FFCP PHASE1:Hg19::chr19:13692483..13692485,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:13692483..13692485,- | |||
|description=CAGE_peak_at_chr19:13692483..13692485,- | |description=CAGE_peak_at_chr19:13692483..13692485,- | ||
|id=chr19:13692483..13692485,- | |id=chr19:13692483..13692485,- | ||
|ontology_enrichment_celltype=CL:0000066!2.56e-17!254;CL:0002076!4.02e-17!43;CL:0002159!1.05e-16!13;CL:0002328!8.87e-15!3;CL:0000240!3.45e-12!6;CL:0000311!3.45e-12!6;CL:0000079!3.45e-12!6;CL:0000237!3.45e-12!6;CL:0000036!3.45e-12!6;CL:0000357!3.45e-12!6;CL:0000114!3.45e-12!6;CL:0002368!5.16e-12!13;CL:0000223!1.22e-11!59;CL:0002327!1.09e-10!4;CL:0000575!2.12e-10!2;CL:0000312!8.28e-09!5;CL:0002202!1.81e-08!9;CL:0002632!1.81e-08!9;CL:0002077!1.00e-07!33;CL:0002166!2.51e-07!3;CL:0002251!5.21e-07!21;CL:0000239!6.19e-07!3;CL:1000615!6.19e-07!3;CL:0002306!6.19e-07!3;CL:0002231!9.89e-07!3 | |ontology_enrichment_celltype=CL:0000066!2.56e-17!254;CL:0002076!4.02e-17!43;CL:0002159!1.05e-16!13;CL:0002328!8.87e-15!3;CL:0000240!3.45e-12!6;CL:0000311!3.45e-12!6;CL:0000079!3.45e-12!6;CL:0000237!3.45e-12!6;CL:0000036!3.45e-12!6;CL:0000357!3.45e-12!6;CL:0000114!3.45e-12!6;CL:0002368!5.16e-12!13;CL:0000223!1.22e-11!59;CL:0002327!1.09e-10!4;CL:0000575!2.12e-10!2;CL:0000312!8.28e-09!5;CL:0002202!1.81e-08!9;CL:0002632!1.81e-08!9;CL:0002077!1.00e-07!33;CL:0002166!2.51e-07!3;CL:0002251!5.21e-07!21;CL:0000239!6.19e-07!3;CL:1000615!6.19e-07!3;CL:0002306!6.19e-07!3;CL:0002231!9.89e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002159;1.33e-29;14!CL:0002166;4.35e-23;3!CL:0002328;8.03e-23;3!CL:0002252;3.74e-18;1!CL:0000244;1.39e-17;4!CL:0000731;1.39e-17;4!CL:0002327;2.19e-17;4!CL:0000312;4.11e-14;5!CL:0000240;6.34e-12;6!CL:0000311;6.34e-12;6!CL:0000079;6.34e-12;6!CL:0000237;6.34e-12;6!CL:0002077;4.66e-11;34!CL:0000575;7.97e-10;2!CL:0002202;2.96e-08;9!CL:0000362;2.96e-08;9!CL:0002632;2.96e-08;9 | |ontology_enrichment_celltype_v019=CL:0002159;1.33e-29;14!CL:0002166;4.35e-23;3!CL:0002328;8.03e-23;3!CL:0002252;3.74e-18;1!CL:0000244;1.39e-17;4!CL:0000731;1.39e-17;4!CL:0002327;2.19e-17;4!CL:0000312;4.11e-14;5!CL:0000240;6.34e-12;6!CL:0000311;6.34e-12;6!CL:0000079;6.34e-12;6!CL:0000237;6.34e-12;6!CL:0002077;4.66e-11;34!CL:0000575;7.97e-10;2!CL:0002202;2.96e-08;9!CL:0000362;2.96e-08;9!CL:0002632;2.96e-08;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.45e-29,14;CL:0002166,3.68e-23,3;CL:0002328,5.76e-23,3;CL:0002252,3.16e-18,1;CL:0000244,1.22e-17,4;CL:0000731,1.22e-17,4;CL:0002327,3.06e-17,4;CL:0000312,5.01e-14,5;CL:0002077,2.97e-12,34;CL:0000240,7.48e-12,6;CL:0000311,7.48e-12,6;CL:0000079,7.48e-12,6;CL:0000237,7.48e-12,6;CL:0000036,7.48e-12,6;CL:0000357,7.48e-12,6;CL:0000114,7.48e-12,6;CL:0000575,7.98e-10,2;CL:0000066,1.64e-08,253;CL:0002202,2.65e-08,9;CL:0002632,2.65e-08,9;CL:0000362,3.30e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000357;6.34e-12;6!CL:0000114;6.34e-12;6 | |ontology_enrichment_development_v019=CL:0000357;6.34e-12;6!CL:0000114;6.34e-12;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004815;8.03e-23;3!UBERON:0002031;8.03e-23;3!UBERON:0001708;1.39e-17;4!UBERON:0008895;1.39e-17;4!UBERON:0001911;2.19e-17;4!UBERON:0011159;2.85e-14;5!UBERON:0000365;2.85e-14;5!UBERON:0002185;4.11e-14;5!UBERON:0005910;4.68e-12;6!UBERON:0000485;2.35e-10;7!UBERON:0011137;5.55e-07;11!UBERON:0010323;5.55e-07;11!UBERON:0001043;6.50e-07;3!UBERON:0005911;7.91e-07;36 | |ontology_enrichment_uberon_v019=UBERON:0004815;8.03e-23;3!UBERON:0002031;8.03e-23;3!UBERON:0001708;1.39e-17;4!UBERON:0008895;1.39e-17;4!UBERON:0001911;2.19e-17;4!UBERON:0011159;2.85e-14;5!UBERON:0000365;2.85e-14;5!UBERON:0002185;4.11e-14;5!UBERON:0005910;4.68e-12;6!UBERON:0000485;2.35e-10;7!UBERON:0011137;5.55e-07;11!UBERON:0010323;5.55e-07;11!UBERON:0001043;6.50e-07;3!UBERON:0005911;7.91e-07;36 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,5.76e-23,3;UBERON:0002031,5.76e-23,3;UBERON:0001708,1.22e-17,4;UBERON:0008895,1.22e-17,4;UBERON:0001911,3.06e-17,4;UBERON:0005333,3.06e-17,4;UBERON:0008425,3.06e-17,4;UBERON:0005311,3.06e-17,4;UBERON:0011159,2.58e-14,5;UBERON:0000365,2.58e-14,5;UBERON:0002185,3.37e-14,5;UBERON:0005910,4.30e-12,6;UBERON:0010188,4.30e-12,6;UBERON:0002539,4.30e-12,6;UBERON:0008816,4.30e-12,6;UBERON:0000076,4.19e-09,8;UBERON:0005157,7.78e-09,47;UBERON:0000485,2.65e-08,9;UBERON:0005153,2.09e-07,37;UBERON:0010323,5.31e-07,11;UBERON:0001043,6.14e-07,3;UBERON:0009143,6.14e-07,3 | |||
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|short_description=p@chr19:13692483..13692485,- | |short_description=p@chr19:13692483..13692485,- | ||
}} | }} |
Latest revision as of 04:07, 26 July 2015
Short description: | p@chr19:13692483..13692485, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:13692483..13692485, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.45e-29 | 14 |
epithelial cell of Malassez | 3.68e-23 | 3 |
bronchial epithelial cell | 5.76e-23 | 3 |
epithelial cell of esophagus | 3.16e-18 | 1 |
transitional epithelial cell | 1.22e-17 | 4 |
urothelial cell | 1.22e-17 | 4 |
mammary gland epithelial cell | 3.06e-17 | 4 |
keratinocyte | 5.01e-14 | 5 |
ecto-epithelial cell | 2.97e-12 | 34 |
stratified squamous epithelial cell | 7.48e-12 | 6 |
keratin accumulating cell | 7.48e-12 | 6 |
stratified epithelial cell | 7.48e-12 | 6 |
keratinizing barrier epithelial cell | 7.48e-12 | 6 |
epithelial fate stem cell | 7.48e-12 | 6 |
stratified epithelial stem cell | 7.48e-12 | 6 |
surface ectodermal cell | 7.48e-12 | 6 |
corneal epithelial cell | 7.98e-10 | 2 |
epithelial cell | 1.64e-08 | 253 |
epithelial cell of tracheobronchial tree | 2.65e-08 | 9 |
epithelial cell of lower respiratory tract | 2.65e-08 | 9 |
epidermal cell | 3.30e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 5.76e-23 | 3 |
epithelium of bronchus | 5.76e-23 | 3 |
jaw skeleton | 1.22e-17 | 4 |
splanchnocranium | 1.22e-17 | 4 |
mammary gland | 3.06e-17 | 4 |
mammary bud | 3.06e-17 | 4 |
mammary ridge | 3.06e-17 | 4 |
mammary placode | 3.06e-17 | 4 |
primary subdivision of cranial skeletal system | 2.58e-14 | 5 |
urothelium | 2.58e-14 | 5 |
bronchus | 3.37e-14 | 5 |
transitional epithelium | 4.30e-12 | 6 |
protuberance | 4.30e-12 | 6 |
pharyngeal arch | 4.30e-12 | 6 |
embryonic head | 4.30e-12 | 6 |
external ectoderm | 4.19e-09 | 8 |
epithelial fold | 7.78e-09 | 47 |
simple columnar epithelium | 2.65e-08 | 9 |
epithelial bud | 2.09e-07 | 37 |
cranial skeletal system | 5.31e-07 | 11 |
esophagus | 6.14e-07 | 3 |
esophageal region | 6.14e-07 | 3 |