FFCP PHASE1:Hg19::chr1:153113940..153113972,-: Difference between revisions
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|id=chr1:153113940..153113972,-
|short_description=p1@SPRR2C,p2@SPRR2D,p3@SPRR2A
|description=CAGE_peak_1_at_SPRR2C_5end,CAGE_peak_2_at_SPRR2D_5end,CAGE_peak_3_at_SP...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6702,6700,6703 | |EntrezGene=6702,6700,6703 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11263,11261,11264 | |HGNC=11263,11261,11264 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_003062,uc001fbf.2,uc001fbj.2,uc009wnz.2_5end | |||
|cluster_id=chr1:153113940..153113972,- | |||
|coexpression_cluster_id=C197 | |||
|description=CAGE_peak_1_at_SPRR2C_5end,CAGE_peak_2_at_SPRR2D_5end,CAGE_peak_3_at_SPRR2A_5end | |||
|id=chr1:153113940..153113972,- | |||
|ontology_enrichment_celltype=CL:0002166!8.96e-20!3;CL:0002621!4.25e-19!3;CL:0002076!6.19e-10!43;CL:0002328!3.67e-09!3;CL:0002368!1.38e-07!13;CL:1001319!2.66e-07!1;CL:1000600!2.66e-07!1;CL:0002251!4.58e-07!21;CL:0002336!4.61e-07!1;CL:0002261!4.61e-07!1;CL:0002170!4.61e-07!1;CL:0000223!7.42e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002166;5.41e-54;3!CL:0002159;3.58e-12;14!CL:0002621;2.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,4.51e-54,3;CL:0002159,3.45e-12,14;CL:0002621,2.19e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.30e-19;1!UBERON:0008814;1.43e-10;2!UBERON:0010056;1.43e-10;2 | |||
|ontology_enrichment_disease=DOID:3151!2.21e-07!1;DOID:3149!2.21e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!4.25e-19!3;UBERON:0000166!5.63e-18!21;UBERON:0000165!1.67e-16!28;UBERON:0000930!1.67e-16!28;UBERON:0001708!5.72e-15!4;UBERON:0001704!5.72e-15!4;UBERON:0001004!6.67e-14!72;UBERON:0000161!5.79e-13!35;UBERON:0004119!3.12e-10!169;UBERON:0000925!3.12e-10!169;UBERON:0006595!3.12e-10!169;UBERON:0002090!3.84e-10!6;UBERON:0001723!1.30e-09!3;UBERON:0001033!1.30e-09!3;UBERON:0010056!1.30e-09!3;UBERON:0004815!3.67e-09!3;UBERON:0002031!3.67e-09!3;UBERON:0001444!5.20e-09!48;UBERON:0001007!5.75e-09!155;UBERON:0001555!5.75e-09!155;UBERON:0007026!5.75e-09!155;UBERON:0000344!2.45e-08!12;UBERON:0000065!5.81e-08!53;UBERON:0002372!7.03e-08!1;UBERON:0001961!7.03e-08!1;UBERON:0001744!7.03e-08!1;UBERON:0001735!7.03e-08!1;UBERON:0001828!1.80e-07!8;UBERON:0000072!1.89e-07!46;UBERON:0004807!2.62e-07!28;UBERON:0004645!2.66e-07!1;UBERON:0001256!2.66e-07!1;UBERON:0001259!2.66e-07!1;UBERON:0000997!3.40e-07!1;UBERON:0005056!3.40e-07!1;UBERON:0007196!3.89e-07!14;UBERON:0001558!3.89e-07!14;UBERON:0002185!4.49e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001708;9.94e-41;4!UBERON:0008895;9.94e-41;4!UBERON:0011159;9.25e-33;5!UBERON:0001723;3.18e-25;3!UBERON:0001033;3.18e-25;3!UBERON:0002372;1.08e-19;1!UBERON:0001961;1.08e-19;1!UBERON:0001744;1.08e-19;1!UBERON:0001042;1.08e-19;1!UBERON:0001735;1.08e-19;1!UBERON:0011137;2.61e-15;11!UBERON:0010323;2.61e-15;11!UBERON:0000165;8.74e-11;28!UBERON:0000075;9.92e-11;16!UBERON:0006562;1.57e-10;2!UBERON:0003127;3.27e-10;2!UBERON:0000341;3.27e-10;2!UBERON:0001043;2.05e-07;3!UBERON:0001949;2.19e-07;3!UBERON:0004765;8.04e-07;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,8.67e-41,4;UBERON:0008895,8.67e-41,4;UBERON:0011159,8.30e-33,5;UBERON:0010188,1.76e-27,6;UBERON:0002539,1.76e-27,6;UBERON:0008816,1.76e-27,6;UBERON:0001723,2.99e-25,3;UBERON:0001033,2.99e-25,3;UBERON:0010056,2.99e-25,3;UBERON:0008814,4.03e-25,18;UBERON:0002372,1.08e-19,1;UBERON:0001961,1.08e-19,1;UBERON:0001744,1.08e-19,1;UBERON:0001735,1.08e-19,1;UBERON:0000153,3.52e-18,62;UBERON:0007811,3.52e-18,62;UBERON:0001042,4.23e-17,10;UBERON:0009145,4.23e-17,10;UBERON:0006562,1.31e-15,11;UBERON:0000033,1.51e-15,56;UBERON:0010323,2.49e-15,11;UBERON:0000166,1.22e-13,22;UBERON:0011137,3.45e-12,14;UBERON:0000075,9.59e-11,16;UBERON:0000165,1.98e-10,29;UBERON:0000930,1.98e-10,29;UBERON:0003127,2.99e-10,2;UBERON:0000341,3.58e-10,2;UBERON:0001557,2.66e-09,19;UBERON:0003102,1.20e-08,99;UBERON:0000161,1.85e-08,36;UBERON:0001043,2.05e-07,3;UBERON:0009143,2.05e-07,3;UBERON:0001949,2.19e-07,3 | |||
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|short_description=p1@SPRR2C,p2@SPRR2D,p3@SPRR2A | |||
}} | }} |
Latest revision as of 04:40, 17 September 2015
Short description: | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPRR2C_5end, CAGE_peak_2_at_SPRR2D_5end, CAGE_peak_3_at_SPRR2A_5end |
Coexpression cluster: | C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival |
Association with transcript: | 0bp_to_NR_003062, uc001fbf.2, uc001fbj.2, uc009wnz.2_5end |
EntrezGene: | 6702,6700,6703 |
HGNC: | 11261, 11264&submit=Submit 11263, 11261, 11264 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 4.51e-54 | 3 |
general ecto-epithelial cell | 3.45e-12 | 14 |
gingival epithelial cell | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 8.67e-41 | 4 |
splanchnocranium | 8.67e-41 | 4 |
primary subdivision of cranial skeletal system | 8.30e-33 | 5 |
protuberance | 1.76e-27 | 6 |
pharyngeal arch | 1.76e-27 | 6 |
embryonic head | 1.76e-27 | 6 |
tongue | 2.99e-25 | 3 |
gustatory system | 2.99e-25 | 3 |
future tongue | 2.99e-25 | 3 |
pharyngeal arch system | 4.03e-25 | 18 |
tonsil | 1.08e-19 | 1 |
mucosa-associated lymphoid tissue | 1.08e-19 | 1 |
lymphoid tissue | 1.08e-19 | 1 |
tonsillar ring | 1.08e-19 | 1 |
anterior region of body | 3.52e-18 | 62 |
craniocervical region | 3.52e-18 | 62 |
chordate pharynx | 4.23e-17 | 10 |
pharyngeal region of foregut | 4.23e-17 | 10 |
pharynx | 1.31e-15 | 11 |
head | 1.51e-15 | 56 |
cranial skeletal system | 2.49e-15 | 11 |
oral opening | 1.22e-13 | 22 |
axial skeletal system | 3.45e-12 | 14 |
subdivision of skeletal system | 9.59e-11 | 16 |
mouth | 1.98e-10 | 29 |
stomodeum | 1.98e-10 | 29 |
open tracheal system trachea | 2.99e-10 | 2 |
throat | 3.58e-10 | 2 |
upper respiratory tract | 2.66e-09 | 19 |
surface structure | 1.20e-08 | 99 |
orifice | 1.85e-08 | 36 |
esophagus | 2.05e-07 | 3 |
esophageal region | 2.05e-07 | 3 |
gingival epithelium | 2.19e-07 | 3 |