FFCP PHASE1:Hg19::chr19:18433910..18433944,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25804 | |EntrezGene=25804 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17259 | |HGNC=17259 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y4Z0 | |UniProt=Q9Y4Z0 | ||
|association_with_transcript=56bp_to_ENST00000252816,NM_001252129,NM_012321,uc002niq.2_5end | |association_with_transcript=56bp_to_ENST00000252816,NM_001252129,NM_012321,uc002niq.2_5end | ||
|cluster_id=chr19:18433910..18433944,- | |||
|coexpression_cluster_id=C3766 | |coexpression_cluster_id=C3766 | ||
|description=CAGE_peak_2_at_LSM4_5end | |description=CAGE_peak_2_at_LSM4_5end | ||
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|ontology_enrichment_celltype=CL:0000066!2.11e-21!254;CL:0000012!3.21e-20!682;CL:0000548!1.07e-19!679;CL:0000004!1.07e-19!679;CL:0000255!1.07e-19!679;CL:0000003!1.67e-14!722;CL:0002321!5.04e-11!248;CL:0000144!8.77e-11!625;CL:0000220!1.75e-10!246;CL:0000063!9.30e-10!578;CL:1000449!9.12e-08!16;CL:1000497!2.23e-07!18;CL:0002518!2.23e-07!18;CL:0002681!9.84e-07!13;CL:0002584!9.84e-07!13 | |ontology_enrichment_celltype=CL:0000066!2.11e-21!254;CL:0000012!3.21e-20!682;CL:0000548!1.07e-19!679;CL:0000004!1.07e-19!679;CL:0000255!1.07e-19!679;CL:0000003!1.67e-14!722;CL:0002321!5.04e-11!248;CL:0000144!8.77e-11!625;CL:0000220!1.75e-10!246;CL:0000063!9.30e-10!578;CL:1000449!9.12e-08!16;CL:1000497!2.23e-07!18;CL:0002518!2.23e-07!18;CL:0002681!9.84e-07!13;CL:0002584!9.84e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:1000449;2.63e-08;15!CL:1000497;8.07e-08;17!CL:0002518;8.07e-08;17!CL:0002681;2.64e-07;12!CL:0002584;2.64e-07;12 | |ontology_enrichment_celltype_v019=CL:1000449;2.63e-08;15!CL:1000497;8.07e-08;17!CL:0002518;8.07e-08;17!CL:0002681;2.64e-07;12!CL:0002584;2.64e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.58e-21,253;CL:0002321,3.06e-11,250;CL:1000449,2.48e-08,15;CL:1000497,7.39e-08,17;CL:0002518,7.39e-08,17;CL:0002681,2.53e-07,12;CL:0002584,2.53e-07,12 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!1.90e-21!235;DOID:14566!4.61e-21!239;DOID:2531!1.51e-13!51;DOID:0060083!1.51e-13!51;DOID:1240!3.50e-13!39;DOID:0050687!1.03e-11!143;DOID:8692!2.30e-11!31;DOID:0050686!3.20e-10!137;DOID:305!2.91e-08!106;DOID:3095!8.50e-07!22;DOID:2994!8.50e-07!22 | |ontology_enrichment_disease=DOID:162!1.90e-21!235;DOID:14566!4.61e-21!239;DOID:2531!1.51e-13!51;DOID:0060083!1.51e-13!51;DOID:1240!3.50e-13!39;DOID:0050687!1.03e-11!143;DOID:8692!2.30e-11!31;DOID:0050686!3.20e-10!137;DOID:305!2.91e-08!106;DOID:3095!8.50e-07!22;DOID:2994!8.50e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:8692;4.34e-11;31!DOID:1240;3.21e-10;39!DOID:2531;2.20e-09;51!DOID:0060083;2.20e-09;51!DOID:3095;9.45e-07;22!DOID:2994;9.45e-07;22 | |ontology_enrichment_disease_v019=DOID:8692;4.34e-11;31!DOID:1240;3.21e-10;39!DOID:2531;2.20e-09;51!DOID:0060083;2.20e-09;51!DOID:3095;9.45e-07;22!DOID:2994;9.45e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:162,1.90e-21,235;DOID:14566,4.61e-21,239;DOID:2531,1.51e-13,51;DOID:0060083,1.51e-13,51;DOID:1240,3.50e-13,39;DOID:0050687,1.03e-11,143;DOID:8692,2.30e-11,31;DOID:0050686,3.20e-10,137;DOID:305,2.91e-08,106;DOID:3095,8.50e-07,22;DOID:2994,8.50e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0004211!9.12e-08!16;UBERON:0001285!9.12e-08!16;UBERON:0007684!9.12e-08!16;UBERON:0003220!9.12e-08!16;UBERON:0004208!9.12e-08!16;UBERON:0001851!2.64e-07!16;UBERON:0001225!9.84e-07!13;UBERON:0008987!9.84e-07!13 | |ontology_enrichment_uberon=UBERON:0004211!9.12e-08!16;UBERON:0001285!9.12e-08!16;UBERON:0007684!9.12e-08!16;UBERON:0003220!9.12e-08!16;UBERON:0004208!9.12e-08!16;UBERON:0001851!2.64e-07!16;UBERON:0001225!9.84e-07!13;UBERON:0008987!9.84e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.63e-08;15!UBERON:0004819;2.63e-08;15!UBERON:0001285;2.63e-08;15!UBERON:0007684;2.63e-08;15!UBERON:0001851;7.99e-08;15!UBERON:0002113;1.15e-07;24!UBERON:0011143;1.15e-07;24!UBERON:0000353;1.24e-07;15!UBERON:0006554;2.61e-07;30!UBERON:0001008;2.61e-07;30!UBERON:0001225;2.64e-07;12!UBERON:0008987;2.64e-07;12!UBERON:0000072;7.57e-07;37 | |ontology_enrichment_uberon_v019=UBERON:0006555;2.63e-08;15!UBERON:0004819;2.63e-08;15!UBERON:0001285;2.63e-08;15!UBERON:0007684;2.63e-08;15!UBERON:0001851;7.99e-08;15!UBERON:0002113;1.15e-07;24!UBERON:0011143;1.15e-07;24!UBERON:0000353;1.24e-07;15!UBERON:0006554;2.61e-07;30!UBERON:0001008;2.61e-07;30!UBERON:0001225;2.64e-07;12!UBERON:0008987;2.64e-07;12!UBERON:0000072;7.57e-07;37 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.48e-08,15;UBERON:0009773,2.48e-08,15;UBERON:0001231,2.48e-08,15;UBERON:0001285,2.48e-08,15;UBERON:0007684,2.48e-08,15;UBERON:0004208,2.48e-08,15;UBERON:0001851,7.79e-08,15;UBERON:0000353,1.22e-07,15;UBERON:0001225,2.53e-07,12;UBERON:0008987,2.53e-07,12;UBERON:0006555,3.80e-07,16;UBERON:0004819,3.80e-07,16 | |||
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|short_description=p2@LSM4 | |short_description=p2@LSM4 | ||
}} | }} |
Latest revision as of 15:38, 16 September 2015
Short description: | p2@LSM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LSM4_5end |
Coexpression cluster: | C3766_Alveolar_Renal_chronic_Placental_nonsmall_acute_carcinoid |
Association with transcript: | 56bp_to_ENST00000252816, NM_001252129, NM_012321, uc002niq.2_5end |
EntrezGene: | LSM4 |
HGNC: | 17259 |
UniProt: | Q9Y4Z0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.58e-21 | 253 |
embryonic cell | 3.06e-11 | 250 |
epithelial cell of nephron | 2.48e-08 | 15 |
kidney cell | 7.39e-08 | 17 |
kidney epithelial cell | 7.39e-08 | 17 |
kidney cortical cell | 2.53e-07 | 12 |
renal cortical epithelial cell | 2.53e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.48e-08 | 15 |
renal tubule | 2.48e-08 | 15 |
nephron tubule | 2.48e-08 | 15 |
nephron | 2.48e-08 | 15 |
uriniferous tubule | 2.48e-08 | 15 |
nephrogenic mesenchyme | 2.48e-08 | 15 |
cortex | 7.79e-08 | 15 |
parenchyma | 1.22e-07 | 15 |
cortex of kidney | 2.53e-07 | 12 |
renal parenchyma | 2.53e-07 | 12 |
excretory tube | 3.80e-07 | 16 |
kidney epithelium | 3.80e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.90e-21 | 235 |
disease of cellular proliferation | 4.61e-21 | 239 |
hematologic cancer | 1.51e-13 | 51 |
immune system cancer | 1.51e-13 | 51 |
leukemia | 3.50e-13 | 39 |
cell type cancer | 1.03e-11 | 143 |
myeloid leukemia | 2.30e-11 | 31 |
organ system cancer | 3.20e-10 | 137 |
carcinoma | 2.91e-08 | 106 |
germ cell and embryonal cancer | 8.50e-07 | 22 |
germ cell cancer | 8.50e-07 | 22 |