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{{UBERON
{{UBERON
|id=UBERON:0000163
|alt_id=
|name=embryonic cloaca
|namespace=
|def="Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
|xref=EHDAA2:0000256;;EHDAA:4895;;EMAPA:27573;;EMAPA:27638
|is_a=UBERON:0000162;;UBERON:0002050
|synonym="cloaca" RELATED SENSU []
|comment=compare UBERON:0000162 cloaca
|comment=compare UBERON:0000162 cloaca
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003064
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000163
|is_a=UBERON:0000162 ;;UBERON:0002050 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=embryonic cloaca
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0001008;;UBERON:0012361
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cloaca" RELATED SENSU []
|union_of=
|xref=EHDAA2:0000256;;EHDAA:4895;;EMAPA:27573;;EMAPA:27638
}}
}}

Latest revision as of 17:07, 12 September 2014

Name:embryonic cloaca
Namespace:FANTOM
Definition:"Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
Xrefs:
links:

EHDAA2:0000256
EHDAA:4895
EMAPA:27573

EMAPA:27638
Synonyms: "cloaca" RELATED SENSU []
Comments:compare UBERON:0000162 cloaca

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000162(cloaca),UBERON:0002050(embryonic structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0003064(intermediate mesoderm)
part_of:UBERON:0000922(embryo),UBERON:0001008(renal system),UBERON:0012361(internal anal region)



Children

part of:UBERON:0000164 (primitive urogenital sinus),UBERON:0009846 (embryonic cloacal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000163 (embryonic cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.58e-44FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_e316cf67cdea70cfd5faed19ab5c809ap@chr1:132699659..132699668, +
4.58e-44FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_e316cf67cdea70cfd5faed19ab5c809ap@chr1:132699659..132699668, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_e3e0ddc85fd10543e181f235533b6410p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_e3e0ddc85fd10543e181f235533b6410p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_e3e0ddc85fd10543e181f235533b6410p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_e3e0ddc85fd10543e181f235533b6410p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425983..96425992, +
2.66e-39FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_074dff01ee6bc89ae62c73e7e0bd01b3p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_074dff01ee6bc89ae62c73e7e0bd01b3p4@Fam115e
2.66e-39FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_074dff01ee6bc89ae62c73e7e0bd01b3p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_074dff01ee6bc89ae62c73e7e0bd01b3p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_074dff01ee6bc89ae62c73e7e0bd01b3p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_074dff01ee6bc89ae62c73e7e0bd01b3p4@Fam115e
2.66e-39FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:36337031..36337049, -
2.02e-32FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567075..91567084, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567075..91567084, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567053..91567066, +
4.03e-30FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_6ff33442481e73ce0132f7e10c0ff600p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_6ff33442481e73ce0132f7e10c0ff600p1@Msmb
4.03e-30FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_6ff33442481e73ce0132f7e10c0ff600p3@Upk1a
4.03e-30FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_6ff33442481e73ce0132f7e10c0ff600p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_6ff33442481e73ce0132f7e10c0ff600p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_6ff33442481e73ce0132f7e10c0ff600p3@Upk1a
4.03e-30FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_6ff33442481e73ce0132f7e10c0ff600p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_6ff33442481e73ce0132f7e10c0ff600p1@Msmb
5.61e-30FFCP PHASE2:Mm9::chr2:137020090..137020093,+#_5ee69073d950a70efac9795692a1081bp@chr2:137020090..137020093, +
5.61e-30FFCP PHASE2:Mm9::chr2:36098306..36098309,+#_5ee69073d950a70efac9795692a1081bp5@Ptgs1
5.61e-30FFCP PHASE1:Mm9::chr7:55008002..55008008,-#_5ee69073d950a70efac9795692a1081bp@chr7:55008002..55008008, -
5.61e-30FFCP PHASE2:Mm9::chr9:7867982..7867988,-#_5ee69073d950a70efac9795692a1081bp@chr9:7867982..7867988, -
5.61e-30FFCP PHASE1:Mm9::chr1:37769602..37769611,-#_5ee69073d950a70efac9795692a1081bp@chr1:37769602..37769611, -
5.61e-30FFCP PHASE1:Mm9::chr12:93026806..93026816,-#_5ee69073d950a70efac9795692a1081bp12@Ston2
5.61e-30FFCP PHASE2:Mm9::chr6:42535901..42535907,-#_5ee69073d950a70efac9795692a1081bp@chr6:42535901..42535907, -
5.61e-30FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_5ee69073d950a70efac9795692a1081bp@chr14:68331267..68331286, -
5.61e-30FFCP PHASE2:Mm9::chr6:134172953..134172958,+#_5ee69073d950a70efac9795692a1081bp@chr6:134172953..134172958, +
5.61e-30FFCP PHASE1:Mm9::chr6:42551847..42551862,-#_5ee69073d950a70efac9795692a1081bp@chr6:42551847..42551862, -
5.61e-30FFCP PHASE2:Mm9::chr1:73048139..73048141,+#_5ee69073d950a70efac9795692a1081bp@chr1:73048139..73048141, +
5.61e-30FFCP PHASE2:Mm9::chr6:42547300..42547314,-#_5ee69073d950a70efac9795692a1081bp7@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr9:122970758..122970759,+#_5ee69073d950a70efac9795692a1081bp@chr9:122970758..122970759, +
5.61e-30FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_5ee69073d950a70efac9795692a1081bp@chr11:89595040..89595050, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535901..42535907,-#_5ee69073d950a70efac9795692a1081bp@chr6:42535901..42535907, -
5.61e-30FFCP PHASE2:Mm9::chr6:22342065..22342073,-#_5ee69073d950a70efac9795692a1081bp@chr6:22342065..22342073, -
5.61e-30FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_5ee69073d950a70efac9795692a1081bp@chr14:29722238..29722242, -
5.61e-30FFCP PHASE2:Mm9::chr7:55008002..55008008,-#_5ee69073d950a70efac9795692a1081bp@chr7:55008002..55008008, -
5.61e-30FFCP PHASE2:Mm9::chr11:57320631..57320636,-#_5ee69073d950a70efac9795692a1081bp5@Fam114a2
5.61e-30FFCP PHASE1:Mm9::chr5:86802562..86802592,-#_5ee69073d950a70efac9795692a1081bp6@Tmprss11d
5.61e-30FFCP PHASE2:Mm9::chr10:61188929..61188936,+#_5ee69073d950a70efac9795692a1081bp@chr10:61188929..61188936, +
5.61e-30FFCP PHASE1:Mm9::chr3:95514619..95514622,-#_5ee69073d950a70efac9795692a1081bp@chr3:95514619..95514622, -
5.61e-30FFCP PHASE1:Mm9::chr15:101506878..101506897,-#_5ee69073d950a70efac9795692a1081bp@chr15:101506878..101506897, -
5.61e-30FFCP PHASE2:Mm9::chr6:57789909..57789916,-#_5ee69073d950a70efac9795692a1081bp@chr6:57789909..57789916, -
5.61e-30FFCP PHASE2:Mm9::chr6:42548119..42548136,-#_5ee69073d950a70efac9795692a1081bp12@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr15:101506516..101506534,-#_5ee69073d950a70efac9795692a1081bp@chr15:101506516..101506534, -
5.61e-30FFCP PHASE1:Mm9::chr7:123747566..123747567,+#_5ee69073d950a70efac9795692a1081bp@chr7:123747566..123747567, +
5.61e-30FFCP PHASE1:Mm9::chr5:33251992..33251995,+#_5ee69073d950a70efac9795692a1081bp@chr5:33251992..33251995, +
5.61e-30FFCP PHASE1:Mm9::chr18:64859665..64859669,+#_5ee69073d950a70efac9795692a1081bp@chr18:64859665..64859669, +
5.61e-30FFCP PHASE1:Mm9::chr16:20186645..20186650,+#_5ee69073d950a70efac9795692a1081bp@chr16:20186645..20186650, +
5.61e-30FFCP PHASE2:Mm9::chr6:42536009..42536044,+#_5ee69073d950a70efac9795692a1081bp@chr6:42536009..42536044, +
5.61e-30FFCP PHASE1:Mm9::chr9:122970904..122970907,-#_5ee69073d950a70efac9795692a1081bp@chr9:122970904..122970907, -
5.61e-30FFCP PHASE2:Mm9::chr11:100108943..100108977,-#_5ee69073d950a70efac9795692a1081bp@chr11:100108943..100108977, -
5.61e-30FFCP PHASE1:Mm9::chr6:42536009..42536044,+#_5ee69073d950a70efac9795692a1081bp@chr6:42536009..42536044, +
5.61e-30FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_5ee69073d950a70efac9795692a1081bp@chr12:80992302..80992309, +
5.61e-30FFCP PHASE2:Mm9::chr4:122366201..122366206,-#_5ee69073d950a70efac9795692a1081bp@chr4:122366201..122366206, -
5.61e-30FFCP PHASE2:Mm9::chr6:42535739..42535752,-#_5ee69073d950a70efac9795692a1081bp@chr6:42535739..42535752, -
5.61e-30FFCP PHASE2:Mm9::chr9:36300946..36300953,-#_5ee69073d950a70efac9795692a1081bp@chr9:36300946..36300953, -
5.61e-30FFCP PHASE1:Mm9::chr6:42547830..42547837,-#_5ee69073d950a70efac9795692a1081bp8@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr1:72981474..72981498,+#_5ee69073d950a70efac9795692a1081bp@chr1:72981474..72981498, +
5.61e-30FFCP PHASE2:Mm9::chr6:42543450..42543455,-#_5ee69073d950a70efac9795692a1081bp@chr6:42543450..42543455, -
5.61e-30FFCP PHASE2:Mm9::chr11:100065595..100065616,-#_5ee69073d950a70efac9795692a1081bp@chr11:100065595..100065616, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535739..42535752,-#_5ee69073d950a70efac9795692a1081bp@chr6:42535739..42535752, -
5.61e-30FFCP PHASE1:Mm9::chr6:42539787..42539797,-#_5ee69073d950a70efac9795692a1081bp@chr6:42539787..42539797, -
5.61e-30FFCP PHASE2:Mm9::chr16:20186645..20186650,+#_5ee69073d950a70efac9795692a1081bp@chr16:20186645..20186650, +
5.61e-30FFCP PHASE1:Mm9::chrX:137642090..137642093,-#_5ee69073d950a70efac9795692a1081bp8@Col4a6
5.61e-30FFCP PHASE1:Mm9::chr6:42547375..42547383,-#_5ee69073d950a70efac9795692a1081bp10@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr6:42539787..42539797,-#_5ee69073d950a70efac9795692a1081bp@chr6:42539787..42539797, -
5.61e-30FFCP PHASE2:Mm9::chr9:74005044..74005065,+#_5ee69073d950a70efac9795692a1081bp@chr9:74005044..74005065, +
5.61e-30FFCP PHASE1:Mm9::chr6:54242736..54242738,-#_5ee69073d950a70efac9795692a1081bp@chr6:54242736..54242738, -

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