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{{UBERON
{{UBERON
|id=UBERON:0001703
|alt_id=UBERON:FMA_53672-ZFA_0001580
|name=neurocranium
|anatomical_img_id=FMA:53672
|namespace=
|def="Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof." [PMID:11523816, Wikipedia:Neuroranium, ZFA:0001580]
|xref=AAO:0010153;;EHDAA2:0000243;;FMA:53672;;MA:0000317;;SCTID:361731002;;TAO:0001580;;XAO:0003170;;ZFA:0001580
|is_a=UBERON:0004120;;UBERON:0011158
|synonym="brain box" EXACT [];;"brain case" RELATED [ZFA:0001580];;"brain pan" RELATED [http://www.thefreedictionary.com/braincase];;"braincase" RELATED [ZFA:0001580]
|comment=Development notes: The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]. Composition notes: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] AO notes: It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ...
|comment=Development notes: The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]. Composition notes: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] AO notes: It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ...
|alt_id=UBERON:FMA_53672-ZFA_0001580
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof." [PMID:11523816, Wikipedia:Neuroranium, ZFA:0001580]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004761
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001703
|is_a=UBERON:0004120 ;;UBERON:0011158
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=neurocranium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003128
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of the cartilages and bones that surround the brain.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of the cartilages and bones that surround the brain.[TAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="brain box" EXACT [];;"brain case" RELATED [ZFA:0001580];;"brain pan" RELATED [http://www.thefreedictionary.com/braincase];;"braincase" RELATED [ZFA:0001580]
|union_of=
|xref=AAO:0010153;;EHDAA2:0000243;;FMA:53672;;MA:0000317;;SCTID:361731002;;TAO:0001580;;XAO:0003170;;ZFA:0001580
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:neurocranium
Namespace:FANTOM
Definition:"Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof." [PMID:11523816, Wikipedia:Neuroranium, ZFA:0001580]
Xrefs:
links:

AAO:0010153
EHDAA2:0000243
FMA:53672
MA:0000317
SCTID:361731002
TAO:0001580
XAO:0003170

ZFA:0001580
Synonyms: "brain box" EXACT []
"brain case" RELATED [ZFA:0001580]
"brain pan" RELATED [1]
"braincase" RELATED [ZFA:0001580]
Comments:Development notes: The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]. Composition notes: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] AO notes: It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ...
Alt_id: UBERON:FMA_53672-ZFA_0001580
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0011158(primary subdivision of skull)
develops_from:UBERON:0004761(cartilaginous neurocranium)
part_of:UBERON:0003128(cranium)



Children

part of:UBERON:0002517 (basicranium),UBERON:0003112 (olfactory region),UBERON:0004637 (otic capsule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001703 (neurocranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_61e9263ab800029138db0fd17eec2107p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_61e9263ab800029138db0fd17eec2107p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_61e9263ab800029138db0fd17eec2107p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_61e9263ab800029138db0fd17eec2107p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_61e9263ab800029138db0fd17eec2107p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_61e9263ab800029138db0fd17eec2107p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_61e9263ab800029138db0fd17eec2107p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_61e9263ab800029138db0fd17eec2107p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_61e9263ab800029138db0fd17eec2107p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_61e9263ab800029138db0fd17eec2107p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_61e9263ab800029138db0fd17eec2107p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_61e9263ab800029138db0fd17eec2107p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_61e9263ab800029138db0fd17eec2107p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_61e9263ab800029138db0fd17eec2107p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_61e9263ab800029138db0fd17eec2107p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_61e9263ab800029138db0fd17eec2107p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_61e9263ab800029138db0fd17eec2107p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_61e9263ab800029138db0fd17eec2107p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_61e9263ab800029138db0fd17eec2107p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_61e9263ab800029138db0fd17eec2107p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_61e9263ab800029138db0fd17eec2107p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_61e9263ab800029138db0fd17eec2107p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_61e9263ab800029138db0fd17eec2107p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_61e9263ab800029138db0fd17eec2107p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_61e9263ab800029138db0fd17eec2107p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_61e9263ab800029138db0fd17eec2107p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_61e9263ab800029138db0fd17eec2107p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_61e9263ab800029138db0fd17eec2107p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_61e9263ab800029138db0fd17eec2107p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_61e9263ab800029138db0fd17eec2107p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_61e9263ab800029138db0fd17eec2107p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_61e9263ab800029138db0fd17eec2107p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_61e9263ab800029138db0fd17eec2107p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_61e9263ab800029138db0fd17eec2107p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_61e9263ab800029138db0fd17eec2107p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_61e9263ab800029138db0fd17eec2107p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_61e9263ab800029138db0fd17eec2107p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_61e9263ab800029138db0fd17eec2107p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_61e9263ab800029138db0fd17eec2107p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_61e9263ab800029138db0fd17eec2107p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_61e9263ab800029138db0fd17eec2107p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_61e9263ab800029138db0fd17eec2107p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_61e9263ab800029138db0fd17eec2107p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_61e9263ab800029138db0fd17eec2107p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_61e9263ab800029138db0fd17eec2107p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_61e9263ab800029138db0fd17eec2107p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_61e9263ab800029138db0fd17eec2107p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_61e9263ab800029138db0fd17eec2107p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_61e9263ab800029138db0fd17eec2107p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_61e9263ab800029138db0fd17eec2107p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_61e9263ab800029138db0fd17eec2107p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_61e9263ab800029138db0fd17eec2107p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_61e9263ab800029138db0fd17eec2107p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_61e9263ab800029138db0fd17eec2107p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_61e9263ab800029138db0fd17eec2107p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_61e9263ab800029138db0fd17eec2107p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_61e9263ab800029138db0fd17eec2107p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_61e9263ab800029138db0fd17eec2107p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_61e9263ab800029138db0fd17eec2107p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_61e9263ab800029138db0fd17eec2107p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_61e9263ab800029138db0fd17eec2107p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_61e9263ab800029138db0fd17eec2107p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_61e9263ab800029138db0fd17eec2107p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_61e9263ab800029138db0fd17eec2107p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_61e9263ab800029138db0fd17eec2107p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_61e9263ab800029138db0fd17eec2107p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_61e9263ab800029138db0fd17eec2107p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_61e9263ab800029138db0fd17eec2107p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_61e9263ab800029138db0fd17eec2107p41@Cacnb2
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_61e9263ab800029138db0fd17eec2107p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_61e9263ab800029138db0fd17eec2107p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_61e9263ab800029138db0fd17eec2107p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_61e9263ab800029138db0fd17eec2107p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_61e9263ab800029138db0fd17eec2107p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_61e9263ab800029138db0fd17eec2107p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_61e9263ab800029138db0fd17eec2107p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_61e9263ab800029138db0fd17eec2107p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_61e9263ab800029138db0fd17eec2107p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_61e9263ab800029138db0fd17eec2107p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_61e9263ab800029138db0fd17eec2107p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_61e9263ab800029138db0fd17eec2107p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_61e9263ab800029138db0fd17eec2107p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_61e9263ab800029138db0fd17eec2107p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_61e9263ab800029138db0fd17eec2107p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_61e9263ab800029138db0fd17eec2107p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_61e9263ab800029138db0fd17eec2107p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_61e9263ab800029138db0fd17eec2107p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_61e9263ab800029138db0fd17eec2107p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_61e9263ab800029138db0fd17eec2107p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_61e9263ab800029138db0fd17eec2107p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_61e9263ab800029138db0fd17eec2107p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_61e9263ab800029138db0fd17eec2107p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_61e9263ab800029138db0fd17eec2107p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_61e9263ab800029138db0fd17eec2107p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_61e9263ab800029138db0fd17eec2107p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_61e9263ab800029138db0fd17eec2107p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_61e9263ab800029138db0fd17eec2107p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_61e9263ab800029138db0fd17eec2107p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_61e9263ab800029138db0fd17eec2107p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_61e9263ab800029138db0fd17eec2107p3@Tecta










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of the cartilages and bones that surround the brain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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