FFCP PHASE1:Hg19::chr1:152783824..152783828,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:152783824..152783828,+ | |||
|coexpression_cluster_id=C202 | |coexpression_cluster_id=C202 | ||
|description=CAGE_peak_at_chr1:152783824..152783828,+ | |description=CAGE_peak_at_chr1:152783824..152783828,+ | ||
|id=chr1:152783824..152783828,+ | |id=chr1:152783824..152783828,+ | ||
|ontology_enrichment_celltype=CL:0000312;5.66e-33;5!CL:0000622;6.67e-33;5!CL:0000362;3.62e-32;9!CL:0000240;1.28e-27;6!CL:0000311;1.28e-27;6!CL:0000079;1.28e-27;6!CL:0000237;1.28e-27;6!CL:0000154;1.47e-27;6!CL:0002623;4.58e-25;3!CL:0002159;7.33e-21;14!CL:0000150;1.25e-18;9!CL:0000317;3.13e-10;2!CL:1000448;3.13e-10;2!CL:0002308;3.13e-10;2!CL:0002140;3.13e-10;2!CL:0002077;7.14e-09;34 | |ontology_enrichment_celltype=CL:0002159!2.22e-16!13;CL:0000622!4.39e-15!5;CL:0002623!1.68e-14!3;CL:0000154!1.39e-12!6;CL:0000240!1.76e-12!6;CL:0000311!1.76e-12!6;CL:0000079!1.76e-12!6;CL:0000237!1.76e-12!6;CL:0000036!1.76e-12!6;CL:0000357!1.76e-12!6;CL:0000114!1.76e-12!6;CL:0000362!1.09e-09!8;CL:0002077!1.73e-09!33;CL:0000312!3.61e-09!5;CL:0000150!2.11e-08!9;CL:0000453!2.23e-08!5;CL:0000080!4.00e-07!6 | ||
| | |ontology_enrichment_celltype_v019=CL:0000312;5.66e-33;5!CL:0000622;6.67e-33;5!CL:0000362;3.62e-32;9!CL:0000240;1.28e-27;6!CL:0000311;1.28e-27;6!CL:0000079;1.28e-27;6!CL:0000237;1.28e-27;6!CL:0000154;1.47e-27;6!CL:0002623;4.58e-25;3!CL:0002159;7.33e-21;14!CL:0000150;1.25e-18;9!CL:0000317;3.13e-10;2!CL:1000448;3.13e-10;2!CL:0002308;3.13e-10;2!CL:0002140;3.13e-10;2!CL:0002077;7.14e-09;34 | ||
|ontology_enrichment_disease=DOID:630;2.47e-19;1!DOID:0050177;2.47e-19;1!DOID:0050427;2.47e-19;1 | |ontology_enrichment_celltype_v019_2=CL:0000312,4.81e-33,5;CL:0000622,8.30e-33,5;CL:0000362,3.34e-32,9;CL:0000240,1.12e-27,6;CL:0000311,1.12e-27,6;CL:0000079,1.12e-27,6;CL:0000237,1.12e-27,6;CL:0000036,1.12e-27,6;CL:0000357,1.12e-27,6;CL:0000114,1.12e-27,6;CL:0000154,1.76e-27,6;CL:0002623,5.50e-25,3;CL:0002159,6.97e-21,14;CL:0000150,1.41e-18,9;CL:0000317,3.27e-10,2;CL:1000448,3.27e-10,2;CL:0002308,3.27e-10,2;CL:0002140,3.27e-10,2;CL:0002077,8.19e-09,34 | ||
|ontology_enrichment_uberon=UBERON:0001003;4.57e-30;15!UBERON:0007376;4.57e-30;15!UBERON:0007029;1.08e-19;1!UBERON:0000989;1.30e-19;1!UBERON:0008811;1.30e-19;1!UBERON:0010371;4.13e-14;31!UBERON:0001044;4.66e-13;6!UBERON:0003293;4.66e-13;6!UBERON:0003294;4.66e-13;6!UBERON:0010047;4.66e-13;6!UBERON:0003408;4.66e-13;6!UBERON:0000167;4.66e-13;6!UBERON:0002199;7.34e-11;46!UBERON:0002416;7.34e-11;46!UBERON:0002419;3.13e-10;2!UBERON:0007771;3.13e-10;2!UBERON:0003297;3.13e-10;2!UBERON:0001821;3.13e-10;2!UBERON:0003487;3.13e-10;2!UBERON:0001820;3.13e-10;2!UBERON:0002097;4.53e-10;41 | |ontology_enrichment_development_v019=CL:0000357;1.28e-27;6!CL:0000114;1.28e-27;6!UBERON:0004874;1.30e-19;1 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;2.47e-19;1!DOID:0050177;2.47e-19;1!DOID:0050427;2.47e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.25e-19,1;DOID:0050177,2.25e-19,1;DOID:0050427,2.25e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0003408!9.01e-11!10;UBERON:0001003!2.74e-08!14;UBERON:0007376!2.74e-08!14;UBERON:0007383!2.74e-08!14;UBERON:0001044!1.84e-07!6;UBERON:0003293!1.84e-07!6;UBERON:0003294!1.84e-07!6;UBERON:0010047!1.84e-07!6;UBERON:0000167!1.84e-07!6;UBERON:0003102!2.48e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;4.57e-30;15!UBERON:0007376;4.57e-30;15!UBERON:0007029;1.08e-19;1!UBERON:0000989;1.30e-19;1!UBERON:0008811;1.30e-19;1!UBERON:0010371;4.13e-14;31!UBERON:0001044;4.66e-13;6!UBERON:0003293;4.66e-13;6!UBERON:0003294;4.66e-13;6!UBERON:0010047;4.66e-13;6!UBERON:0003408;4.66e-13;6!UBERON:0000167;4.66e-13;6!UBERON:0002199;7.34e-11;46!UBERON:0002416;7.34e-11;46!UBERON:0002419;3.13e-10;2!UBERON:0007771;3.13e-10;2!UBERON:0003297;3.13e-10;2!UBERON:0001821;3.13e-10;2!UBERON:0003487;3.13e-10;2!UBERON:0001820;3.13e-10;2!UBERON:0002097;4.53e-10;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,4.31e-30,15;UBERON:0007376,4.31e-30,15;UBERON:0007383,4.31e-30,15;UBERON:0007029,1.08e-19,1;UBERON:0000989,1.30e-19,1;UBERON:0008811,1.30e-19,1;UBERON:0006258,1.30e-19,1;UBERON:0005876,1.30e-19,1;UBERON:0004874,1.30e-19,1;UBERON:0001044,5.11e-13,6;UBERON:0003293,5.11e-13,6;UBERON:0003294,5.11e-13,6;UBERON:0010047,5.11e-13,6;UBERON:0000167,5.11e-13,6;UBERON:0002097,4.11e-11,41;UBERON:0002419,3.27e-10,2;UBERON:0007771,3.27e-10,2;UBERON:0003297,3.27e-10,2;UBERON:0001821,3.27e-10,2;UBERON:0003487,3.27e-10,2;UBERON:0001820,3.27e-10,2;UBERON:0005089,3.27e-10,2;UBERON:0005088,3.27e-10,2;UBERON:0002199,6.53e-10,46;UBERON:0002416,6.53e-10,46;UBERON:0003102,1.29e-08,99;UBERON:0003408,3.50e-08,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.328402357799783,0.472264687882075,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.60951198716227,6.74410519545717,1.70899253099772,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67308493134324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07564790076435,0.123563938946503,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0.999936979274649,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.92422356778589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,1.0243108625637,44.2406183561019,0,0,0,0,0,0,0,0,0,0,0,0,0,19.4284397223656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24397944612263 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.328402357799783,0.472264687882075,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.60951198716227,6.74410519545717,1.70899253099772,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67308493134324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07564790076435,0.123563938946503,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0.999936979274649,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.92422356778589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,1.0243108625637,44.2406183561019,0,0,0,0,0,0,0,0,0,0,0,0,0,19.4284397223656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24397944612263 | ||
|short_description=p@chr1:152783824..152783828,+ | |short_description=p@chr1:152783824..152783828,+ | ||
}} | }} |
Latest revision as of 21:36, 27 July 2015
Short description: | p@chr1:152783824..152783828, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:152783824..152783828, + |
Coexpression cluster: | C202_salivary_skin_penis_tongue_uterus_cervical_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratinocyte | 4.81e-33 | 5 |
acinar cell | 8.30e-33 | 5 |
epidermal cell | 3.34e-32 | 9 |
stratified squamous epithelial cell | 1.12e-27 | 6 |
keratin accumulating cell | 1.12e-27 | 6 |
stratified epithelial cell | 1.12e-27 | 6 |
keratinizing barrier epithelial cell | 1.12e-27 | 6 |
epithelial fate stem cell | 1.12e-27 | 6 |
stratified epithelial stem cell | 1.12e-27 | 6 |
surface ectodermal cell | 1.12e-27 | 6 |
protein secreting cell | 1.76e-27 | 6 |
acinar cell of salivary gland | 5.50e-25 | 3 |
general ecto-epithelial cell | 6.97e-21 | 14 |
glandular epithelial cell | 1.41e-18 | 9 |
sebum secreting cell | 3.27e-10 | 2 |
epithelial cell of sweat gland | 3.27e-10 | 2 |
epithelial cell of skin gland | 3.27e-10 | 2 |
acinar cell of sebaceous gland | 3.27e-10 | 2 |
ecto-epithelial cell | 8.19e-09 | 34 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 4.31e-30 | 15 |
outer epithelium | 4.31e-30 | 15 |
enveloping layer of ectoderm | 4.31e-30 | 15 |
surface | 1.08e-19 | 1 |
penis | 1.30e-19 | 1 |
intromittent organ | 1.30e-19 | 1 |
lateral plate mesenchyme | 1.30e-19 | 1 |
undifferentiated genital tubercle | 1.30e-19 | 1 |
somatopleure | 1.30e-19 | 1 |
saliva-secreting gland | 5.11e-13 | 6 |
gland of oral region | 5.11e-13 | 6 |
gland of foregut | 5.11e-13 | 6 |
oral gland | 5.11e-13 | 6 |
oral cavity | 5.11e-13 | 6 |
skin of body | 4.11e-11 | 41 |
skin gland | 3.27e-10 | 2 |
epidermis gland | 3.27e-10 | 2 |
gland of integumental system | 3.27e-10 | 2 |
sebaceous gland | 3.27e-10 | 2 |
skin sebaceous gland | 3.27e-10 | 2 |
sweat gland | 3.27e-10 | 2 |
sweat gland placode | 3.27e-10 | 2 |
sebaceous gland placode | 3.27e-10 | 2 |
integument | 6.53e-10 | 46 |
integumental system | 6.53e-10 | 46 |
surface structure | 1.29e-08 | 99 |
gland of gut | 3.50e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.25e-19 | 1 |
monogenic disease | 2.25e-19 | 1 |
xeroderma pigmentosum | 2.25e-19 | 1 |