0.0002715427381020930.0343773106437255217IL-4 up reg. targets (Netpath):NetPath_16



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019955cytokine binding1.49272708389083e-08
GO:0005886plasma membrane7.61070928536705e-07
GO:0005887integral to plasma membrane7.61070928536705e-07
GO:0031226intrinsic to plasma membrane7.61070928536705e-07
GO:0044459plasma membrane part8.62302001552363e-07
GO:0019965interleukin binding1.8985367683814e-06
GO:0007154cell communication1.8985367683814e-06
GO:0032502developmental process5.30326663034162e-06
GO:0032501multicellular organismal process1.94977006594127e-05
GO:0004896hematopoietin/interferon-class (D200-domain) cytokine receptor activity1.94977006594127e-05
GO:0005515protein binding2.18122820349288e-05
GO:0004907interleukin receptor activity3.92941151866108e-05
GO:0004871signal transducer activity4.97688454155484e-05
GO:0060089molecular transducer activity4.97688454155484e-05
GO:0007165signal transduction0.000669259796048789
GO:0016021integral to membrane0.00102460498252477
GO:0017106activin inhibitor activity0.00102460498252477
GO:0031224intrinsic to membrane0.00102460498252477
GO:0007275multicellular organismal development0.00102460498252477
GO:0007167enzyme linked receptor protein signaling pathway0.00104650539691135
GO:0019838growth factor binding0.00109245987129696
GO:0048869cellular developmental process0.00123243246071054
GO:0030154cell differentiation0.00123243246071054
GO:0006702androgen biosynthetic process0.00130184789904941
GO:0007166cell surface receptor linked signal transduction0.00147011725200007
GO:0001637G-protein chemoattractant receptor activity0.00147011725200007
GO:0004950chemokine receptor activity0.00147011725200007
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway0.0015099549151185
GO:0019956chemokine binding0.0015099549151185
GO:0019098reproductive behavior0.0015099549151185
GO:0007617mating behavior0.0015099549151185
GO:0001573ganglioside metabolic process0.00259865329927433
GO:0004908interleukin-1 receptor activity0.00259865329927433
GO:0004888transmembrane receptor activity0.00259865329927433
GO:0019966interleukin-1 binding0.00399237479762478
GO:0044425membrane part0.00399580670302256
GO:0008209androgen metabolic process0.00448878922135019
GO:0016494C-X-C chemokine receptor activity0.00448878922135019
GO:0009605response to external stimulus0.0044964507567263
GO:0004872receptor activity0.0044964507567263
GO:0006700C21-steroid hormone biosynthetic process0.00454302260027451
GO:0045072regulation of interferon-gamma biosynthetic process0.00454302260027451
GO:0051705behavioral interaction between organisms0.00454302260027451
GO:0019958C-X-C chemokine binding0.00454302260027451
GO:0007618mating0.00454302260027451
GO:0042095interferon-gamma biosynthetic process0.00521665560383364
GO:0001568blood vessel development0.00521665560383364
GO:0001944vasculature development0.00532862574840074
GO:0022414reproductive process0.00532862574840074
GO:0044421extracellular region part0.00585547116203293
GO:0016020membrane0.00711638043454994
GO:0008201heparin binding0.00711638043454994
GO:0008207C21-steroid hormone metabolic process0.00789940474589652
GO:0032609interferon-gamma production0.00871149685800637
GO:0006687glycosphingolipid metabolic process0.00954755989468845
GO:0042802identical protein binding0.0104102169548371
GO:0006952defense response0.0134330951685002
GO:0048731system development0.0134862223130983
GO:0019957C-C chemokine binding0.0140390320707872
GO:0016493C-C chemokine receptor activity0.0140390320707872
GO:0002376immune system process0.0174946863345362
GO:0005539glycosaminoglycan binding0.0174946863345362
GO:0048856anatomical structure development0.0189458534462492
GO:0007267cell-cell signaling0.0189458534462492
GO:0006664glycolipid metabolic process0.0189458534462492
GO:0030247polysaccharide binding0.0191438607355616
GO:0006672ceramide metabolic process0.0205506931634331
GO:0001871pattern binding0.0205506931634331
GO:0006955immune response0.0205506931634331
GO:0005333norepinephrine transmembrane transporter activity0.0205506931634331
GO:0008115sarcosine oxidase activity0.0205506931634331
GO:0007619courtship behavior0.0205506931634331
GO:0060018astrocyte fate commitment0.0205506931634331
GO:0005334norephinephrine:sodium symporter activity0.0205506931634331
GO:0008386cholesterol monooxygenase (side-chain-cleaving) activity0.0205506931634331
GO:0030526granulocyte macrophage colony-stimulating factor receptor complex0.0205506931634331
GO:0015874norepinephrine transport0.0205506931634331
GO:0008049male courtship behavior0.0205506931634331
GO:0004513neolactotetraosylceramide alpha-2,3-sialyltransferase activity0.0205506931634331
GO:0050031L-pipecolate oxidase activity0.0205506931634331
GO:0060179male mating behavior0.0205506931634331
GO:0001525angiogenesis0.0208753141373089
GO:0046519sphingoid metabolic process0.0215838713303297
GO:0044464cell part0.0217108781624752
GO:0006954inflammatory response0.0241089520879431
GO:0008081phosphoric diester hydrolase activity0.0241089520879431
GO:0007610behavior0.0244194813017395
GO:0007399nervous system development0.0244194813017395
GO:0048514blood vessel morphogenesis0.0277675870270528
GO:0008528peptide receptor activity, G-protein coupled0.0277675870270528
GO:0001653peptide receptor activity0.0277675870270528
GO:0008283cell proliferation0.0280524718892925
GO:0042446hormone biosynthetic process0.0280524718892925
GO:0019221cytokine and chemokine mediated signaling pathway0.0280524718892925
GO:0048646anatomical structure formation0.0280524718892925
GO:0004435phosphoinositide phospholipase C activity0.0280524718892925
GO:0004434inositol or phosphatidylinositol phosphodiesterase activity0.0280524718892925
GO:0005615extracellular space0.0280524718892925
GO:0043511inhibin complex0.0280524718892925
GO:0043512inhibin A complex0.0280524718892925
GO:0001574ganglioside biosynthetic process0.0280524718892925
GO:0004910interleukin-1, Type II, blocking receptor activity0.0280524718892925
GO:0033057reproductive behavior in a multicellular organism0.0280524718892925
GO:0045077negative regulation of interferon-gamma biosynthetic process0.0280524718892925
GO:0019968interleukin-1, Type II, blocking binding0.0280524718892925
GO:0045650negative regulation of macrophage differentiation0.0280524718892925
GO:0004912interleukin-3 receptor activity0.0280524718892925
GO:0045523interleukin-27 receptor binding0.0280524718892925
GO:0005011macrophage colony stimulating factor receptor activity0.0280524718892925
GO:0016647oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor0.0280524718892925
GO:0009914hormone transport0.0280524718892925
GO:0060014granulosa cell differentiation0.0280524718892925
GO:0047291lactosylceramide alpha-2,3-sialyltransferase activity0.0280524718892925
GO:0019978interleukin-3 binding0.0280524718892925
GO:0046653tetrahydrofolate metabolic process0.0280524718892925
GO:0009313oligosaccharide catabolic process0.0280524718892925
GO:0007197muscarinic acetylcholine receptor, adenylate cyclase inhibiting pathway0.0280524718892925
GO:0051704multi-organism process0.0280524718892925
GO:0008610lipid biosynthetic process0.0280524718892925
GO:0042578phosphoric ester hydrolase activity0.0352271326292445
GO:0007626locomotory behavior0.0361189572560658
GO:0006417regulation of translation0.0361189572560658
GO:0004629phospholipase C activity0.0361189572560658
GO:0019976interleukin-2 binding0.0361189572560658
GO:0046640regulation of alpha-beta T cell proliferation0.0361189572560658
GO:0004911interleukin-2 receptor activity0.0361189572560658
GO:0051148negative regulation of muscle cell differentiation0.0361189572560658
GO:0045578negative regulation of B cell differentiation0.0361189572560658
GO:0004769steroid delta-isomerase activity0.0361189572560658
GO:0032278positive regulation of gonadotropin secretion0.0361189572560658
GO:0046881positive regulation of follicle-stimulating hormone secretion0.0361189572560658
GO:0004914interleukin-5 receptor activity0.0361189572560658
GO:0019980interleukin-5 binding0.0361189572560658
GO:0051150regulation of smooth muscle cell differentiation0.0361189572560658
GO:0030061mitochondrial crista0.0361189572560658
GO:0046641positive regulation of alpha-beta T cell proliferation0.0361189572560658
GO:0051151negative regulation of smooth muscle cell differentiation0.0361189572560658
GO:0046635positive regulation of alpha-beta T cell activation0.0361189572560658
GO:0042035regulation of cytokine biosynthetic process0.0371790017174161
GO:0048513organ development0.0375810492059555
GO:0048609reproductive process in a multicellular organism0.0375810492059555
GO:0032504multicellular organism reproduction0.0375810492059555
GO:0006928cell motility0.0378812828189273
GO:0051674localization of cell0.0378812828189273
GO:0031326regulation of cellular biosynthetic process0.0395216162600166
GO:0045596negative regulation of cell differentiation0.0395216162600166
GO:0042089cytokine biosynthetic process0.0395216162600166
GO:0042277peptide binding0.0395216162600166
GO:0042107cytokine metabolic process0.0395216162600166
GO:0006665sphingolipid metabolic process0.0395216162600166
GO:0001501skeletal development0.0395216162600166
GO:0007341penetration of zona pellucida0.0395216162600166
GO:0046882negative regulation of follicle-stimulating hormone secretion0.0395216162600166
GO:0004563beta-N-acetylhexosaminidase activity0.0395216162600166
GO:0045620negative regulation of lymphocyte differentiation0.0395216162600166
GO:0015872dopamine transport0.0395216162600166
GO:0046887positive regulation of hormone secretion0.0395216162600166
GO:0032277negative regulation of gonadotropin secretion0.0395216162600166
GO:0046686response to cadmium ion0.0395216162600166
GO:0032276regulation of gonadotropin secretion0.0395216162600166
GO:0046880regulation of follicle-stimulating hormone secretion0.0395216162600166
GO:0046633alpha-beta T cell proliferation0.0395216162600166
GO:0042541hemoglobin biosynthetic process0.0395216162600166
GO:0030868smooth endoplasmic reticulum membrane0.0395216162600166
GO:0046634regulation of alpha-beta T cell activation0.0395216162600166
GO:0006689ganglioside catabolic process0.0395216162600166
GO:0002020protease binding0.0395216162600166
GO:0051147regulation of muscle cell differentiation0.0395216162600166
GO:0009889regulation of biosynthetic process0.0432103641869052
GO:0006968cellular defense response0.0432572368752746
GO:0006950response to stress0.0441881006096219
GO:0009611response to wounding0.0446582024972014
GO:0030054cell junction0.0450637409087457
GO:0051249regulation of lymphocyte activation0.0450637409087457
GO:0035035histone acetyltransferase binding0.0450637409087457
GO:0008504monoamine transmembrane transporter activity0.0450637409087457
GO:0032274gonadotropin secretion0.0450637409087457
GO:0046884follicle-stimulating hormone secretion0.0450637409087457
GO:0048038quinone binding0.0450637409087457
GO:0042787protein ubiquitination during ubiquitin-dependent protein catabolic process0.0450637409087457
GO:0046479glycosphingolipid catabolic process0.0450637409087457
GO:0048265response to pain0.0450637409087457
GO:0045649regulation of macrophage differentiation0.0450637409087457
GO:0020027hemoglobin metabolic process0.0450637409087457
GO:0051093negative regulation of developmental process0.0452260905183779
GO:0048522positive regulation of cellular process0.0457252457367973
GO:0006836neurotransmitter transport0.0458636190680978
GO:0022610biological adhesion0.0463177294120716
GO:0007155cell adhesion0.0463177294120716
GO:0016477cell migration0.0466077736484723
GO:0050865regulation of cell activation0.0469535460708043
GO:0007417central nervous system development0.0469535460708043
GO:0009790embryonic development0.0469535460708043



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
chorionic membrane mesenchymal stem cell4.06e-853
extraembryonic cell2.17e-2419
amnion mesenchymal stem cell5.38e-075
Uber Anatomy
Ontology termp-valuen
acellular anatomical structure4.06e-853
egg chorion4.06e-853
chorion8.06e-657
extraembryonic membrane1.12e-5014
membranous layer1.12e-5014
extraembryonic structure8.12e-3024
organ component layer4.13e-1166
placenta2.11e-084
allantois2.11e-084


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.13.66669e-06
MA0004.10.0374032
MA0006.13.18941e-07
MA0007.10.179886
MA0009.11.79808
MA0014.14.14564e-13
MA0017.10.444748
MA0019.10.96711
MA0024.10.000233995
MA0025.11.56201
MA0027.10.905549
MA0028.18.16038e-05
MA0029.10.369903
MA0030.10.339485
MA0031.10.0298935
MA0038.10.0639933
MA0040.10.150161
MA0041.10.24134
MA0042.10.914914
MA0043.10.28344
MA0046.10.261779
MA0048.10.000758335
MA0050.12.04734
MA0051.10.384721
MA0052.10.259604
MA0055.10.0274942
MA0056.10
MA0057.10.0503819
MA0058.10.00712882
MA0059.10.0312974
MA0060.12.2789e-07
MA0061.10.211374
MA0063.10
MA0066.11.16613
MA0067.10.0304603
MA0068.10.376658
MA0069.12.04671
MA0070.10.764053
MA0071.10.683378
MA0072.10.535577
MA0073.17.85927e-15
MA0074.10.624012
MA0076.14.63007e-05
MA0077.10.510437
MA0078.10.758764
MA0081.10.53997
MA0083.10.297857
MA0084.10.287505
MA0087.10.222073
MA0088.10.0839795
MA0089.10
MA0090.12.45071
MA0091.11.07595
MA0092.11.89563
MA0093.10.0102383
MA0095.10
MA0098.10
MA0100.10.186069
MA0101.10.0185002
MA0103.11.87077
MA0105.10.0735361
MA0106.10.0752115
MA0107.10.183045
MA0108.20.291104
MA0109.10
MA0111.10.388968
MA0113.10.874333
MA0114.11.1745
MA0115.10.393338
MA0116.12.28185
MA0117.10.111898
MA0119.10.505037
MA0122.10.423358
MA0124.10.160116
MA0125.10.196896
MA0130.10
MA0131.10.0073462
MA0132.10
MA0133.10
MA0135.10.043845
MA0136.10.0231041
MA0139.10.0305722
MA0140.12.00128
MA0141.10.283221
MA0142.10.222994
MA0143.10.705199
MA0144.13.05519
MA0145.10.0989746
MA0146.14.96205e-06
MA0147.10.00138199
MA0148.10.0394829
MA0149.10.736629
MA0062.23.97931e-09
MA0035.22.50261
MA0039.29.25758e-09
MA0138.21.16029
MA0002.20.247475
MA0137.21.17234
MA0104.27.63779e-05
MA0047.20.0180321
MA0112.20.310583
MA0065.20.162858
MA0150.10.35969
MA0151.10
MA0152.12.35181
MA0153.10.320511
MA0154.10.87998
MA0155.10.192295
MA0156.10.000689299
MA0157.10.255155
MA0158.10
MA0159.10.541596
MA0160.10.794127
MA0161.10
MA0162.11.44649e-16
MA0163.16.46775e-06
MA0164.10.618508
MA0080.20.175092
MA0018.20.363366
MA0099.20.713082
MA0079.20
MA0102.20.0996441
MA0258.10.590258
MA0259.10.0329008
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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