FFCP PHASE1:Hg19::chr12:109747040..109747055,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=121643 | |EntrezGene=121643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21399 | |HGNC=21399 | ||
|TSSclassifier=strong | |||
|UniProt=Q96NZ1,A6H901 | |UniProt=Q96NZ1,A6H901 | ||
|association_with_transcript=-15bp_to_ENST00000266856,ENST00000299162,ENST00000355216,NM_213596,uc001toe.3,uc001tof.3_5end | |association_with_transcript=-15bp_to_ENST00000266856,ENST00000299162,ENST00000355216,NM_213596,uc001toe.3,uc001tof.3_5end | ||
|cluster_id=chr12:109747040..109747055,- | |||
|coexpression_cluster_id=C3235 | |coexpression_cluster_id=C3235 | ||
|description=CAGE_peak_1_at_FOXN4_5end | |description=CAGE_peak_1_at_FOXN4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000242!8.92e-10!2;CL:0002322!1.36e-07!5 | |ontology_enrichment_celltype=CL:0000242!8.92e-10!2;CL:0002322!1.36e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000123;8.13e-28;2!CL:0000242;8.13e-28;2!CL:0000312;9.77e-12;5!CL:0000240;6.21e-10;6!CL:0000311;6.21e-10;6!CL:0000079;6.21e-10;6!CL:0000237;6.21e-10;6!CL:0002319;3.93e-08;25!CL:0000047;7.27e-08;2!CL:0002253;7.27e-08;2!CL:1000415;7.27e-08;2!CL:0000362;6.60e-07;9!CL:0000095;6.84e-07;17 | |ontology_enrichment_celltype_v019=CL:0000123;8.13e-28;2!CL:0000242;8.13e-28;2!CL:0000312;9.77e-12;5!CL:0000240;6.21e-10;6!CL:0000311;6.21e-10;6!CL:0000079;6.21e-10;6!CL:0000237;6.21e-10;6!CL:0002319;3.93e-08;25!CL:0000047;7.27e-08;2!CL:0002253;7.27e-08;2!CL:1000415;7.27e-08;2!CL:0000362;6.60e-07;9!CL:0000095;6.84e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,8.13e-28,2;CL:0000312,9.77e-12,5;CL:0000240,6.21e-10,6;CL:0000311,6.21e-10,6;CL:0000079,6.21e-10,6;CL:0000237,6.21e-10,6;CL:0000036,6.21e-10,6;CL:0000357,6.21e-10,6;CL:0000114,6.21e-10,6;CL:0002319,3.72e-08,25;CL:1000415,6.58e-08,2;CL:0002253,7.52e-08,2;CL:0000095,6.50e-07,17;CL:0000123,6.50e-07,17;CL:0000362,6.60e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;6.21e-10;6!CL:0000114;6.21e-10;6 | |ontology_enrichment_development_v019=CL:0000357;6.21e-10;6!CL:0000114;6.21e-10;6 | ||
|ontology_enrichment_disease=DOID:5409!8.50e-10!4;DOID:3119!1.87e-07!14 | |ontology_enrichment_disease=DOID:5409!8.50e-10!4;DOID:3119!1.87e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3119;1.25e-23;14!DOID:154;4.68e-08;2!DOID:4236;4.68e-08;2 | |ontology_enrichment_disease_v019=DOID:3119;1.25e-23;14!DOID:154;4.68e-08;2!DOID:4236;4.68e-08;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3119,1.37e-23,14;DOID:0050687,3.66e-08,143;DOID:154,4.69e-08,2;DOID:4236,4.69e-08,2;DOID:305,3.12e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0003127!1.59e-08!2;UBERON:0000013!5.99e-08!5;UBERON:0002410!5.99e-08!5 | |ontology_enrichment_uberon=UBERON:0003127!1.59e-08!2;UBERON:0000013!5.99e-08!5;UBERON:0002410!5.99e-08!5 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@FOXN4 | |short_description=p1@FOXN4 | ||
}} | }} |
Latest revision as of 06:36, 16 September 2015
Short description: | p1@FOXN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FOXN4_5end |
Coexpression cluster: | C3235_gastrointestinal_neuroblastoma_merkel_carcinosarcoma_non_carcinoid_colon |
Association with transcript: | -15bp_to_ENST00000266856, ENST00000299162, ENST00000355216, NM_213596, uc001toe.3, uc001tof.3_5end |
EntrezGene: | FOXN4 |
HGNC: | 21399 |
UniProt: | Q96NZ1A6H901 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 8.13e-28 | 2 |
keratinocyte | 9.77e-12 | 5 |
stratified squamous epithelial cell | 6.21e-10 | 6 |
keratin accumulating cell | 6.21e-10 | 6 |
stratified epithelial cell | 6.21e-10 | 6 |
keratinizing barrier epithelial cell | 6.21e-10 | 6 |
epithelial fate stem cell | 6.21e-10 | 6 |
stratified epithelial stem cell | 6.21e-10 | 6 |
surface ectodermal cell | 6.21e-10 | 6 |
neural cell | 3.72e-08 | 25 |
epithelial cell of gall bladder | 6.58e-08 | 2 |
epithelial cell of large intestine | 7.52e-08 | 2 |
neuron associated cell | 6.50e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.50e-07 | 17 |
epidermal cell | 6.60e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.37e-23 | 14 |
cell type cancer | 3.66e-08 | 143 |
mixed cell type cancer | 4.69e-08 | 2 |
carcinosarcoma | 4.69e-08 | 2 |
carcinoma | 3.12e-07 | 106 |