FFCP PHASE1:Hg19::chr19:54368876..54368891,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:54368876..54368891,+ | |||
|description=CAGE_peak_at_chr19:54368876..54368891,+ | |description=CAGE_peak_at_chr19:54368876..54368891,+ | ||
|id=chr19:54368876..54368891,+ | |id=chr19:54368876..54368891,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.60e-10!254;CL:0002150!2.28e-08!3;CL:0000861!2.28e-08!3;CL:0002541!1.53e-07!3 | |ontology_enrichment_celltype=CL:0000066!2.60e-10!254;CL:0002150!2.28e-08!3;CL:0000861!2.28e-08!3;CL:0002541!1.53e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.92e-18;12!CL:0000313;4.72e-15;1!CL:0000159;3.56e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.99e-18,12;CL:0000313,4.73e-15,1;CL:0000066,9.64e-09,253;CL:0000159,3.56e-08,2;CL:0000223,5.43e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.89e-20;11!UBERON:0009497;7.00e-17;13!UBERON:0001041;8.61e-16;30!UBERON:0003104;3.66e-07;31 | |||
|ontology_enrichment_disease=DOID:305!1.22e-36!106;DOID:0050687!2.96e-26!143;DOID:162!2.58e-15!235;DOID:14566!1.07e-14!239;DOID:299!1.05e-09!25;DOID:1749!3.99e-07!14 | |ontology_enrichment_disease=DOID:305!1.22e-36!106;DOID:0050687!2.96e-26!143;DOID:162!2.58e-15!235;DOID:14566!1.07e-14!239;DOID:299!1.05e-09!25;DOID:1749!3.99e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:4468;3.82e-27;2!DOID:299;8.75e-19;25!DOID:2152;4.72e-15;1!DOID:305;1.41e-08;106!DOID:120;4.12e-08;27!DOID:193;1.45e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,5.34e-27,2;DOID:305,4.86e-23,106;DOID:299,9.93e-19,25;DOID:0050687,1.06e-16,143;DOID:2152,4.73e-15,1;DOID:162,1.71e-09,235;DOID:14566,2.91e-09,239;DOID:120,4.49e-08,27;DOID:193,1.57e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.28e-15!9;UBERON:0008947!5.99e-10!38;UBERON:0003258!5.99e-10!38;UBERON:0000072!8.56e-09!46;UBERON:0001557!3.35e-08!19;UBERON:0001041!3.58e-08!98;UBERON:0000077!6.90e-08!130;UBERON:0000476!1.53e-07!3;UBERON:0000920!1.53e-07!3;UBERON:0000062!3.05e-07!511;UBERON:0000065!3.96e-07!53 | |ontology_enrichment_uberon=UBERON:0001737!2.28e-15!9;UBERON:0008947!5.99e-10!38;UBERON:0003258!5.99e-10!38;UBERON:0000072!8.56e-09!46;UBERON:0001557!3.35e-08!19;UBERON:0001041!3.58e-08!98;UBERON:0000077!6.90e-08!130;UBERON:0000476!1.53e-07!3;UBERON:0000920!1.53e-07!3;UBERON:0000062!3.05e-07!511;UBERON:0000065!3.96e-07!53 | ||
|ontology_enrichment_uberon_v019=UBERON:0004911;4.72e-15;1!UBERON:0002107;1.21e-11;19!UBERON:0006925;1.21e-11;19!UBERON:0002423;6.64e-09;25!UBERON:0004909;3.56e-08;2!UBERON:0002365;7.11e-07;31!UBERON:0002330;7.11e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,4.73e-15,1;UBERON:0002107,1.23e-11,19;UBERON:0006925,1.23e-11,19;UBERON:0008836,1.23e-11,19;UBERON:0008835,4.40e-10,22;UBERON:0003894,4.40e-10,22;UBERON:0009854,1.18e-09,23;UBERON:0007499,6.71e-09,25;UBERON:0009497,6.71e-09,25;UBERON:0000015,6.71e-09,25;UBERON:0002423,6.71e-09,25;UBERON:0006235,6.71e-09,25;UBERON:0004161,6.71e-09,25;UBERON:0009856,1.45e-08,26;UBERON:0004909,3.56e-08,2;UBERON:0002365,3.25e-07,31;UBERON:0002330,3.25e-07,31;UBERON:0001041,5.36e-07,87 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0.485168122375632,0,0,0,0,0,0,0.344745680736619,0,0,0.376484679085209,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0.337552664482532,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.946454400318751,0.337169380156203,0,0.220587945464788,0.653638332277218,0.237270619111097,0.404493924480493,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0.83654246567162,0,0,0,0,0,0.638002319463839,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,1.05499032264014,2.28525931422807,0,0,0,0,0,0,0,0,0,0,0.468528891450678,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0.569219092059585,0,1.04135843001079,0.685946781900644,0,0,0,1.25783230675811,1.31560770755134,0.739039113478883,0,0,0,0,0,0,0.586654148204409,0.400794101257669,0,3.39676336289621,0,0,0.171594997861965,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,2.32991899054908,5.27847321458398,5.02736736125115,5.12266933291805,0,0,0,0,0,0.275078873194468,0,0,0,0.182248669974074,0,0,0,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9084762440336,2.81926008926669,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0.132864840313363,0,0,0.491545817507439,0.211312123358627,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0.138314504928436,0,0,0.196295437002051,0,0,0.346576998451015,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.203909198930495,0.0657727735628491,0.472775363535873,0,0,0.314231179832004,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,6.26390418067637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,4.58763333230399,0.320965466756673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0.18378979906969,0.250707539292375,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:54368876..54368891,+ | |short_description=p@chr19:54368876..54368891,+ | ||
}} | }} |
Latest revision as of 17:01, 27 July 2015
Short description: | p@chr19:54368876..54368891, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54368876..54368891, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.99e-18 | 12 |
serous secreting cell | 4.73e-15 | 1 |
epithelial cell | 9.64e-09 | 253 |
seromucus secreting cell | 3.56e-08 | 2 |
endodermal cell | 5.43e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 4.73e-15 | 1 |
liver | 1.23e-11 | 19 |
digestive gland | 1.23e-11 | 19 |
liver bud | 1.23e-11 | 19 |
hepatic diverticulum | 4.40e-10 | 22 |
liver primordium | 4.40e-10 | 22 |
digestive tract diverticulum | 1.18e-09 | 23 |
epithelial sac | 6.71e-09 | 25 |
epithelium of foregut-midgut junction | 6.71e-09 | 25 |
anatomical boundary | 6.71e-09 | 25 |
hepatobiliary system | 6.71e-09 | 25 |
foregut-midgut junction | 6.71e-09 | 25 |
septum transversum | 6.71e-09 | 25 |
sac | 1.45e-08 | 26 |
epithelium of gonad | 3.56e-08 | 2 |
exocrine gland | 3.25e-07 | 31 |
exocrine system | 3.25e-07 | 31 |
foregut | 5.36e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 5.34e-27 | 2 |
carcinoma | 4.86e-23 | 106 |
adenocarcinoma | 9.93e-19 | 25 |
cell type cancer | 1.06e-16 | 143 |
ovary epithelial cancer | 4.73e-15 | 1 |
cancer | 1.71e-09 | 235 |
disease of cellular proliferation | 2.91e-09 | 239 |
female reproductive organ cancer | 4.49e-08 | 27 |
reproductive organ cancer | 1.57e-07 | 29 |