FFCP PHASE1:Hg19::chr9:117880683..117880699,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3371 | |EntrezGene=3371 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5318 | |HGNC=5318 | ||
|TSSclassifier=strong | |||
|UniProt=P24821,B4E1W8,Q4LE33 | |UniProt=P24821,B4E1W8,Q4LE33 | ||
|association_with_transcript=-147bp_to_ENST00000350763,NM_002160_5end | |association_with_transcript=-147bp_to_ENST00000350763,NM_002160_5end | ||
|cluster_id=chr9:117880683..117880699,- | |||
|description=CAGE_peak_12_at_TNC_5end | |description=CAGE_peak_12_at_TNC_5end | ||
|id=chr9:117880683..117880699,- | |id=chr9:117880683..117880699,- | ||
|ontology_enrichment_celltype=CL:0000128!8.00e-12!7;CL:0000126!8.00e-12!7;CL:0000127!8.00e-12!7;CL:0002453!8.00e-12!7;CL:0000055!4.65e-07!180;CL:0002620!9.54e-07!23 | |ontology_enrichment_celltype=CL:0000128!8.00e-12!7;CL:0000126!8.00e-12!7;CL:0000127!8.00e-12!7;CL:0002453!8.00e-12!7;CL:0000055!4.65e-07!180;CL:0002620!9.54e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0002603;3.85e-19;3!CL:0000064;1.62e-18;3!CL:0000067;1.62e-18;3!CL:0005012;1.62e-18;3!CL:0002304;1.62e-18;3!CL:0000128;6.23e-18;7!CL:0000126;6.23e-18;7!CL:0000127;6.23e-18;7!CL:0002319;2.90e-08;25!CL:0000047;4.08e-08;2!CL:0000243;1.02e-07;15!CL:0000125;1.02e-07;15!CL:0000095;5.87e-07;17 | |ontology_enrichment_celltype_v019=CL:0002603;3.85e-19;3!CL:0000064;1.62e-18;3!CL:0000067;1.62e-18;3!CL:0005012;1.62e-18;3!CL:0002304;1.62e-18;3!CL:0000128;6.23e-18;7!CL:0000126;6.23e-18;7!CL:0000127;6.23e-18;7!CL:0002319;2.90e-08;25!CL:0000047;4.08e-08;2!CL:0000243;1.02e-07;15!CL:0000125;1.02e-07;15!CL:0000095;5.87e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0002603,3.52e-19,3;CL:0000064,1.14e-18,3;CL:0000067,1.14e-18,3;CL:0005012,1.14e-18,3;CL:0002304,1.14e-18,3;CL:0000128,6.60e-18,7;CL:0000126,6.60e-18,7;CL:0000127,6.60e-18,7;CL:0002453,6.60e-18,7;CL:0000133,3.25e-10,59;CL:0000221,2.56e-08,72;CL:0002319,2.96e-08,25;CL:0000243,1.04e-07,15;CL:0000125,1.04e-07,15;CL:0000030,1.04e-07,15;CL:0000339,1.04e-07,15;CL:0000095,5.99e-07,17;CL:0000123,5.99e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000339;1.02e-07;15 | |ontology_enrichment_development_v019=CL:0000339;1.02e-07;15 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!2.72e-07!4 | |ontology_enrichment_uberon=UBERON:0000488!2.72e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.62e-18;3!UBERON:0001775;1.62e-18;3!UBERON:0000488;3.85e-14;4!UBERON:0002037;4.75e-10;6!UBERON:0002203;9.67e-10;6!UBERON:0001768;9.67e-10;6!UBERON:0002200;9.67e-10;6!UBERON:0002680;5.52e-07;9!UBERON:0001895;5.52e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0001778;1.62e-18;3!UBERON:0001775;1.62e-18;3!UBERON:0000488;3.85e-14;4!UBERON:0002037;4.75e-10;6!UBERON:0002203;9.67e-10;6!UBERON:0001768;9.67e-10;6!UBERON:0002200;9.67e-10;6!UBERON:0002680;5.52e-07;9!UBERON:0001895;5.52e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.14e-18,3;UBERON:0001775,1.14e-18,3;UBERON:0000488,2.95e-14,4;UBERON:0002037,4.54e-10,6;UBERON:0006215,4.54e-10,6;UBERON:0002203,8.11e-10,6;UBERON:0001768,8.11e-10,6;UBERON:0002200,8.11e-10,6;UBERON:0002680,5.37e-07,9;UBERON:0001895,5.37e-07,9;UBERON:0010092,5.37e-07,9 | |||
|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0,2.53299878168311,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,2.58554221961255,0.612002073732759,3.76145665773705,1.14494394852423,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0.795285947051099,0.486634870302636,1.22895262313288,1.77383517970051,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0,0.179389635688862,0,0.635795703478686,0.300091096084402,0.309157587715317,0,0.18611685633159,0.337552664482532,0.389748020644795,0,0,0,0.710019185033229,0.201504196455281,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0.109750285408626,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54094624222463,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0,0.902838299183157,0,0,0.664225598535437,0.553107505625109,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.246381468041427,1.03850885836724,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0.742585499285292,0,0,0,0.290012154876366,0,0,0,0,0.145016693914229,0,0.890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0,0.709522128141196,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.140669416410513,0,1.81284261649436,0,0,0,0,0.306806047506464,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419636705079985,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0.340776043570843,0.226624183040251,0,0,0.129282956361551,0.13223260174269,0,0,0,0.471612915298998,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,0,0,0,0,0,0,0,0,0.467426619694449,0.554805861502613,0,1.76097531226803,0,0.228840068396924,0,0.15543720058278,0,0,0,0.776314784381297,0,0,0,0,0.761610424337591,0,0.363697318405119,0.107410557042488,0.464033759878494,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,1.25812753484717,0,0,0.425149840203366,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,1.23109871051734,0,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0.128915775947154,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0.126166424835079,0.218531143927391,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0.162806537221949,0,0,0,0,0.611207220914332,0.406896178315738,0,0,0 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|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0,2.53299878168311,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,2.58554221961255,0.612002073732759,3.76145665773705,1.14494394852423,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0.795285947051099,0.486634870302636,1.22895262313288,1.77383517970051,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0,0.179389635688862,0,0.635795703478686,0.300091096084402,0.309157587715317,0,0.18611685633159,0.337552664482532,0.389748020644795,0,0,0,0.710019185033229,0.201504196455281,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0.109750285408626,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54094624222463,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0,0.902838299183157,0,0,0.664225598535437,0.553107505625109,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.246381468041427,1.03850885836724,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0.742585499285292,0,0,0,0.290012154876366,0,0,0,0,0.145016693914229,0,0.890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0,0.709522128141196,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.140669416410513,0,1.81284261649436,0,0,0,0,0.306806047506464,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419636705079985,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0.340776043570843,0.226624183040251,0,0,0.129282956361551,0.13223260174269,0,0,0,0.471612915298998,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,0,0,0,0,0,0,0,0,0.467426619694449,0.554805861502613,0,1.76097531226803,0,0.228840068396924,0,0.15543720058278,0,0,0,0.776314784381297,0,0,0,0,0.761610424337591,0,0.363697318405119,0.107410557042488,0.464033759878494,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,1.25812753484717,0,0,0.425149840203366,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,1.23109871051734,0,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0.128915775947154,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0.126166424835079,0.218531143927391,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0.162806537221949,0,0,0,0,0.611207220914332,0.406896178315738,0,0,0 | ||
|short_description=p12@TNC | |short_description=p12@TNC | ||
}} | }} |
Latest revision as of 17:10, 24 September 2015
Short description: | p12@TNC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_TNC_5end |
Coexpression cluster: | NA |
Association with transcript: | -147bp_to_ENST00000350763, NM_002160_5end |
EntrezGene: | TNC |
HGNC: | 5318 |
UniProt: | P24821B4E1W8Q4LE33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 3.52e-19 | 3 |
ciliated cell | 1.14e-18 | 3 |
ciliated epithelial cell | 1.14e-18 | 3 |
multi-ciliated epithelial cell | 1.14e-18 | 3 |
non-pigmented ciliary epithelial cell | 1.14e-18 | 3 |
oligodendrocyte | 6.60e-18 | 7 |
macroglial cell | 6.60e-18 | 7 |
astrocyte | 6.60e-18 | 7 |
oligodendrocyte precursor cell | 6.60e-18 | 7 |
neurectodermal cell | 3.25e-10 | 59 |
ectodermal cell | 2.56e-08 | 72 |
neural cell | 2.96e-08 | 25 |
glial cell (sensu Vertebrata) | 1.04e-07 | 15 |
glial cell | 1.04e-07 | 15 |
glioblast | 1.04e-07 | 15 |
glioblast (sensu Vertebrata) | 1.04e-07 | 15 |
neuron associated cell | 5.99e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.99e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.14e-18 | 3 |
ciliary body | 1.14e-18 | 3 |
atypical epithelium | 2.95e-14 | 4 |
cerebellum | 4.54e-10 | 6 |
rhombic lip | 4.54e-10 | 6 |
vasculature of eye | 8.11e-10 | 6 |
uvea | 8.11e-10 | 6 |
vasculature of head | 8.11e-10 | 6 |
regional part of metencephalon | 5.37e-07 | 9 |
metencephalon | 5.37e-07 | 9 |
future metencephalon | 5.37e-07 | 9 |