FFCP PHASE1:Hg19::chr7:20686977..20686980,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=340273 | |EntrezGene=340273 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=46 | |HGNC=46 | ||
|TSSclassifier=strong | |||
|UniProt=B5MD19,Q2M3G0,A7BKA4,F8QQP8 | |UniProt=B5MD19,Q2M3G0,A7BKA4,F8QQP8 | ||
|association_with_transcript=11bp_to_ENST00000406935,ENST00000443026,NM_001163942,NM_001163993,NM_178559,uc003suv.3,uc003suw.3,uc011jyi.1_5end | |association_with_transcript=11bp_to_ENST00000406935,ENST00000443026,NM_001163942,NM_001163993,NM_178559,uc003suv.3,uc003suw.3,uc011jyi.1_5end | ||
|cluster_id=chr7:20686977..20686980,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_4_at_ABCB5_5end | |description=CAGE_peak_4_at_ABCB5_5end | ||
|id=chr7:20686977..20686980,+ | |id=chr7:20686977..20686980,+ | ||
|ontology_enrichment_celltype=CL:0000148!3.46e-22!10;CL:0000541!3.46e-22!10;CL:0000147!6.04e-21!14;CL:0000325!3.32e-11!39;CL:0000710!8.45e-11!20;CL:0002567!2.62e-09!3;CL:0000075!7.74e-08!27;CL:0002566!1.06e-07!1;CL:0000342!3.85e-07!1;CL:0002565!3.85e-07!1 | |ontology_enrichment_celltype=CL:0000148!3.46e-22!10;CL:0000541!3.46e-22!10;CL:0000147!6.04e-21!14;CL:0000325!3.32e-11!39;CL:0000710!8.45e-11!20;CL:0002567!2.62e-09!3;CL:0000075!7.74e-08!27;CL:0002566!1.06e-07!1;CL:0000342!3.85e-07!1;CL:0002565!3.85e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000148;5.85e-65;10!CL:0000147;1.88e-46;14!CL:0000710;1.50e-32;20!CL:0002567;5.50e-25;3!CL:0000075;4.03e-24;27!CL:0002566;1.08e-19;1!CL:0002077;5.62e-18;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.54e-65,10;CL:0000541,5.54e-65,10;CL:0000147,1.81e-46,14;CL:0000710,1.46e-32,20;CL:0002567,4.87e-25,3;CL:0000075,3.95e-24,27;CL:0002566,1.08e-19,1;CL:0002077,3.69e-19,34;CL:0000333,3.90e-15,41;CL:0000133,1.24e-10,59;CL:0000221,9.88e-09,72 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.71e-07;3 | |||
|ontology_enrichment_disease=DOID:1909!2.00e-13!2 | |ontology_enrichment_disease=DOID:1909!2.00e-13!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.42e-36;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.18e-36,2 | |||
|ontology_enrichment_uberon=UBERON:0006122!1.74e-07!1;UBERON:0000989!1.97e-07!1;UBERON:0008811!1.97e-07!1;UBERON:0006258!1.97e-07!1;UBERON:0005876!1.97e-07!1;UBERON:0004874!1.97e-07!1;UBERON:0002146!2.84e-07!1;UBERON:0005623!2.84e-07!1;UBERON:0002506!3.85e-07!1;UBERON:0001769!3.85e-07!1;UBERON:0007023!4.10e-07!115 | |ontology_enrichment_uberon=UBERON:0006122!1.74e-07!1;UBERON:0000989!1.97e-07!1;UBERON:0008811!1.97e-07!1;UBERON:0006258!1.97e-07!1;UBERON:0005876!1.97e-07!1;UBERON:0004874!1.97e-07!1;UBERON:0002146!2.84e-07!1;UBERON:0005623!2.84e-07!1;UBERON:0002506!3.85e-07!1;UBERON:0001769!3.85e-07!1;UBERON:0007023!4.10e-07!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p4@ABCB5 | |short_description=p4@ABCB5 | ||
}} | }} |
Latest revision as of 17:38, 17 September 2015
Short description: | p4@ABCB5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ABCB5_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 11bp_to_ENST00000406935, ENST00000443026, NM_001163942, NM_001163993, NM_178559, uc003suv.3, uc003suw.3, uc011jyi.1_5end |
EntrezGene: | ABCB5 |
HGNC: | 46 |
UniProt: | B5MD19Q2M3G0A7BKA4F8QQP8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.54e-65 | 10 |
melanoblast | 5.54e-65 | 10 |
pigment cell | 1.81e-46 | 14 |
neurecto-epithelial cell | 1.46e-32 | 20 |
light melanocyte | 4.87e-25 | 3 |
columnar/cuboidal epithelial cell | 3.95e-24 | 27 |
dark melanocyte | 1.08e-19 | 1 |
ecto-epithelial cell | 3.69e-19 | 34 |
migratory neural crest cell | 3.90e-15 | 41 |
neurectodermal cell | 1.24e-10 | 59 |
ectodermal cell | 9.88e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.18e-36 | 2 |