FFCP PHASE1:Hg19::chr12:46897588..46897603,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:46897588..46897603,+ | |||
|description=CAGE_peak_at_chr12:46897588..46897603,+ | |description=CAGE_peak_at_chr12:46897588..46897603,+ | ||
|id=chr12:46897588..46897603,+ | |id=chr12:46897588..46897603,+ | ||
|ontology_enrichment_celltype=CL:0002159!4.99e-25!13;CL:0002621!1.48e-13!3;CL:0002077!2.77e-13!33;CL:0000362!2.93e-13!8;CL:0000240!1.37e-11!6;CL:0000311!1.37e-11!6;CL:0000079!1.37e-11!6;CL:0000237!1.37e-11!6;CL:0000036!1.37e-11!6;CL:0000357!1.37e-11!6;CL:0000114!1.37e-11!6;CL:0000575!1.10e-09!2;CL:0002076!3.76e-09!43;CL:0000312!1.79e-08!5;CL:0000076!6.46e-07!62 | |ontology_enrichment_celltype=CL:0002159!4.99e-25!13;CL:0002621!1.48e-13!3;CL:0002077!2.77e-13!33;CL:0000362!2.93e-13!8;CL:0000240!1.37e-11!6;CL:0000311!1.37e-11!6;CL:0000079!1.37e-11!6;CL:0000237!1.37e-11!6;CL:0000036!1.37e-11!6;CL:0000357!1.37e-11!6;CL:0000114!1.37e-11!6;CL:0000575!1.10e-09!2;CL:0002076!3.76e-09!43;CL:0000312!1.79e-08!5;CL:0000076!6.46e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002159;3.98e-56;14!CL:0000575;2.98e-44;2!CL:0000312;3.33e-40;5!CL:0000240;1.17e-33;6!CL:0000311;1.17e-33;6!CL:0000079;1.17e-33;6!CL:0000237;1.17e-33;6!CL:0002077;1.34e-26;34!CL:0000362;1.01e-22;9!CL:0002231;8.63e-09;3!CL:0002166;1.04e-08;3!CL:0002621;1.04e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.29e-56,14;CL:0000575,2.98e-44,2;CL:0000312,2.91e-40,5;CL:0000240,1.05e-33,6;CL:0000311,1.05e-33,6;CL:0000079,1.05e-33,6;CL:0000237,1.05e-33,6;CL:0000036,1.05e-33,6;CL:0000357,1.05e-33,6;CL:0000114,1.05e-33,6;CL:0002077,1.91e-31,34;CL:0000362,9.35e-23,9;CL:0000221,1.91e-14,72;CL:0000076,6.54e-09,63;CL:0002231,8.96e-09,3;CL:0002166,9.66e-09,3;CL:0002621,1.12e-08,3;CL:0002321,8.32e-07,250;CL:0000066,8.89e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000357;1.17e-33;6!CL:0000114;1.17e-33;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!6.51e-14!95;UBERON:0001949!1.48e-13!3;UBERON:0001003!2.03e-07!14;UBERON:0007376!2.03e-07!14;UBERON:0007383!2.03e-07!14;UBERON:0002097!9.20e-07!40 | |ontology_enrichment_uberon=UBERON:0003102!6.51e-14!95;UBERON:0001949!1.48e-13!3;UBERON:0001003!2.03e-07!14;UBERON:0007376!2.03e-07!14;UBERON:0007383!2.03e-07!14;UBERON:0002097!9.20e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0000964;1.00e-22;4!UBERON:0010409;1.00e-22;4!UBERON:0001003;6.16e-14;15!UBERON:0007376;6.16e-14;15!UBERON:0010371;1.03e-11;31!UBERON:0010313;1.05e-09;10!UBERON:0001949;1.04e-08;3!UBERON:0003102;1.06e-08;50!UBERON:0001801;3.44e-07;14!UBERON:0001708;7.69e-07;4!UBERON:0008895;7.69e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000964,1.00e-22,4;UBERON:0010409,1.00e-22,4;UBERON:0004348,1.00e-22,4;UBERON:0005427,1.00e-22,4;UBERON:0003102,4.51e-14,99;UBERON:0001003,5.89e-14,15;UBERON:0007376,5.89e-14,15;UBERON:0007383,5.89e-14,15;UBERON:0010313,1.05e-09,10;UBERON:0002342,1.05e-09,10;UBERON:0005062,1.05e-09,10;UBERON:0001949,1.12e-08,3;UBERON:0010371,1.56e-07,104;UBERON:0001801,3.44e-07,14;UBERON:0001708,7.27e-07,4;UBERON:0008895,7.27e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0.337552664482532,0,0.252433774244115,0,0,0,0,0,0.966304265816484,2.18196896472668,0.860413786167011,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52425656439839,3.37205259772859,1.80952150340936,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68771405118175,0.283550194484773,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,3.13075362382048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0.107420244868274,0,0,0,0.165284915360978,0,0.893288987462089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34823682632161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432164393964449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,1.53867458491389,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0.414432328326074,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0.337552664482532,0,0.252433774244115,0,0,0,0,0,0.966304265816484,2.18196896472668,0.860413786167011,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52425656439839,3.37205259772859,1.80952150340936,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68771405118175,0.283550194484773,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,3.13075362382048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0.107420244868274,0,0,0,0.165284915360978,0,0.893288987462089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34823682632161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432164393964449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,1.53867458491389,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0.414432328326074,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:46897588..46897603,+ | |short_description=p@chr12:46897588..46897603,+ | ||
}} | }} |
Latest revision as of 08:42, 24 July 2015
Short description: | p@chr12:46897588..46897603, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:46897588..46897603, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 3.29e-56 | 14 |
corneal epithelial cell | 2.98e-44 | 2 |
keratinocyte | 2.91e-40 | 5 |
stratified squamous epithelial cell | 1.05e-33 | 6 |
keratin accumulating cell | 1.05e-33 | 6 |
stratified epithelial cell | 1.05e-33 | 6 |
keratinizing barrier epithelial cell | 1.05e-33 | 6 |
epithelial fate stem cell | 1.05e-33 | 6 |
stratified epithelial stem cell | 1.05e-33 | 6 |
surface ectodermal cell | 1.05e-33 | 6 |
ecto-epithelial cell | 1.91e-31 | 34 |
epidermal cell | 9.35e-23 | 9 |
ectodermal cell | 1.91e-14 | 72 |
squamous epithelial cell | 6.54e-09 | 63 |
epithelial cell of prostate | 8.96e-09 | 3 |
epithelial cell of Malassez | 9.66e-09 | 3 |
gingival epithelial cell | 1.12e-08 | 3 |
embryonic cell | 8.32e-07 | 250 |
epithelial cell | 8.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
cornea | 1.00e-22 | 4 |
eye surface | 1.00e-22 | 4 |
optic eminence | 1.00e-22 | 4 |
corneal primordium | 1.00e-22 | 4 |
surface structure | 4.51e-14 | 99 |
skin epidermis | 5.89e-14 | 15 |
outer epithelium | 5.89e-14 | 15 |
enveloping layer of ectoderm | 5.89e-14 | 15 |
neural crest-derived structure | 1.05e-09 | 10 |
neural crest | 1.05e-09 | 10 |
neural fold | 1.05e-09 | 10 |
gingival epithelium | 1.12e-08 | 3 |
ecto-epithelium | 1.56e-07 | 104 |
anterior segment of eyeball | 3.44e-07 | 14 |
jaw skeleton | 7.27e-07 | 4 |
splanchnocranium | 7.27e-07 | 4 |