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{{UBERON
{{UBERON
|id=UBERON:0006222
|alt_id=
|name=future diencephalon
|namespace=
|def=
|xref=EFO:0003442;;EHDAA2:0000600;;EHDAA:844;;EMAPA:16514;;RETIRED_EHDAA2:0000386;;TAO:0000574;;ZFA:0000574
|is_a=UBERON:0000481;;UBERON:0002050
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=emapa_ehdaa2;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006222
|is_a=UBERON:0000481 ;;UBERON:0002050 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=future diencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006240
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=emapa_ehdaa2;;vertebrate_core
|preceded_by=
|synonym=
|union_of=
|xref=EFO:0003442;;EHDAA2:0000600;;EHDAA:844;;EMAPA:16514;;RETIRED_EHDAA2:0000386;;TAO:0000574;;ZFA:0000574
}}
}}

Latest revision as of 17:56, 12 September 2014

Name:future diencephalon
Namespace:FANTOM
Xrefs:
links:

EFO:0003442
EHDAA2:0000600
EHDAA:844
EMAPA:16514
RETIRED_EHDAA2:0000386
TAO:0000574

ZFA:0000574
Subset: emapa_ehdaa2
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000481(multi-tissue structure),UBERON:0002050(embryonic structure),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0006240(future forebrain)



Children

develops from:UBERON:0001894 (diencephalon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006222 (future diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.15e-112FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_56b2be7e1f5ec83e8c2727fdcdb638d4p@chr19:7979708..7979734, +
3.15e-112FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_56b2be7e1f5ec83e8c2727fdcdb638d4p@chr19:7979708..7979734, +
4.43e-90FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_7b85443e8defcd2a84d17ef5aef371abp11@SPOCK1
4.43e-90FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_7b85443e8defcd2a84d17ef5aef371abp11@SPOCK1
5.58e-90FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_ee1ba2e6d42072439b1aebf25e8bdbbbp@chr12:128210626..128210641, -
5.58e-90FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_ee1ba2e6d42072439b1aebf25e8bdbbbp@chr12:128210626..128210641, -
1.28e-84FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_d57f15079af71d7f991ac4690886ca0ep@chr19:7979677..7979703, +
1.28e-84FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_d57f15079af71d7f991ac4690886ca0ep@chr19:49519930..49519937, -
1.28e-84FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_d57f15079af71d7f991ac4690886ca0ep@chr19:7979644..7979653, +
1.28e-84FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_d57f15079af71d7f991ac4690886ca0ep@chr19:49519930..49519937, -
1.28e-84FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_d57f15079af71d7f991ac4690886ca0ep@chr19:7979644..7979653, +
1.28e-84FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_d57f15079af71d7f991ac4690886ca0ep@chr19:7979677..7979703, +
1.28e-84FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_d57f15079af71d7f991ac4690886ca0ep1@LHB
1.28e-84FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_d57f15079af71d7f991ac4690886ca0ep1@LHB
1.79e-75FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_7f63358252118e7bede9d7311dc67b24p@chr1:99693441..99693485, -
1.79e-75FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_7f63358252118e7bede9d7311dc67b24p@chr1:99693441..99693485, -
3.86e-75FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_f9de00a790d2c2104eafa218a81c8f15p5@ENST00000513329
3.86e-75FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_f9de00a790d2c2104eafa218a81c8f15p5@ENST00000513329
8.06e-65FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_49044f772a2bc8c74ad20e8b980030eep3@ENST00000443800
8.06e-65FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_49044f772a2bc8c74ad20e8b980030eep3@ENST00000443800
4.15e-64FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_3c0250ec35542b757760bc0df6b7f40fp2@LHX3
4.15e-64FFCP PHASE2:Hg19::chr7:107883809..107883820,-#_3c0250ec35542b757760bc0df6b7f40fp11@NRCAM
4.15e-64FFCP PHASE1:Hg19::chr7:107883809..107883820,-#_3c0250ec35542b757760bc0df6b7f40fp11@NRCAM
4.15e-64FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_3c0250ec35542b757760bc0df6b7f40fp2@LHX3
6.87e-64FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_9e6d4ec324e419b9fb1564464b8758a5p@chr22:47126639..47126654, +
6.87e-64FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_9e6d4ec324e419b9fb1564464b8758a5p@chr22:47126639..47126654, +
1.31e-63FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_1ebb960bca178c9b5abe83e70a1f3726p17@LRRC49
1.31e-63FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_1ebb960bca178c9b5abe83e70a1f3726p17@LRRC49
1.31e-63FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_1ebb960bca178c9b5abe83e70a1f3726p@chr15:75122737..75122741, +
1.31e-63FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_1ebb960bca178c9b5abe83e70a1f3726p@chr4:1233005..1233017, +
1.31e-63FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_1ebb960bca178c9b5abe83e70a1f3726p@chr11:75194071..75194110, -
1.31e-63FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_1ebb960bca178c9b5abe83e70a1f3726p@chr4:1233005..1233017, +
1.31e-63FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_1ebb960bca178c9b5abe83e70a1f3726p@chr11:75194071..75194110, -
1.31e-63FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_1ebb960bca178c9b5abe83e70a1f3726p@chr15:75122737..75122741, +
6.8e-62FFCP PHASE1:Mm9::chr11:50767247..50767270,-#_6f6e4b0c3002ab1c3cfa5fb3304b135ap1@Prop1
6.8e-62FFCP PHASE2:Mm9::chr11:50767247..50767270,-#_6f6e4b0c3002ab1c3cfa5fb3304b135ap1@Prop1
8.33e-61FFCP PHASE2:Mm9::chr4:34840978..34840987,+#_f8403ac5556ec42be6d1edcec352ba3cp3@Cga
8.33e-61FFCP PHASE1:Mm9::chr3:102586593..102586598,-#_f8403ac5556ec42be6d1edcec352ba3cp1@Tshb
8.33e-61FFCP PHASE2:Mm9::chr4:139040826..139040847,+#_f8403ac5556ec42be6d1edcec352ba3cp@chr4:139040826..139040847, +
8.33e-61FFCP PHASE1:Mm9::chr2:157395240..157395251,-#_f8403ac5556ec42be6d1edcec352ba3cp@chr2:157395240..157395251, -
8.33e-61FFCP PHASE1:Mm9::chr5:33861619..33861630,-#_f8403ac5556ec42be6d1edcec352ba3cp@chr5:33861619..33861630, -
8.33e-61FFCP PHASE1:Mm9::chr4:34840978..34840987,+#_f8403ac5556ec42be6d1edcec352ba3cp3@Cga
8.33e-61FFCP PHASE1:Mm9::chr4:139040826..139040847,+#_f8403ac5556ec42be6d1edcec352ba3cp@chr4:139040826..139040847, +
8.33e-61FFCP PHASE2:Mm9::chr3:102586593..102586598,-#_f8403ac5556ec42be6d1edcec352ba3cp1@Tshb
8.33e-61FFCP PHASE1:Mm9::chr16:65520838..65520853,+#_f8403ac5556ec42be6d1edcec352ba3cp1@Pou1f1
8.33e-61FFCP PHASE2:Mm9::chr7:86033242..86033245,+#_f8403ac5556ec42be6d1edcec352ba3cp1@Mir7-2
8.33e-61FFCP PHASE1:Mm9::chr7:86033242..86033245,+#_f8403ac5556ec42be6d1edcec352ba3cp1@Mir7-2
8.33e-61FFCP PHASE2:Mm9::chr5:33861619..33861630,-#_f8403ac5556ec42be6d1edcec352ba3cp@chr5:33861619..33861630, -
8.33e-61FFCP PHASE2:Mm9::chr16:65520838..65520853,+#_f8403ac5556ec42be6d1edcec352ba3cp1@Pou1f1
8.33e-61FFCP PHASE2:Mm9::chr2:157395240..157395251,-#_f8403ac5556ec42be6d1edcec352ba3cp@chr2:157395240..157395251, -
4.76e-57FFCP PHASE1:Hg19::chr12:89881337..89881342,-#_7dddec428352c71b717707bf8404dbaap@chr12:89881337..89881342, -
4.76e-57FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_7dddec428352c71b717707bf8404dbaap@chr11:84530787..84530803, +
4.76e-57FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_7dddec428352c71b717707bf8404dbaap@chr11:18063669..18063678, -
4.76e-57FFCP PHASE1:Hg19::chr17:61996252..61996253,-#_7dddec428352c71b717707bf8404dbaap2@GH1, p3@CSHL1
4.76e-57FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_7dddec428352c71b717707bf8404dbaap@chr12:56582028..56582062, +
4.76e-57FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_7dddec428352c71b717707bf8404dbaap@chr11:18039672..18039678, -
4.76e-57FFCP PHASE1:Hg19::chr16:1210506..1210513,-#_7dddec428352c71b717707bf8404dbaap@chr16:1210506..1210513, -
4.76e-57FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_7dddec428352c71b717707bf8404dbaap@chr1:13820103..13820109, +
4.76e-57FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_7dddec428352c71b717707bf8404dbaap@chr11:72297717..72297725, -
4.76e-57FFCP PHASE1:Hg19::chr17:61996393..61996421,-#_7dddec428352c71b717707bf8404dbaap4@CSHL1, p4@GH1
4.76e-57FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_7dddec428352c71b717707bf8404dbaap@chr14:55282406..55282415, -
4.76e-57FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_7dddec428352c71b717707bf8404dbaap22@TUBA1C
4.76e-57FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_7dddec428352c71b717707bf8404dbaap@chr18:56962131..56962138, -
4.76e-57FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_7dddec428352c71b717707bf8404dbaap15@CABP1
4.76e-57FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_7dddec428352c71b717707bf8404dbaap@chr11:18040537..18040547, -
4.76e-57FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_7dddec428352c71b717707bf8404dbaap@chr12:99734965..99734976, -
4.76e-57FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_7dddec428352c71b717707bf8404dbaap9@GNB3
4.76e-57FFCP PHASE1:Hg19::chr17:61995371..61995384,+#_7dddec428352c71b717707bf8404dbaap@chr17:61995371..61995384, +
4.76e-57FFCP PHASE1:Hg19::chr17:61995410..61995414,-#_7dddec428352c71b717707bf8404dbaap@chr17:61995410..61995414, -
4.76e-57FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_7dddec428352c71b717707bf8404dbaap@chr15:47662877..47662880, -
4.76e-57FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_7dddec428352c71b717707bf8404dbaap5@AANAT
4.76e-57FFCP PHASE1:Hg19::chr17:61995906..61995914,-#_7dddec428352c71b717707bf8404dbaap6@AB591020
4.76e-57FFCP PHASE1:Hg19::chr17:61995704..61995739,+#_7dddec428352c71b717707bf8404dbaap@chr17:61995704..61995739, +
4.76e-57FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_7dddec428352c71b717707bf8404dbaap@chr16:17930871..17930877, -
4.76e-57FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_7dddec428352c71b717707bf8404dbaap9@LOC100507050
4.76e-57FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_7dddec428352c71b717707bf8404dbaap@chr12:15134610..15134617, +
4.76e-57FFCP PHASE1:Hg19::chr19:49519519..49519562,-#_7dddec428352c71b717707bf8404dbaap2@CU678753
4.76e-57FFCP PHASE1:Hg19::chr17:61996018..61996019,-#_7dddec428352c71b717707bf8404dbaap5@AB591020
4.76e-57FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_7dddec428352c71b717707bf8404dbaap@chr13:52650486..52650491, -
4.76e-57FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_7dddec428352c71b717707bf8404dbaap@chr13:52650530..52650533, -
4.76e-57FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_7dddec428352c71b717707bf8404dbaap@chr11:18041194..18041197, -
4.76e-57FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_7dddec428352c71b717707bf8404dbaap@chr11:18067951..18067954, -
4.76e-57FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_7dddec428352c71b717707bf8404dbaap1@BC014398
4.76e-57FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_7dddec428352c71b717707bf8404dbaap@chr16:18066399..18066411, -
4.76e-57FFCP PHASE1:Hg19::chr12:55422293..55422300,+#_7dddec428352c71b717707bf8404dbaap@chr12:55422293..55422300, +
4.76e-57FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_7dddec428352c71b717707bf8404dbaap@chr12:55422565..55422604, +
4.76e-57FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_7dddec428352c71b717707bf8404dbaap4@AANAT
4.76e-57FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_7dddec428352c71b717707bf8404dbaap@chr10:80984180..80984190, -
4.76e-57FFCP PHASE1:Hg19::chr12:89881348..89881356,-#_7dddec428352c71b717707bf8404dbaap@chr12:89881348..89881356, -
4.76e-57FFCP PHASE1:Hg19::chr19:2608406..2608413,-#_7dddec428352c71b717707bf8404dbaap@chr19:2608406..2608413, -
4.76e-57FFCP PHASE1:Hg19::chr17:61995979..61995990,-#_7dddec428352c71b717707bf8404dbaap2@AB591020
4.76e-57FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_7dddec428352c71b717707bf8404dbaap@chr11:18042584..18042593, -
4.76e-57FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_7dddec428352c71b717707bf8404dbaap@chr13:56628524..56628547, -
4.76e-57FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_7dddec428352c71b717707bf8404dbaap@chr16:18066392..18066397, -
4.76e-57FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_7dddec428352c71b717707bf8404dbaap@chr18:56963093..56963105, -
4.76e-57FFCP PHASE1:Hg19::chr17:61996160..61996176,-#_7dddec428352c71b717707bf8404dbaap3@GH1
4.76e-57FFCP PHASE1:Hg19::chr16:21049173..21049231,-#_7dddec428352c71b717707bf8404dbaap@chr16:21049173..21049231, -
4.76e-57FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_7dddec428352c71b717707bf8404dbaap@chr12:60826120..60826127, +
4.76e-57FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_7dddec428352c71b717707bf8404dbaap@chr18:56963107..56963117, -
4.76e-57FFCP PHASE1:Hg19::chr10:123959529..123959547,+#_7dddec428352c71b717707bf8404dbaap@chr10:123959529..123959547, +

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