FFCP PHASE1:Hg19::chr22:45809495..45809506,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27127 | |EntrezGene=27127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11112 | |HGNC=11112 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NDV3 | |UniProt=Q8NDV3 | ||
|association_with_transcript=0bp_to_ENST00000404354,NM_148674,uc003bgc.2,uc003bgd.2_5end | |association_with_transcript=0bp_to_ENST00000404354,NM_148674,uc003bgc.2,uc003bgd.2_5end | ||
|cluster_id=chr22:45809495..45809506,- | |||
|coexpression_cluster_id=C2648 | |coexpression_cluster_id=C2648 | ||
|description=CAGE_peak_2_at_SMC1B_5end | |description=CAGE_peak_2_at_SMC1B_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002535;3.57e-27;2!CL:0002032;1.72e-14;1!CL:0000557;1.72e-14;1!CL:1000415;6.80e-08;2 | |ontology_enrichment_celltype_v019=CL:0002535;3.57e-27;2!CL:0002032;1.72e-14;1!CL:0000557;1.72e-14;1!CL:1000415;6.80e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,3.58e-27,2;CL:1000415,8.04e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0008425;7.63e-15;1 | |ontology_enrichment_development_v019=UBERON:0008425;7.63e-15;1 | ||
|ontology_enrichment_disease=DOID:14566!9.95e-17!239;DOID:305!1.90e-16!106;DOID:162!1.17e-15!235;DOID:0050687!5.94e-14!143;DOID:0050686!6.01e-10!137;DOID:4362!4.88e-08!5;DOID:299!7.52e-07!25 | |ontology_enrichment_disease=DOID:14566!9.95e-17!239;DOID:305!1.90e-16!106;DOID:162!1.17e-15!235;DOID:0050687!5.94e-14!143;DOID:0050686!6.01e-10!137;DOID:4362!4.88e-08!5;DOID:299!7.52e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:4362;1.76e-11;5!DOID:4929;6.80e-08;2 | |ontology_enrichment_disease_v019=DOID:4362;1.76e-11;5!DOID:4929;6.80e-08;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4362,1.76e-11,5;DOID:305,3.99e-09,106;DOID:4929,7.52e-08,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;3.57e-27;2!UBERON:0004801;3.57e-27;2!UBERON:0004913;1.72e-14;1!UBERON:0003703;1.72e-14;1!UBERON:0001174;1.72e-14;1!UBERON:0004914;1.72e-14;1!UBERON:0000002;1.01e-09;6!UBERON:0001560;1.01e-09;6!UBERON:0002294;1.85e-08;7!UBERON:0001173;1.85e-08;7!UBERON:0000473;9.23e-08;8 | |ontology_enrichment_uberon_v019=UBERON:0006955;3.57e-27;2!UBERON:0004801;3.57e-27;2!UBERON:0004913;1.72e-14;1!UBERON:0003703;1.72e-14;1!UBERON:0001174;1.72e-14;1!UBERON:0004914;1.72e-14;1!UBERON:0000002;1.01e-09;6!UBERON:0001560;1.01e-09;6!UBERON:0002294;1.85e-08;7!UBERON:0001173;1.85e-08;7!UBERON:0000473;9.23e-08;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,3.58e-27,2;UBERON:0004801,3.58e-27,2;UBERON:0004913,2.11e-14,1;UBERON:0003703,2.11e-14,1;UBERON:0001174,2.11e-14,1;UBERON:0004914,2.11e-14,1;UBERON:0000002,1.01e-09,6;UBERON:0001560,1.01e-09,6;UBERON:0000473,9.08e-08,8 | |||
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| ||
|short_description=p2@SMC1B | |short_description=p2@SMC1B | ||
}} | }} |
Latest revision as of 04:01, 25 September 2015
Short description: | p2@SMC1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMC1B_5end |
Coexpression cluster: | C2648_transitionalcell_acute_testis_small_breast_argyrophil_epidermoid |
Association with transcript: | 0bp_to_ENST00000404354, NM_148674, uc003bgc.2, uc003bgd.2_5end |
EntrezGene: | SMC1B |
HGNC: | 11112 |
UniProt: | Q8NDV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 3.58e-27 | 2 |
epithelial cell of gall bladder | 8.04e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 3.58e-27 | 2 |
cervix epithelium | 3.58e-27 | 2 |
hepatopancreatic ampulla | 2.11e-14 | 1 |
extrahepatic bile duct | 2.11e-14 | 1 |
common bile duct | 2.11e-14 | 1 |
duodenal papilla | 2.11e-14 | 1 |
uterine cervix | 1.01e-09 | 6 |
neck of organ | 1.01e-09 | 6 |
testis | 9.08e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.76e-11 | 5 |
carcinoma | 3.99e-09 | 106 |
tubular adenocarcinoma | 7.52e-08 | 2 |