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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004945
|accession_numbers=CAGE;DRX009058;DRR009932;DRZ001357;DRZ002740;DRZ012707;DRZ014090
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.87!733.23!Rbpjl;;chr2:19367259..19367278,+!p1@Ptf1a!2.57!370.31!Ptf1a;;chr5:144951153..144951203,+!p1@Bhlha15!2.43!383.89!Bhlha15;;chr10:61595830..61595846,+!p1@Neurog3!2.04!108.67!Neurog3;;chr7:19608891..19608895,-!p1@Foxa3!1.72!65.56!Foxa3;;chr9:74709695..74709722,+!p1@Onecut1!1.69!47.54!Onecut1;;chr17:27865882..27865901,-!p1@Spdef!1.62!41.05!Spdef;;chr2:147871627..147871641,-!p1@Foxa2!1.51!31.60!Foxa2;;chr2:163332558..163332596,+!p2@Hnf4a!1.48!29.23!Hnf4a;;chr8:59799772..59799789,+!p1@Hand2!1.47!80.62!Hand2;;chr2:79296783..79296801,-!p1@Neurod1!1.34!20.97!Neurod1;;chr7:17647736..17647772,-!p1@Hif3a!1.33!71.46!Hif3a;;chr14:63864056..63864102,-!p1@Gata4!1.31!33.07!Gata4;;chr1:138857076..138857105,-!p1@Nr5a2!1.31!19.19!Nr5a2;;chr4:133109285..133109308,+!p1@Nr0b2!1.29!18.60!Nr0b2;;chr5:148081686..148081715,+!p1@Pdx1!1.20!14.77!Pdx1;;chr11:83664365..83664383,+!p1@Hnf1b!1.13!12.40!Hnf1b;;chr5:125538737..125538781,-!p2@Ncor2!1.11!43.11!Ncor2;;chr9:96620459..96620478,-!p9@Zbtb38!1.08!12.11!Zbtb38;;chr3:30039329..30039355,-!p5@Mecom!1.08!10.93!Mecom;;chr11:98605517..98605539,+!p5@Thra!1.06!15.36!Thra;;chr5:148081722..148081744,+!p2@Pdx1!1.05!10.34!Pdx1;;chrX:45245679..45245702,-!p1@Smarca1!1.04!45.18!Smarca1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.03!9.74!Nkx2-3;;chr2:146047829..146047847,+!p1@Insm1!1.02!17.42!Insm1;;chr5:148081667..148081678,+!p3@Pdx1!1.01!9.15!Pdx1;;chr14:63890519..63890539,-!p3@Gata4!1.01!9.15!Gata4;;chr7:52472041..52472065,+!p2@Tead2!1.00!10.63!Tead2;;chr5:135582751..135582788,+!p1@Mlxipl!0.99!35.73!Mlxipl;;chr10:22539932..22539956,-!p1@Tcf21!0.98!23.33!Tcf21;;chr1:138857048..138857071,-!p2@Nr5a2!0.98!8.56!Nr5a2;;chr5:102094214..102094230,-!p1@Nkx6-1!0.97!8.27!Nkx6-1;;chr19:10315179..10315241,-!p1@Gm98!0.96!87.11!Gm98;;chr7:6649134..6649167,-!p1@Zim1!0.95!44.59!Zim1;;chr10:12810631..12810649,+!p1@Plagl1!0.94!207.89!Plagl1;;chr2:103264213..103264233,+!p1@Elf5!0.94!7.68!Elf5;;chr1:138857112..138857130,-!p7@Nr5a2!0.94!7.68!Nr5a2;;chr2:103143336..103143367,-!p1@Ehf!0.92!12.11!Ehf;;chr14:63890660..63890687,-!p7@Gata4!0.92!7.38!Gata4;;chr19:5560600..5560617,-!p1@Ovol1!0.91!8.86!Ovol1;;chr1:138846009..138846038,-!p3@Nr5a2!0.90!7.97!Nr5a2;;chr2:147012125..147012149,-!p1@Nkx2-2!0.89!6.79!Nkx2-2;;chr1:137155026..137155042,-!p1@Elf3!0.87!39.28!Elf3;;chr2:105509045..105509071,+!p1@Pax6!0.87!6.50!Pax6;;chr7:52471143..52471186,+!p1@Tead2!0.86!70.87!Tead2;;chr14:63890545..63890560,-!p5@Gata4!0.86!6.20!Gata4;;chr13:117099847..117099907,-!p1@Isl1!0.85!11.52!Isl1;;chr4:135129538..135129558,-!p1@Grhl3!0.84!9.15!Grhl3;;chr12:9581262..9581282,+!p1@Osr1!0.80!69.69!Osr1;;chr3:90046995..90047031,-!p2@Creb3l4!0.80!6.79!Creb3l4;;chr2:147019977..147019985,-!p2@Nkx2-2!0.80!5.32!Nkx2-2;;chr14:63890491..63890516,-!p2@Gata4!0.80!5.32!Gata4;;chrX:108009761..108009788,+!p1@Pou3f4!0.80!5.32!Pou3f4;;chr1:138846079..138846103,-!p6@Nr5a2!0.78!5.02!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.76!4.72!Hnf1a;;chr14:63890459..63890484,-!p4@Gata4!0.76!4.72!Gata4;;chr15:75578748..75578752,-!p1@Mafa!0.76!4.72!Mafa;;chr15:35225845..35225867,+!p1@Osr2!0.75!12.40!Osr2;;chrX:90531838..90531861,+!p1@Arx!0.73!5.61!Arx;;chr19:45225149..45225186,+!p1@Tlx1!0.73!4.43!Tlx1;;chr14:63890691..63890718,-!p8@Gata4!0.73!4.43!Gata4;;chr9:74714303..74714318,+!p2@Onecut1!0.73!4.43!Onecut1;;chr6:90412582..90412601,+!p1@Klf15!0.72!22.44!Klf15;;chr6:52114821..52114828,-!p1@Hoxa2!0.72!6.79!Hoxa2;;chr6:52154414..52154462,-!p1@Hoxa5!0.71!5.91!Hoxa5;;chr10:88969376..88969395,-!p1@Nr1h4!0.71!4.13!Nr1h4;;chr2:147012101..147012118,-!p3@Nkx2-2!0.71!4.13!Nkx2-2;;chr19:37509324..37509337,+!p1@Hhex!0.70!32.19!Hhex;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.70!6.50!Mesp2;;chr11:5420954..5420969,+!p2@Xbp1!0.69!55.22!Xbp1;;chr18:11052642..11052659,+!p1@Gata6!0.69!22.44!Gata6;;chr1:138846047..138846074,-!p5@Nr5a2!0.68!4.13!Nr5a2;;chr9:74709682..74709691,+!p3@Onecut1!0.68!3.84!Onecut1;;chr4:154010409..154010466,-!p2@Prdm16!0.67!9.45!Prdm16;;chr11:121380640..121380655,-!p1@Zfp750!0.67!6.50!Zfp750;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.66!40.46!Zfp706;;chr18:11052456..11052477,+!p3@Gata6!0.66!12.40!Gata6;;chr8:87425854..87425891,+!p1@Klf1!0.66!3.54!Klf1;;chr2:103143315..103143328,-!p2@Ehf!0.66!3.54!Ehf;;chr6:30908793..30908815,-!p1@Klf14!0.66!3.54!Klf14;;chr13:48758276..48758291,+!p1@Barx1!0.66!3.54!Barx1;;chr5:102094266..102094273,-!p3@Nkx6-1!0.66!3.54!Nkx6-1;;chr2:115888250..115888298,-!p10@Meis2!0.65!4.43!Meis2;;chr11:112643496..112643562,+!p1@Sox9!0.64!148.83!Sox9;;chr18:80904854..80904919,-!p2@Nfatc1!0.64!47.54!Nfatc1;;chr18:11052606..11052633,+!p4@Gata6!0.64!9.45!Gata6;;chr11:98826178..98826197,+!p7@Rara!0.63!3.25!Rara;;chr2:147871948..147871977,-!p3@Foxa2!0.63!3.25!Foxa2;;chr2:147872074..147872079,-!p4@Foxa2!0.63!3.25!Foxa2;;chr2:147872790..147872821,-!p2@Foxa2!0.63!3.25!Foxa2;;chr13:48758358..48758415,+!p2@Barx1!0.63!3.25!Barx1;;chr2:168415815..168415872,-!p1@Nfatc2!0.62!20.38!Nfatc2;;chr18:69681439..69681456,+!p7@Tcf4!0.62!9.15!Tcf4;;chr7:17642053..17642066,-!p2@Hif3a!0.62!4.72!Hif3a;;chr8:124806048..124806094,+!p1@Zfpm1!0.61!33.96!Zfpm1;;chr18:11052485..11052508,+!p2@Gata6!0.60!9.74!Gata6;;chr1:138845748..138845766,-!p4@Nr5a2!0.60!4.13!Nr5a2;;chr1:138846117..138846129,-!p8@Nr5a2!0.60!2.95!Nr5a2;;chr19:55972767..55972779,+!p20@Tcf7l2!0.60!2.95!Tcf7l2;;chr7:17642177..17642223,-!p3@Hif3a!0.60!2.95!Hif3a;;chr11:5420655..5420659,+!p3@Xbp1!0.60!2.95!Xbp1;;chr4:154010918..154010931,-!p1@Prdm16!0.59!9.74!Prdm16;;chr6:52154386..52154407,-!p2@Hoxa5!0.59!3.84!Hoxa5;;chr11:5420973..5420992,+!p1@Xbp1!0.58!362.93!Xbp1;;chr14:22807083..22807104,-!p1@Zfp503!0.58!60.83!Zfp503;;chr6:72849280..72849297,-!p6@Kcmf1!0.57!5.91!Kcmf1;;chr2:91864661..91864686,-!p1@Creb3l1!0.56!71.76!Creb3l1;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.56!12.40!Ppp1r13l;;chr13:72766250..72766273,+!p1@Irx2!0.56!4.43!Irx2;;chr9:74714281..74714296,+!p5@Onecut1!0.56!2.66!Onecut1;;chr7:108966820..108966835,+!p1@Phox2a!0.56!2.66!Phox2a;;chr10:51397572..51397595,+!p1@Rfx6!0.56!2.66!Rfx6;;chr14:64562503..64562524,+!p1@Sox7!0.55!18.60!Sox7;;chr14:56443806..56443848,+!p1@Nfatc4!0.55!5.91!Nfatc4;;chr11:121380594..121380609,-!p2@Zfp750!0.55!5.02!Zfp750;;chr2:104966766..104966786,+!p1@Wt1!0.55!4.43!Wt1;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.54!96.27!Zfp706;;chr10:119913310..119913366,-!p1@Hmga2!0.54!24.51!Hmga2;;chr14:65977498..65977528,+!p1@Zfp395!0.54!20.67!Zfp395;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.54!3.54!Hoxb2;;chr6:15135639..15135655,+!p9@Foxp2!0.54!3.25!Foxp2;;chr7:17642018..17642045,-!p4@Hif3a!0.54!2.95!Hif3a;;chr7:148513409..148513455,-!p2@Deaf1!0.53!13.88!Deaf1;;chr1:93698030..93698064,+!p1@Twist2!0.53!5.61!Twist2;;chr2:151969288..151969294,+!p1@Tcf15!0.53!4.13!Tcf15;;chr5:115421065..115421088,-!p1@Hnf1a!0.53!2.36!Hnf1a;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.53!2.36!Ppard;;chr2:91864300..91864379,-!p2@Creb3l1!0.52!7.97!Creb3l1;;chr2:56976543..56976558,-!p2@Nr4a2!0.52!6.20!Nr4a2;;chr6:90412608..90412630,+!p2@Klf15!0.52!5.61!Klf15;;chr14:22807216..22807231,-!p3@Zfp503!0.52!4.43!Zfp503;;chr15:103085660..103085681,-!p1@Nfe2!0.52!3.84!Nfe2;;chr11:96145450..96145517,+!p2@Hoxb7!0.52!3.84!Hoxb7;;chr18:74375772..74375799,+!p2@Cxxc1!0.51!7.97!Cxxc1;;chr15:102865088..102865107,+!p1@Hoxc4!0.51!3.25!Hoxc4;;chr1:191994550..191994623,-!p1@Prox1!0.50!19.49!Prox1;;chr11:85646303..85646329,+!p1@Tbx2!0.50!18.60!Tbx2;;chr5:104121453..104121479,+!p4@Aff1!0.50!12.70!Aff1;;chr8:123608252..123608268,+!p1@Foxf1a!0.50!3.54!Foxf1a;;chr13:72101161..72101177,-!p2@Irx1!0.50!3.25!Irx1;;chr16:4594740..4594759,+!p1@Glis2!0.49!31.30!Glis2;;chr11:74981654..74981658,-!p1@Hic1!0.49!10.63!Hic1;;chr19:5560570..5560582,-!p2@Ovol1!0.49!2.07!Ovol1;;chr17:26978409..26978442,-!p1@Nkx2-5!0.49!2.07!Nkx2-5;;chr5:144951136..144951139,+!p2@Bhlha15!0.49!2.07!Bhlha15;;chr4:13678723..13678739,+!p10@Runx1t1!0.49!2.07!Runx1t1;;chr2:104966874..104966907,+!p2@Wt1!0.49!2.07!Wt1;;chr2:104966662..104966673,+!p4@Wt1!0.49!2.07!Wt1;;chr18:7004715..7004731,-!p1@Mkx!0.48!5.91!Mkx;;chr19:10315252..10315266,-!p2@Gm98!0.48!3.54!Gm98;;chr4:122911056..122911065,+!p2@Heyl!0.48!3.54!Heyl;;chr15:75578637..75578669,-!p2@Mafa!0.48!2.36!Mafa;;chr19:28754692..28754757,-!p1@Glis3!0.47!10.63!Glis3;;chr17:3557718..3557733,-!p2@Tfb1m!0.47!6.79!Tfb1m;;chr12:9581284..9581303,+!p2@Osr1!0.47!4.43!Osr1;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.47!3.84!Hoxb2;;chr19:25746898..25746910,+!p1@Dmrt2!0.47!3.25!Dmrt2;;chr1:140739014..140739032,-!p1@Lhx9!0.47!2.66!Lhx9;;chr3:30408384..30408431,-!p4@Mecom!0.47!2.66!Mecom;;chr11:106128936..106128955,-!p4@Smarcd2!0.47!2.36!Smarcd2;;chr15:61817095..61817111,+!p1@Myc!0.46!157.69!Myc;;chr7:144506077..144506128,-!p1@Ebf3!0.46!5.32!Ebf3;;chr12:113916993..113917009,+!p2@Zbtb42!0.46!3.84!Zbtb42;;chr2:91864449..91864492,-!p3@Creb3l1!0.46!3.54!Creb3l1;;chr15:78994907..78994926,-!p1@Sox10!0.45!5.91!Sox10;;chr2:115891427..115891441,-!p4@Meis2!0.45!4.72!Meis2;;chr7:6683123..6683142,-!p1@Peg3!0.44!131.41!Peg3;;chr2:181406327..181406350,-!p1@Sox18!0.44!78.55!Sox18;;chr6:86475924..86475935,-!p2@Pcbp1!0.44!41.34!Pcbp1;;chr14:79915425..79915501,+!p1@Elf1!0.44!21.85!Elf1;;chr1:186556323..186556370,-!p2@Hlx!0.44!6.20!Hlx;;chr1:186556375..186556404,-!p3@Hlx!0.44!3.84!Hlx;;chr11:101755669..101755686,-!p1@Meox1!0.44!3.84!Meox1;;chr2:28477452..28477483,-!p1@Gfi1b!0.44!2.36!Gfi1b;;chr15:102865131..102865151,+!p2@Hoxc4!0.44!2.07!Hoxc4;;chr14:63864337..63864381,-!p6@Gata4!0.44!1.77!Gata4;;chr1:6724908..6724955,+!p2@St18!0.44!1.77!St18;;chr2:104966933..104966966,+!p3@Wt1!0.44!1.77!Wt1;;chr2:74550015..74550057,+!p2@Hoxd3!0.44!1.77!Hoxd3;;chr11:84339016..84339044,-!p1@Lhx1!0.44!1.77!Lhx1;;chr5:29805118..29805137,-!p1@Mnx1!0.44!1.77!Mnx1;;chr19:45225276..45225304,+!p2@Tlx1!0.44!1.77!Tlx1;;chr2:152758901..152758925,-!p1@Foxs1!0.43!10.34!Foxs1;;chr4:99322820..99322845,+!p1@Foxd3!0.43!2.36!Foxd3;;chr9:63605740..63605771,-!p1@Smad3!0.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Tfcp2l1;;chr1:4486594..4486612,-!p6@Sox17!0.11!0.30!Sox17;;chr2:30701003..30701028,+!p6@Prrx2!0.11!0.30!Prrx2;;chr1:169548377..169548430,+!p1@Rxrg!0.11!0.30!Rxrg;;chr2:147872720..147872727,-!p9@Foxa2!0.11!0.30!Foxa2;;chr2:181498020..181498040,+!p5@Myt1!0.11!0.30!Myt1;;chr2:127347042..127347058,-!p3@Kcnip3!0.11!0.30!Kcnip3;;chr19:59533163..59533185,+!p3@Emx2!0.11!0.30!Emx2;;chr1:138850177..138850182,-!p11@Nr5a2!0.11!0.30!Nr5a2;;chr1:69732797..69732812,-!p5@Ikzf2!0.11!0.30!Ikzf2;;chr2:115891770..115891799,-!p25@Meis2!0.11!0.30!Meis2;;chr2:24331085..24331100,-!p1@Pax8!0.11!0.30!Pax8;;chr2:180069410..180069421,-!p3@Gata5!0.11!0.30!Gata5;;chr2:105509100..105509107,+!p6@Pax6!0.11!0.30!Pax6;;chr2:115874845..115874865,-!p20@Meis2!0.11!0.30!Meis2;;chrX:108009602..108009615,+!p4@Pou3f4!0.11!0.30!Pou3f4;;chr7:77511928..77511937,-!p12@Nr2f2!0.11!0.30!Nr2f2;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.11!0.30!Foxl1;;chr9:113840426..113840435,+!p8@Ubp1!0.11!0.30!Ubp1;;chr8:26958093..26958148,-!p2@Ash2l!0.11!0.30!Ash2l;;chr9:87625971..87625992,-!p2@Tbx18!0.11!0.30!Tbx18;;chr9:31721051..31721068,-!p3@Barx2!0.11!0.30!Barx2;;chr7:52252978..52252989,+!p5@Irf3!0.11!0.30!Irf3;;chr9:119893782..119893802,-!p1@Csrnp1!0.11!0.30!Csrnp1;;chr8:73222425..73222444,+!p2@Jund!0.11!0.30!Jund;;chr7:30088957..30088966,+!p6@Dpf1!0.11!0.30!Dpf1;;chr9:63869918..63869936,-!p9@Smad6!0.11!0.30!Smad6;;chr9:55388997..55389016,+!p1@Isl2!0.11!0.30!Isl2;;chr8:87232404..87232415,-!p22@Nfix!0.11!0.30!Nfix;;chr9:106362954..106362977,+!p6@Pcbp4!0.11!0.30!Pcbp4;;chr8:86590283..86590297,+!p5@Rfx1!0.11!0.30!Rfx1;;chr7:31065553..31065603,+!p@chr7:31065553..31065603,+!0.11!0.30!Thap8;;chr2:9809357..9809371,-!p2@Gata3!0.11!0.30!Gata3;;chr3:29912249..29912262,-!p26@Mecom!0.11!0.30!Mecom;;chr3:95032792..95032801,-!p10@Mllt11!0.11!0.30!Mllt11;;chr4:114729957..114730012,+!p3@Tal1!0.11!0.30!Tal1;;chr3:94181376..94181403,+!p2@Rorc!0.11!0.30!Rorc;;chr3:29912169..29912182,-!p12@Mecom!0.11!0.30!Mecom;;chr3:29911947..29911958,-!p14@Mecom!0.11!0.30!Mecom;;chr4:13678482..13678505,+!p9@Runx1t1!0.11!0.30!Runx1t1;;chr3:3508005..3508021,+!p3@Hnf4g!0.11!0.30!Hnf4g;;chr3:32264814..32264835,-!p5@Zmat3!0.11!0.30!Zmat3;;chr4:139388835..139388867,-!p1@Pax7!0.11!0.30!Pax7;;chr3:99057677..99057730,+!p2@Tbx15!0.11!0.30!Tbx15;;chr4:153708892..153708904,-!p13@Prdm16!0.11!0.30!Prdm16;;chr4:119486980..119486993,+!p6@Hivep3!0.11!0.30!Hivep3;;chr4:154010882..154010889,-!p10@Prdm16!0.11!0.30!Prdm16;;chr3:135257370..135257389,-!p9@Nfkb1!0.11!0.30!Nfkb1;;chr4:114732159..114732166,+!p6@Tal1!0.11!0.30!Tal1;;chr3:29911926..29911942,-!p13@Mecom!0.11!0.30!Mecom;;chr2:74543143..74543158,+!p9@Hoxd8!0.11!0.30!Hoxd8;;chr2:74536026..74536039,+!p1@Hoxd9!0.11!0.30!Hoxd9;;chr2:74549915..74549930,+!p6@Hoxd3!0.11!0.30!Hoxd3;;chr2:74543397..74543435,+!p2@Hoxd8!0.11!0.30!Hoxd8;;chr2:71367871..71367898,+!p1@Dlx1!0.11!0.30!Dlx1;;chr2:74536003..74536008,+!p7@Hoxd9!0.11!0.30!Hoxd9;;chr4:84192360..84192376,-!p8@Bnc2!0.11!0.30!Bnc2;;chr4:87452167..87452178,-!p8@Mllt3!0.11!0.30!Mllt3;;chr2:74542882..74542894,+!p10@Hoxd8!0.11!0.30!Hoxd8;;chr2:74513125..74513143,+!p1@Hoxd12!0.11!0.30!Hoxd12;;chr2:74517609..74517621,+!p3@Hoxd11!0.11!0.30!Hoxd11;;chr5:104182999..104183006,+!p18@Aff1!0.11!0.30!Aff1;;chr2:74543202..74543213,+!p3@Hoxd8!0.11!0.30!Hoxd8;;chr16:14705668..14705683,+!p3@Snai2!0.11!0.30!Snai2;;chr16:38294860..38294924,-!p1@Nr1i2!0.11!0.30!Nr1i2;;chr19:43686882..43686906,+!p2@Nkx2-3!0.11!0.30!Nkx2-3;;chr16:55819071..55819073,-!p11@Nfkbiz!0.11!0.30!Nfkbiz;;chr19:46222739..46222745,-!p2@Pitx3!0.11!0.30!Pitx3;;
|expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.87!733.23!Rbpjl;;chr2:19367259..19367278,+!p1@Ptf1a!2.57!370.31!Ptf1a;;chr5:144951153..144951203,+!p1@Bhlha15!2.43!383.89!Bhlha15;;chr10:61595830..61595846,+!p1@Neurog3!2.04!108.67!Neurog3;;chr7:19608891..19608895,-!p1@Foxa3!1.72!65.56!Foxa3;;chr9:74709695..74709722,+!p1@Onecut1!1.69!47.54!Onecut1;;chr17:27865882..27865901,-!p1@Spdef!1.62!41.05!Spdef;;chr2:147871627..147871641,-!p1@Foxa2!1.51!31.60!Foxa2;;chr2:163332558..163332596,+!p2@Hnf4a!1.48!29.23!Hnf4a;;chr8:59799772..59799789,+!p1@Hand2!1.47!80.62!Hand2;;chr2:79296783..79296801,-!p1@Neurod1!1.34!20.97!Neurod1;;chr7:17647736..17647772,-!p1@Hif3a!1.33!71.46!Hif3a;;chr14:63864056..63864102,-!p1@Gata4!1.31!33.07!Gata4;;chr1:138857076..138857105,-!p1@Nr5a2!1.31!19.19!Nr5a2;;chr4:133109285..133109308,+!p1@Nr0b2!1.29!18.60!Nr0b2;;chr5:148081686..148081715,+!p1@Pdx1!1.20!14.77!Pdx1;;chr11:83664365..83664383,+!p1@Hnf1b!1.13!12.40!Hnf1b;;chr5:125538737..125538781,-!p2@Ncor2!1.11!43.11!Ncor2;;chr9:96620459..96620478,-!p9@Zbtb38!1.08!12.11!Zbtb38;;chr3:30039329..30039355,-!p5@Mecom!1.08!10.93!Mecom;;chr11:98605517..98605539,+!p5@Thra!1.06!15.36!Thra;;chr5:148081722..148081744,+!p2@Pdx1!1.05!10.34!Pdx1;;chrX:45245679..45245702,-!p1@Smarca1!1.04!45.18!Smarca1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.03!9.74!Nkx2-3;;chr2:146047829..146047847,+!p1@Insm1!1.02!17.42!Insm1;;chr5:148081667..148081678,+!p3@Pdx1!1.01!9.15!Pdx1;;chr14:63890519..63890539,-!p3@Gata4!1.01!9.15!Gata4;;chr7:52472041..52472065,+!p2@Tead2!1.00!10.63!Tead2;;chr5:135582751..135582788,+!p1@Mlxipl!0.99!35.73!Mlxipl;;chr10:22539932..22539956,-!p1@Tcf21!0.98!23.33!Tcf21;;chr1:138857048..138857071,-!p2@Nr5a2!0.98!8.56!Nr5a2;;chr5:102094214..102094230,-!p1@Nkx6-1!0.97!8.27!Nkx6-1;;chr19:10315179..10315241,-!p1@Gm98!0.96!87.11!Gm98;;chr7:6649134..6649167,-!p1@Zim1!0.95!44.59!Zim1;;chr10:12810631..12810649,+!p1@Plagl1!0.94!207.89!Plagl1;;chr2:103264213..103264233,+!p1@Elf5!0.94!7.68!Elf5;;chr1:138857112..138857130,-!p7@Nr5a2!0.94!7.68!Nr5a2;;chr2:103143336..103143367,-!p1@Ehf!0.92!12.11!Ehf;;chr14:63890660..63890687,-!p7@Gata4!0.92!7.38!Gata4;;chr19:5560600..5560617,-!p1@Ovol1!0.91!8.86!Ovol1;;chr1:138846009..138846038,-!p3@Nr5a2!0.90!7.97!Nr5a2;;chr2:147012125..147012149,-!p1@Nkx2-2!0.89!6.79!Nkx2-2;;chr1:137155026..137155042,-!p1@Elf3!0.87!39.28!Elf3;;chr2:105509045..105509071,+!p1@Pax6!0.87!6.50!Pax6;;chr7:52471143..52471186,+!p1@Tead2!0.86!70.87!Tead2;;chr14:63890545..63890560,-!p5@Gata4!0.86!6.20!Gata4;;chr13:117099847..117099907,-!p1@Isl1!0.85!11.52!Isl1;;chr4:135129538..135129558,-!p1@Grhl3!0.84!9.15!Grhl3;;chr12:9581262..9581282,+!p1@Osr1!0.80!69.69!Osr1;;chr3:90046995..90047031,-!p2@Creb3l4!0.80!6.79!Creb3l4;;chr2:147019977..147019985,-!p2@Nkx2-2!0.80!5.32!Nkx2-2;;chr14:63890491..63890516,-!p2@Gata4!0.80!5.32!Gata4;;chrX:108009761..108009788,+!p1@Pou3f4!0.80!5.32!Pou3f4;;chr1:138846079..138846103,-!p6@Nr5a2!0.78!5.02!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.76!4.72!Hnf1a;;chr14:63890459..63890484,-!p4@Gata4!0.76!4.72!Gata4;;chr15:75578748..75578752,-!p1@Mafa!0.76!4.72!Mafa;;chr15:35225845..35225867,+!p1@Osr2!0.75!12.40!Osr2;;chrX:90531838..90531861,+!p1@Arx!0.73!5.61!Arx;;chr19:45225149..45225186,+!p1@Tlx1!0.73!4.43!Tlx1;;chr14:63890691..63890718,-!p8@Gata4!0.73!4.43!Gata4;;chr9:74714303..74714318,+!p2@Onecut1!0.73!4.43!Onecut1;;chr6:90412582..90412601,+!p1@Klf15!0.72!22.44!Klf15;;chr6:52114821..52114828,-!p1@Hoxa2!0.72!6.79!Hoxa2;;chr6:52154414..52154462,-!p1@Hoxa5!0.71!5.91!Hoxa5;;chr10:88969376..88969395,-!p1@Nr1h4!0.71!4.13!Nr1h4;;chr2:147012101..147012118,-!p3@Nkx2-2!0.71!4.13!Nkx2-2;;chr19:37509324..37509337,+!p1@Hhex!0.70!32.19!Hhex;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.70!6.50!Mesp2;;chr11:5420954..5420969,+!p2@Xbp1!0.69!55.22!Xbp1;;chr18:11052642..11052659,+!p1@Gata6!0.69!22.44!Gata6;;chr1:138846047..138846074,-!p5@Nr5a2!0.68!4.13!Nr5a2;;chr9:74709682..74709691,+!p3@Onecut1!0.68!3.84!Onecut1;;chr4:154010409..154010466,-!p2@Prdm16!0.67!9.45!Prdm16;;chr11:121380640..121380655,-!p1@Zfp750!0.67!6.50!Zfp750;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.66!40.46!Zfp706;;chr18:11052456..11052477,+!p3@Gata6!0.66!12.40!Gata6;;chr8:87425854..87425891,+!p1@Klf1!0.66!3.54!Klf1;;chr2:103143315..103143328,-!p2@Ehf!0.66!3.54!Ehf;;chr6:30908793..30908815,-!p1@Klf14!0.66!3.54!Klf14;;chr13:48758276..48758291,+!p1@Barx1!0.66!3.54!Barx1;;chr5:102094266..102094273,-!p3@Nkx6-1!0.66!3.54!Nkx6-1;;chr2:115888250..115888298,-!p10@Meis2!0.65!4.43!Meis2;;chr11:112643496..112643562,+!p1@Sox9!0.64!148.83!Sox9;;chr18:80904854..80904919,-!p2@Nfatc1!0.64!47.54!Nfatc1;;chr18:11052606..11052633,+!p4@Gata6!0.64!9.45!Gata6;;chr11:98826178..98826197,+!p7@Rara!0.63!3.25!Rara;;chr2:147871948..147871977,-!p3@Foxa2!0.63!3.25!Foxa2;;chr2:147872074..147872079,-!p4@Foxa2!0.63!3.25!Foxa2;;chr2:147872790..147872821,-!p2@Foxa2!0.63!3.25!Foxa2;;chr13:48758358..48758415,+!p2@Barx1!0.63!3.25!Barx1;;chr2:168415815..168415872,-!p1@Nfatc2!0.62!20.38!Nfatc2;;chr18:69681439..69681456,+!p7@Tcf4!0.62!9.15!Tcf4;;chr7:17642053..17642066,-!p2@Hif3a!0.62!4.72!Hif3a;;chr8:124806048..124806094,+!p1@Zfpm1!0.61!33.96!Zfpm1;;chr18:11052485..11052508,+!p2@Gata6!0.60!9.74!Gata6;;chr1:138845748..138845766,-!p4@Nr5a2!0.60!4.13!Nr5a2;;chr1:138846117..138846129,-!p8@Nr5a2!0.60!2.95!Nr5a2;;chr19:55972767..55972779,+!p20@Tcf7l2!0.60!2.95!Tcf7l2;;chr7:17642177..17642223,-!p3@Hif3a!0.60!2.95!Hif3a;;chr11:5420655..5420659,+!p3@Xbp1!0.60!2.95!Xbp1;;chr4:154010918..154010931,-!p1@Prdm16!0.59!9.74!Prdm16;;chr6:52154386..52154407,-!p2@Hoxa5!0.59!3.84!Hoxa5;;chr11:5420973..5420992,+!p1@Xbp1!0.58!362.93!Xbp1;;chr14:22807083..22807104,-!p1@Zfp503!0.58!60.83!Zfp503;;chr6:72849280..72849297,-!p6@Kcmf1!0.57!5.91!Kcmf1;;chr2:91864661..91864686,-!p1@Creb3l1!0.56!71.76!Creb3l1;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.56!12.40!Ppp1r13l;;chr13:72766250..72766273,+!p1@Irx2!0.56!4.43!Irx2;;chr9:74714281..74714296,+!p5@Onecut1!0.56!2.66!Onecut1;;chr7:108966820..108966835,+!p1@Phox2a!0.56!2.66!Phox2a;;chr10:51397572..51397595,+!p1@Rfx6!0.56!2.66!Rfx6;;chr14:64562503..64562524,+!p1@Sox7!0.55!18.60!Sox7;;chr14:56443806..56443848,+!p1@Nfatc4!0.55!5.91!Nfatc4;;chr11:121380594..121380609,-!p2@Zfp750!0.55!5.02!Zfp750;;chr2:104966766..104966786,+!p1@Wt1!0.55!4.43!Wt1;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.54!96.27!Zfp706;;chr10:119913310..119913366,-!p1@Hmga2!0.54!24.51!Hmga2;;chr14:65977498..65977528,+!p1@Zfp395!0.54!20.67!Zfp395;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.54!3.54!Hoxb2;;chr6:15135639..15135655,+!p9@Foxp2!0.54!3.25!Foxp2;;chr7:17642018..17642045,-!p4@Hif3a!0.54!2.95!Hif3a;;chr7:148513409..148513455,-!p2@Deaf1!0.53!13.88!Deaf1;;chr1:93698030..93698064,+!p1@Twist2!0.53!5.61!Twist2;;chr2:151969288..151969294,+!p1@Tcf15!0.53!4.13!Tcf15;;chr5:115421065..115421088,-!p1@Hnf1a!0.53!2.36!Hnf1a;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.53!2.36!Ppard;;chr2:91864300..91864379,-!p2@Creb3l1!0.52!7.97!Creb3l1;;chr2:56976543..56976558,-!p2@Nr4a2!0.52!6.20!Nr4a2;;chr6:90412608..90412630,+!p2@Klf15!0.52!5.61!Klf15;;chr14:22807216..22807231,-!p3@Zfp503!0.52!4.43!Zfp503;;chr15:103085660..103085681,-!p1@Nfe2!0.52!3.84!Nfe2;;chr11:96145450..96145517,+!p2@Hoxb7!0.52!3.84!Hoxb7;;chr18:74375772..74375799,+!p2@Cxxc1!0.51!7.97!Cxxc1;;chr15:102865088..102865107,+!p1@Hoxc4!0.51!3.25!Hoxc4;;chr1:191994550..191994623,-!p1@Prox1!0.50!19.49!Prox1;;chr11:85646303..85646329,+!p1@Tbx2!0.50!18.60!Tbx2;;chr5:104121453..104121479,+!p4@Aff1!0.50!12.70!Aff1;;chr8:123608252..123608268,+!p1@Foxf1a!0.50!3.54!Foxf1a;;chr13:72101161..72101177,-!p2@Irx1!0.50!3.25!Irx1;;chr16:4594740..4594759,+!p1@Glis2!0.49!31.30!Glis2;;chr11:74981654..74981658,-!p1@Hic1!0.49!10.63!Hic1;;chr19:5560570..5560582,-!p2@Ovol1!0.49!2.07!Ovol1;;chr17:26978409..26978442,-!p1@Nkx2-5!0.49!2.07!Nkx2-5;;chr5:144951136..144951139,+!p2@Bhlha15!0.49!2.07!Bhlha15;;chr4:13678723..13678739,+!p10@Runx1t1!0.49!2.07!Runx1t1;;chr2:104966874..104966907,+!p2@Wt1!0.49!2.07!Wt1;;chr2:104966662..104966673,+!p4@Wt1!0.49!2.07!Wt1;;chr18:7004715..7004731,-!p1@Mkx!0.48!5.91!Mkx;;chr19:10315252..10315266,-!p2@Gm98!0.48!3.54!Gm98;;chr4:122911056..122911065,+!p2@Heyl!0.48!3.54!Heyl;;chr15:75578637..75578669,-!p2@Mafa!0.48!2.36!Mafa;;chr19:28754692..28754757,-!p1@Glis3!0.47!10.63!Glis3;;chr17:3557718..3557733,-!p2@Tfb1m!0.47!6.79!Tfb1m;;chr12:9581284..9581303,+!p2@Osr1!0.47!4.43!Osr1;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.47!3.84!Hoxb2;;chr19:25746898..25746910,+!p1@Dmrt2!0.47!3.25!Dmrt2;;chr1:140739014..140739032,-!p1@Lhx9!0.47!2.66!Lhx9;;chr3:30408384..30408431,-!p4@Mecom!0.47!2.66!Mecom;;chr11:106128936..106128955,-!p4@Smarcd2!0.47!2.36!Smarcd2;;chr15:61817095..61817111,+!p1@Myc!0.46!157.69!Myc;;chr7:144506077..144506128,-!p1@Ebf3!0.46!5.32!Ebf3;;chr12:113916993..113917009,+!p2@Zbtb42!0.46!3.84!Zbtb42;;chr2:91864449..91864492,-!p3@Creb3l1!0.46!3.54!Creb3l1;;chr15:78994907..78994926,-!p1@Sox10!0.45!5.91!Sox10;;chr2:115891427..115891441,-!p4@Meis2!0.45!4.72!Meis2;;chr7:6683123..6683142,-!p1@Peg3!0.44!131.41!Peg3;;chr2:181406327..181406350,-!p1@Sox18!0.44!78.55!Sox18;;chr6:86475924..86475935,-!p2@Pcbp1!0.44!41.34!Pcbp1;;chr14:79915425..79915501,+!p1@Elf1!0.44!21.85!Elf1;;chr1:186556323..186556370,-!p2@Hlx!0.44!6.20!Hlx;;chr1:186556375..186556404,-!p3@Hlx!0.44!3.84!Hlx;;chr11:101755669..101755686,-!p1@Meox1!0.44!3.84!Meox1;;chr2:28477452..28477483,-!p1@Gfi1b!0.44!2.36!Gfi1b;;chr15:102865131..102865151,+!p2@Hoxc4!0.44!2.07!Hoxc4;;chr14:63864337..63864381,-!p6@Gata4!0.44!1.77!Gata4;;chr1:6724908..6724955,+!p2@St18!0.44!1.77!St18;;chr2:104966933..104966966,+!p3@Wt1!0.44!1.77!Wt1;;chr2:74550015..74550057,+!p2@Hoxd3!0.44!1.77!Hoxd3;;chr11:84339016..84339044,-!p1@Lhx1!0.44!1.77!Lhx1;;chr5:29805118..29805137,-!p1@Mnx1!0.44!1.77!Mnx1;;chr19:45225276..45225304,+!p2@Tlx1!0.44!1.77!Tlx1;;chr2:152758901..152758925,-!p1@Foxs1!0.43!10.34!Foxs1;;chr4:99322820..99322845,+!p1@Foxd3!0.43!2.36!Foxd3;;chr9:63605740..63605771,-!p1@Smad3!0.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Line 41: Line 44:
|is_a=EFO:0002091;;FF:0011258
|is_a=EFO:0002091;;FF:0011258
|is_obsolete=
|is_obsolete=
|library_id=CNhs10599
|library_id_phase_based=2:CNhs10599
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1558
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1558
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm10.nobarcode.bam
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm10.nobarcode.ctss.bed.gz
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm9.nobarcode.bam
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm9.ctss.bed.gz
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm9.nobarcode.rdna.fa.gz
|name=pancreas, embryo E17
|name=pancreas, embryo E17
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10599,LSID654,release008,COMPLETED
|profile_hcage=CNhs10599,LSID654,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|repeat_enrich_byfamily=0.246311075995982,0,0,0,0,0,-0.441621670198561,0,0,0,0,0.309500751655637,0,0,0,0,0,0,0.00966866089026247,0,0,0,0,0,0,0.486729812178725,0,0,0,0,0,0,-0.282902824108042,0,0,0,0,0,-0.209322725495826,0,-0.105729744005321,0.244863580747083,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.029333700415578,0,-0.0299155595643682,0,0,-0.00169058422863344,-0.159398064554041,-0.035130689123397,-0.158091042771083,-0.0313476967041085,0,-0.0780086007519514,-0.0179958865105151,0.0688151653669086,0,0,-0.0593467371293889,-0.0961223904473507,0.204488325066418,-0.0788315948399074,0,0,0,0,0,0,0.0740839992844813,0.314360665554823,0.0964654920763782,0,0,0,0,0
|rna_box=45
|rna_box=45
|rna_catalog_number=
|rna_catalog_number=
Line 61: Line 76:
|rna_weight_ug=
|rna_weight_ug=
|sample_age=
|sample_age=
|sample_category=developmental
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 81: Line 97:
|top_motifs=RXRA_VDR{dimer}:2.5833058572;ATF6:2.38476710514;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.91166093051;GCM1,2:1.82411871207;EN1,2:1.74618426627;MYOD1:1.68831878989;NR1H4:1.53803581165;SNAI1..3:1.53257520489;PAX1,9:1.46675710139;ZNF238:1.4509273026;XCPE1{core}:1.44365891338;FOXA2:1.17924733658;ZEB1:1.1545682046;ESR1:1.15260077773;TFAP4:1.15201434965;PAX6:1.14064412077;RBPJ:1.12345815415;LMO2:1.12147948373;TLX2:1.10742309575;bHLH_family:1.08746291863;TAL1_TCF{3,4,12}:1.06289860143;ZNF423:1.05670828397;ZNF148:0.950639593779;TOPORS:0.907199363708;TFCP2:0.906847913827;SPZ1:0.906764939136;TLX1..3_NFIC{dimer}:0.82809723176;ZIC1..3:0.811301159331;HIF1A:0.810493881405;GLI1..3:0.793771705935;TBP:0.788048230762;ALX4:0.773725251842;GZF1:0.770808943621;NFY{A,B,C}:0.738098822728;STAT1,3:0.693228980761;HES1:0.680437391402;NR5A1,2:0.68010880676;HNF1A:0.672528739985;PPARG:0.624507457015;PDX1:0.621813895593;FOX{F1,F2,J1}:0.565909108474;MYBL2:0.520511799002;GATA6:0.510799804574;SP1:0.493713040253;FOXM1:0.379166054265;RXR{A,B,G}:0.374189841736;BACH2:0.357218052015;MTF1:0.346731448984;HSF1,2:0.340164888304;ZNF143:0.339249842764;PATZ1:0.334946648314;NFIX:0.323167093492;EP300:0.319482770229;CEBPA,B_DDIT3:0.306375403751;HBP1_HMGB_SSRP1_UBTF:0.28895170523;GFI1:0.268913851124;SOX{8,9,10}:0.264686465301;MAZ:0.254916686364;TP53:0.247280078933;ESRRA:0.240800450672;ONECUT1,2:0.24068385619;LEF1_TCF7_TCF7L1,2:0.239437926229;HOX{A5,B5}:0.233729943545;HAND1,2:0.219363713643;ELF1,2,4:0.208289600686;SRF:0.191181744012;GTF2A1,2:0.190368705471;HMX1:0.189485537213;DBP:0.188257559427;MAFB:0.187987124152;SMAD1..7,9:0.185367147775;IKZF1:0.177365532928;TEAD1:0.151061365853;YY1:0.145924430385;STAT5{A,B}:0.145702679727;ETS1,2:0.117046510303;GTF2I:0.102822445254;HIC1:0.0990948605053;NFKB1_REL_RELA:0.0944929833302;SOX17:0.0603761434959;NKX3-2:0.0553275983205;NANOG:0.0453490792181;ARID5B:0.0251905164772;RREB1:0.0207156746119;TGIF1:7.42114810355e-05;ADNP_IRX_SIX_ZHX:-0.0190782582311;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0224438692445;NANOG{mouse}:-0.0309290489197;ATF2:-0.0520943762013;POU2F1..3:-0.0650635876124;RFX1:-0.0777064963403;NRF1:-0.091927464608;HLF:-0.0988554529632;FOXL1:-0.104583905147;NFE2L2:-0.107628212128;NHLH1,2:-0.107762775404;ELK1,4_GABP{A,B1}:-0.109190531167;PBX1:-0.117200560332;HNF4A_NR2F1,2:-0.120883895697;T:-0.141922746694;HOX{A4,D4}:-0.14711734121;AR:-0.156094805548;MYFfamily:-0.19106601728;REST:-0.194072247302;TFAP2{A,C}:-0.194328241803;TFAP2B:-0.203091091992;ATF4:-0.211887545233;MEF2{A,B,C,D}:-0.213237817466;KLF4:-0.214097885563;MED-1{core}:-0.224412996937;FOX{D1,D2}:-0.233641004727;E2F1..5:-0.245484736063;FOS_FOS{B,L1}_JUN{B,D}:-0.247837017718;ZBTB6:-0.248826501331;PAX5:-0.250095702471;HOXA9_MEIS1:-0.25529065532;RUNX1..3:-0.270279203053;HMGA1,2:-0.280678364474;MTE{core}:-0.282264017255;CRX:-0.310272541611;SPIB:-0.315497362774;FOSL2:-0.321379010206;LHX3,4:-0.337756587581;GFI1B:-0.337848427754;NFE2:-0.356156716653;SOX2:-0.371120105133;PAX8:-0.395046040449;PRDM1:-0.399811145357;SOX5:-0.40029597873;FOXD3:-0.403144515809;TBX4,5:-0.404511870901;GATA4:-0.423393309051;FOXO1,3,4:-0.43275559727;NKX2-3_NKX2-5:-0.43280054609;UFEwm:-0.434057465215;BREu{core}:-0.434725991366;MYB:-0.463511264744;AHR_ARNT_ARNT2:-0.465084940532;NR6A1:-0.485103234959;STAT2,4,6:-0.485237550776;IKZF2:-0.501281902525;PRRX1,2:-0.525852118126;POU6F1:-0.531870870706;ATF5_CREB3:-0.535011652376;NFIL3:-0.547449826803;CDX1,2,4:-0.551245188732;EBF1:-0.5549888732;RORA:-0.557795133757;JUN:-0.566334413291;CUX2:-0.57778209184;SPI1:-0.579271298698;MZF1:-0.584764571658;NFATC1..3:-0.617892190847;NKX3-1:-0.628115712192;ALX1:-0.654383271865;POU1F1:-0.654972659862;TFDP1:-0.662086788646;EGR1..3:-0.680464019373;AIRE:-0.688376699257;ZFP161:-0.700031696104;ZNF384:-0.711767415557;OCT4_SOX2{dimer}:-0.712650016017;CREB1:-0.727788758542;PAX2:-0.734367057038;VSX1,2:-0.74575256315;TEF:-0.764533152785;CDC5L:-0.76521802281;RFX2..5_RFXANK_RFXAP:-0.766407515955;IRF1,2:-0.808632696587;IRF7:-0.910475337591;NR3C1:-0.93897955144;NKX2-1,4:-0.963166771646;POU5F1:-1.04240715916;NFE2L1:-1.09798268535;DMAP1_NCOR{1,2}_SMARC:-1.1829217733;FOXN1:-1.20144344014;NKX2-2,8:-1.22379579743;FOX{I1,J2}:-1.22936970376;EVI1:-1.24411919118;PITX1..3:-1.24786146484;BPTF:-1.26419443068;ZBTB16:-1.27605830079;POU3F1..4:-1.32109625682;FOXQ1:-1.36443436709;SREBF1,2:-1.38739016806;FOXP1:-1.67797946995;PAX4:-1.68661482638;FOXP3:-2.02581563419;NKX6-1,2:-2.31747427855
|top_motifs=RXRA_VDR{dimer}:2.5833058572;ATF6:2.38476710514;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.91166093051;GCM1,2:1.82411871207;EN1,2:1.74618426627;MYOD1:1.68831878989;NR1H4:1.53803581165;SNAI1..3:1.53257520489;PAX1,9:1.46675710139;ZNF238:1.4509273026;XCPE1{core}:1.44365891338;FOXA2:1.17924733658;ZEB1:1.1545682046;ESR1:1.15260077773;TFAP4:1.15201434965;PAX6:1.14064412077;RBPJ:1.12345815415;LMO2:1.12147948373;TLX2:1.10742309575;bHLH_family:1.08746291863;TAL1_TCF{3,4,12}:1.06289860143;ZNF423:1.05670828397;ZNF148:0.950639593779;TOPORS:0.907199363708;TFCP2:0.906847913827;SPZ1:0.906764939136;TLX1..3_NFIC{dimer}:0.82809723176;ZIC1..3:0.811301159331;HIF1A:0.810493881405;GLI1..3:0.793771705935;TBP:0.788048230762;ALX4:0.773725251842;GZF1:0.770808943621;NFY{A,B,C}:0.738098822728;STAT1,3:0.693228980761;HES1:0.680437391402;NR5A1,2:0.68010880676;HNF1A:0.672528739985;PPARG:0.624507457015;PDX1:0.621813895593;FOX{F1,F2,J1}:0.565909108474;MYBL2:0.520511799002;GATA6:0.510799804574;SP1:0.493713040253;FOXM1:0.379166054265;RXR{A,B,G}:0.374189841736;BACH2:0.357218052015;MTF1:0.346731448984;HSF1,2:0.340164888304;ZNF143:0.339249842764;PATZ1:0.334946648314;NFIX:0.323167093492;EP300:0.319482770229;CEBPA,B_DDIT3:0.306375403751;HBP1_HMGB_SSRP1_UBTF:0.28895170523;GFI1:0.268913851124;SOX{8,9,10}:0.264686465301;MAZ:0.254916686364;TP53:0.247280078933;ESRRA:0.240800450672;ONECUT1,2:0.24068385619;LEF1_TCF7_TCF7L1,2:0.239437926229;HOX{A5,B5}:0.233729943545;HAND1,2:0.219363713643;ELF1,2,4:0.208289600686;SRF:0.191181744012;GTF2A1,2:0.190368705471;HMX1:0.189485537213;DBP:0.188257559427;MAFB:0.187987124152;SMAD1..7,9:0.185367147775;IKZF1:0.177365532928;TEAD1:0.151061365853;YY1:0.145924430385;STAT5{A,B}:0.145702679727;ETS1,2:0.117046510303;GTF2I:0.102822445254;HIC1:0.0990948605053;NFKB1_REL_RELA:0.0944929833302;SOX17:0.0603761434959;NKX3-2:0.0553275983205;NANOG:0.0453490792181;ARID5B:0.0251905164772;RREB1:0.0207156746119;TGIF1:7.42114810355e-05;ADNP_IRX_SIX_ZHX:-0.0190782582311;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0224438692445;NANOG{mouse}:-0.0309290489197;ATF2:-0.0520943762013;POU2F1..3:-0.0650635876124;RFX1:-0.0777064963403;NRF1:-0.091927464608;HLF:-0.0988554529632;FOXL1:-0.104583905147;NFE2L2:-0.107628212128;NHLH1,2:-0.107762775404;ELK1,4_GABP{A,B1}:-0.109190531167;PBX1:-0.117200560332;HNF4A_NR2F1,2:-0.120883895697;T:-0.141922746694;HOX{A4,D4}:-0.14711734121;AR:-0.156094805548;MYFfamily:-0.19106601728;REST:-0.194072247302;TFAP2{A,C}:-0.194328241803;TFAP2B:-0.203091091992;ATF4:-0.211887545233;MEF2{A,B,C,D}:-0.213237817466;KLF4:-0.214097885563;MED-1{core}:-0.224412996937;FOX{D1,D2}:-0.233641004727;E2F1..5:-0.245484736063;FOS_FOS{B,L1}_JUN{B,D}:-0.247837017718;ZBTB6:-0.248826501331;PAX5:-0.250095702471;HOXA9_MEIS1:-0.25529065532;RUNX1..3:-0.270279203053;HMGA1,2:-0.280678364474;MTE{core}:-0.282264017255;CRX:-0.310272541611;SPIB:-0.315497362774;FOSL2:-0.321379010206;LHX3,4:-0.337756587581;GFI1B:-0.337848427754;NFE2:-0.356156716653;SOX2:-0.371120105133;PAX8:-0.395046040449;PRDM1:-0.399811145357;SOX5:-0.40029597873;FOXD3:-0.403144515809;TBX4,5:-0.404511870901;GATA4:-0.423393309051;FOXO1,3,4:-0.43275559727;NKX2-3_NKX2-5:-0.43280054609;UFEwm:-0.434057465215;BREu{core}:-0.434725991366;MYB:-0.463511264744;AHR_ARNT_ARNT2:-0.465084940532;NR6A1:-0.485103234959;STAT2,4,6:-0.485237550776;IKZF2:-0.501281902525;PRRX1,2:-0.525852118126;POU6F1:-0.531870870706;ATF5_CREB3:-0.535011652376;NFIL3:-0.547449826803;CDX1,2,4:-0.551245188732;EBF1:-0.5549888732;RORA:-0.557795133757;JUN:-0.566334413291;CUX2:-0.57778209184;SPI1:-0.579271298698;MZF1:-0.584764571658;NFATC1..3:-0.617892190847;NKX3-1:-0.628115712192;ALX1:-0.654383271865;POU1F1:-0.654972659862;TFDP1:-0.662086788646;EGR1..3:-0.680464019373;AIRE:-0.688376699257;ZFP161:-0.700031696104;ZNF384:-0.711767415557;OCT4_SOX2{dimer}:-0.712650016017;CREB1:-0.727788758542;PAX2:-0.734367057038;VSX1,2:-0.74575256315;TEF:-0.764533152785;CDC5L:-0.76521802281;RFX2..5_RFXANK_RFXAP:-0.766407515955;IRF1,2:-0.808632696587;IRF7:-0.910475337591;NR3C1:-0.93897955144;NKX2-1,4:-0.963166771646;POU5F1:-1.04240715916;NFE2L1:-1.09798268535;DMAP1_NCOR{1,2}_SMARC:-1.1829217733;FOXN1:-1.20144344014;NKX2-2,8:-1.22379579743;FOX{I1,J2}:-1.22936970376;EVI1:-1.24411919118;PITX1..3:-1.24786146484;BPTF:-1.26419443068;ZBTB16:-1.27605830079;POU3F1..4:-1.32109625682;FOXQ1:-1.36443436709;SREBF1,2:-1.38739016806;FOXP1:-1.67797946995;PAX4:-1.68661482638;FOXP3:-2.02581563419;NKX6-1,2:-2.31747427855
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1558-45G3;search_select_hide=table117:1558-45G3
}}
}}

Latest revision as of 19:08, 4 June 2020


Name:pancreas, embryo E17
Species:Mouse (Mus musculus)
Library ID:CNhs10599
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage17 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004945
CollapseLibrary accession numbers

Library idMethodExp. accession idRun accession id
CNhs10599 CAGE DRX009058 DRR009932
CollapseAccession ID Mm9

Library idBAMCTSS
CNhs10599 DRZ001357 DRZ002740
CollapseAccession ID Mm10

Library idBAMCTSS
CNhs10599 DRZ012707 DRZ014090
Download raw sequence, BAM & CTSS
CollapseMm9
FastaBAMCTSS
downloaddownloaddonwload
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BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

CNhs10599



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10599



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10599



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10599


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011258 (mouse pancreas- embryo E17 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)