FFCP PHASE1:Hg19::chr12:28116255..28116266,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:28116255..28116266,- | |||
|coexpression_cluster_id=C812 | |coexpression_cluster_id=C812 | ||
|description=CAGE_peak_at_chr12:28116255..28116266,- | |description=CAGE_peak_at_chr12:28116255..28116266,- | ||
|id=chr12:28116255..28116266,- | |id=chr12:28116255..28116266,- | ||
|ontology_enrichment_celltype=CL:0000244;9.95e-31;4!CL:0000731;9.95e-31;4!CL:0002166;1.24e-18;3!CL:0002368;1.74e-16;13!CL:0002076;2.07e-14;42!CL:0002159;3.69e-09;14!CL:0000317;4.85e-08;2!CL:1000448;4.85e-08;2!CL:0002308;4.85e-08;2!CL:0002140;4.85e-08;2!CL:0002202;8.10e-07;9!CL:0002632;8.10e-07;9 | |ontology_enrichment_celltype=CL:0002076!7.99e-17!43;CL:0002368!2.80e-16!13;CL:0000244!1.57e-12!4;CL:0000731!1.57e-12!4;CL:0000223!5.70e-11!59;CL:0000066!2.76e-10!254;CL:0002159!4.26e-10!13;CL:0002202!9.93e-08!9;CL:0002632!9.93e-08!9;CL:0000317!5.95e-07!2;CL:1000448!5.95e-07!2;CL:0002308!5.95e-07!2;CL:0002140!5.95e-07!2 | ||
| | |ontology_enrichment_celltype_v019=CL:0000244;9.95e-31;4!CL:0000731;9.95e-31;4!CL:0002166;1.24e-18;3!CL:0002368;1.74e-16;13!CL:0002076;2.07e-14;42!CL:0002159;3.69e-09;14!CL:0000317;4.85e-08;2!CL:1000448;4.85e-08;2!CL:0002308;4.85e-08;2!CL:0002140;4.85e-08;2!CL:0002202;8.10e-07;9!CL:0002632;8.10e-07;9 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0000244,1.05e-30,4;CL:0000731,1.05e-30,4;CL:0002166,1.36e-18,3;CL:0002368,1.55e-16,13;CL:0002076,6.27e-15,42;CL:0000223,1.15e-10,58;CL:0002159,3.64e-09,14;CL:0000317,4.38e-08,2;CL:1000448,4.38e-08,2;CL:0002308,4.38e-08,2;CL:0002140,4.38e-08,2;CL:0000066,2.28e-07,253;CL:0002202,8.84e-07,9;CL:0002632,8.84e-07,9 | ||
|ontology_enrichment_uberon=UBERON:0000365;9.79e-25;5!UBERON:0005910;9.84e-21;6!UBERON:0000486;3.57e-18;12!UBERON:0001708;3.15e-14;4!UBERON:0008895;3.15e-14;4!UBERON:0011159;1.42e-11;5!UBERON:0002419;4.85e-08;2!UBERON:0007771;4.85e-08;2!UBERON:0003297;4.85e-08;2!UBERON:0001821;4.85e-08;2!UBERON:0003487;4.85e-08;2!UBERON:0001820;4.85e-08;2!UBERON:0005911;2.97e-07;36 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!2.75e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!1.97e-14!5;UBERON:0005910!5.92e-12!6;UBERON:0004119!1.62e-10!169;UBERON:0000925!1.62e-10!169;UBERON:0006595!1.62e-10!169;UBERON:0007196!1.06e-08!14;UBERON:0001558!1.06e-08!14;UBERON:0005911!3.55e-08!82;UBERON:0002419!5.95e-07!2;UBERON:0007771!5.95e-07!2;UBERON:0003297!5.95e-07!2;UBERON:0001821!5.95e-07!2;UBERON:0003487!5.95e-07!2;UBERON:0001820!5.95e-07!2;UBERON:0005089!5.95e-07!2;UBERON:0005088!5.95e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;9.79e-25;5!UBERON:0005910;9.84e-21;6!UBERON:0000486;3.57e-18;12!UBERON:0001708;3.15e-14;4!UBERON:0008895;3.15e-14;4!UBERON:0011159;1.42e-11;5!UBERON:0002419;4.85e-08;2!UBERON:0007771;4.85e-08;2!UBERON:0003297;4.85e-08;2!UBERON:0001821;4.85e-08;2!UBERON:0003487;4.85e-08;2!UBERON:0001820;4.85e-08;2!UBERON:0005911;2.97e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.02e-24,5;UBERON:0005910,1.02e-20,6;UBERON:0001708,3.37e-14,4;UBERON:0008895,3.37e-14,4;UBERON:0011159,1.50e-11,5;UBERON:0010188,8.86e-10,6;UBERON:0002539,8.86e-10,6;UBERON:0008816,8.86e-10,6;UBERON:0002419,4.38e-08,2;UBERON:0007771,4.38e-08,2;UBERON:0003297,4.38e-08,2;UBERON:0001821,4.38e-08,2;UBERON:0003487,4.38e-08,2;UBERON:0001820,4.38e-08,2;UBERON:0005089,4.38e-08,2;UBERON:0005088,4.38e-08,2;UBERON:0004119,4.14e-07,160;UBERON:0000925,4.14e-07,160;UBERON:0006595,4.14e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600952235626387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45471508531751,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.904760751704678,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01578553838631,1.41775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0,0,10.4263364557708,0.460404944679482,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,2.60024098414608,0,0,0,0,0,0,0,0,0,0.661139661443912,1.53752053892085,1.53135254993501,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731140468893853,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.288666338176536,0,2.17781969722645,0,3.01353760869861,8.42357378338128,0.886860307073351,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,1.44999915086959,0.341380344856499,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0.213452994739353,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0.328370082997356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1796972334774,0.917142992608395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0.333694205676207,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0.45178432815584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600952235626387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45471508531751,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.904760751704678,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01578553838631,1.41775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0,0,10.4263364557708,0.460404944679482,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,2.60024098414608,0,0,0,0,0,0,0,0,0,0.661139661443912,1.53752053892085,1.53135254993501,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731140468893853,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.288666338176536,0,2.17781969722645,0,3.01353760869861,8.42357378338128,0.886860307073351,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,1.44999915086959,0.341380344856499,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0.213452994739353,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0.328370082997356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1796972334774,0.917142992608395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0.333694205676207,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0.45178432815584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:28116255..28116266,- | |short_description=p@chr12:28116255..28116266,- | ||
}} | }} |
Latest revision as of 07:55, 24 July 2015
Short description: | p@chr12:28116255..28116266, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:28116255..28116266, - |
Coexpression cluster: | C812_Prostate_Urothelial_Mallassezderived_Sebocyte_Keratinocyte_Gingival_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 1.05e-30 | 4 |
urothelial cell | 1.05e-30 | 4 |
epithelial cell of Malassez | 1.36e-18 | 3 |
respiratory epithelial cell | 1.55e-16 | 13 |
endo-epithelial cell | 6.27e-15 | 42 |
endodermal cell | 1.15e-10 | 58 |
general ecto-epithelial cell | 3.64e-09 | 14 |
sebum secreting cell | 4.38e-08 | 2 |
epithelial cell of sweat gland | 4.38e-08 | 2 |
epithelial cell of skin gland | 4.38e-08 | 2 |
acinar cell of sebaceous gland | 4.38e-08 | 2 |
epithelial cell | 2.28e-07 | 253 |
epithelial cell of tracheobronchial tree | 8.84e-07 | 9 |
epithelial cell of lower respiratory tract | 8.84e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.02e-24 | 5 |
transitional epithelium | 1.02e-20 | 6 |
jaw skeleton | 3.37e-14 | 4 |
splanchnocranium | 3.37e-14 | 4 |
primary subdivision of cranial skeletal system | 1.50e-11 | 5 |
protuberance | 8.86e-10 | 6 |
pharyngeal arch | 8.86e-10 | 6 |
embryonic head | 8.86e-10 | 6 |
skin gland | 4.38e-08 | 2 |
epidermis gland | 4.38e-08 | 2 |
gland of integumental system | 4.38e-08 | 2 |
sebaceous gland | 4.38e-08 | 2 |
skin sebaceous gland | 4.38e-08 | 2 |
sweat gland | 4.38e-08 | 2 |
sweat gland placode | 4.38e-08 | 2 |
sebaceous gland placode | 4.38e-08 | 2 |
endoderm-derived structure | 4.14e-07 | 160 |
endoderm | 4.14e-07 | 160 |
presumptive endoderm | 4.14e-07 | 160 |