FFCP PHASE1:Hg19::chr5:141008737..141008740,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8841 | |EntrezGene=8841 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4854 | |HGNC=4854 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=50bp_to_ENST00000476739_5end | |association_with_transcript=50bp_to_ENST00000476739_5end | ||
|cluster_id=chr5:141008737..141008740,- | |||
|coexpression_cluster_id=C14 | |coexpression_cluster_id=C14 | ||
|description=CAGE_peak_4_at_HDAC3_5end | |description=CAGE_peak_4_at_HDAC3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000632;9.96e-15;3!CL:0000327;9.45e-07;15 | |ontology_enrichment_celltype_v019=CL:0000632;9.96e-15;3!CL:0000327;9.45e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000632,9.97e-15,3;CL:0000327,9.94e-07,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3571;1.13e-11;1 | |ontology_enrichment_disease_v019=DOID:3571;1.13e-11;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3571,1.63e-11,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.86e-44;15!UBERON:0000179;1.86e-44;15!UBERON:0000463;1.86e-44;15!UBERON:0002390;1.29e-30;32!UBERON:0002193;9.19e-19;42!UBERON:0007195;1.13e-11;1 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.86e-44;15!UBERON:0000179;1.86e-44;15!UBERON:0000463;1.86e-44;15!UBERON:0002390;1.29e-30;32!UBERON:0002193;9.19e-19;42!UBERON:0007195;1.13e-11;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.40e-44,15;UBERON:0000179,1.40e-44,15;UBERON:0000463,1.40e-44,15;UBERON:0007195,1.19e-11,1;UBERON:0002390,2.40e-09,98;UBERON:0003061,2.40e-09,98;UBERON:0004535,2.13e-08,109;UBERON:0002193,2.33e-08,108;UBERON:0001009,3.91e-08,112;UBERON:0003081,8.24e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0.738726348460727,0,0.313454721478088,0.85870796139317,0.273748850145768,0.251085279189606,0,0.164201178899891,0.157421562627358,0,0.383829398097213,0.154816123316076,0.919421224478927,0.30120591877825,0,0.309868802321207,0.284338464974843,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0.232429036905685,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0.209658645508376,0.22465726229299,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.328875809207352,0,0.579606171470105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,1.0843174571537,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0.571994910780128,0,0.39752481473341,0,0,0,0,0,0,0.258416759169329,0,0,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,2.1349799145941,0,0,0,0.163461903113459,0.151357427644931,0,0.468642863667593,0,0,0,0.352303495931295,0,0.280901613404497,0.204154171254893,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0.612975591598039,0,0.113432183160021,0,0.213557388818567,0.211931901159562,0,0.515262646192195,0,0,0,0.194874010322397,0,0.460249493211497,0.323292113637624,0,0.201504196455281,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,2.76269842704961,0,0,0,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0.514703430895577,0.219500570817251,0,0,0.0925884451585296,0,0,0,0.579652024875384,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.22001485746285,0,0,0,0.26593811658487,0,0,1.41849132023278,0.266422179016099,0.57191197463259,1.08524321078289,0,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0,0.448340575974109,0,0,0.128343036279748,0.508189248444927,0,0,0.167516265334349,0.637938751653163,0.749007023947182,0,0,0.24538298343828,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0,0,0,0,0.664225598535437,0,0.0868836144680828,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0.231046011313244,0.784349769176855,0,0.316654886678627,0,0.170093705276516,0,0,0.541892875087706,0.501689773854853,0,0,0,0.438519753291869,0.784306353074702,0.512900250232778,0.328014645699706,0,0,0,0.082509499920588,0,0,0,0.48335359146061,0,0.15350367472613,0.137836572484531,0.107420244868274,0.145016693914229,0,0.178064071293475,0,0,0,0,0.464845549297286,0,0,0,0.532306030317022,2.60979897622522,0,0,0,0,0,0,0,0.636406495851874,0.78494864019923,0,0,0,0.606547444719948,0,0,0.48763373908959,0,0,0.409499734223957,0,0,0,0,0.438450885253763,0,0,0,0,0,0.286822704408103,0.294747123039363,0.35667105148125,0.709522128141196,0,0,0.379473173765715,0.349934720244983,0.48111056362756,0,0,0,0,0,0,0,15.7308758861972,19.8805673857018,1.13929437434833,10.0057345692271,7.4045209155515,14.2664128462398,11.8806916192385,1.58625035258854,0,0,0.245040215981032,0.185803175125719,0.577076851905779,0.142283686696828,0.159426272728822,0,0,0,0,0,0.228234679033192,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0.179736702294654,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0.557694977114413,0,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0.31396051279005,0,0,0,0,0.189753732724185,0.476809736941136,0,0.326465616318295,0.424059214301822,0,0,0,0,0.296521128680622,0,0.208843899010911,0.067401132980677,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0.150323419414493,0.311064574191741,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0.343972064943233,0,0.146178634172371,0.0821154570532092,0,0.264768380074501,0,0.137041924646751,0.397429223405979,0,0.586654148204409,0,0,0,0,0.114536596165916,0,0,0,0,0.135904206073614,0.104602846312333,0.917983958726896,0.288950589901519,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0,1.08089965062721,0,0.0787831823072236,0,0.202210631562555,0.295282444544246,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0.5085370753095,0,0,0.326587360109409,0,0,0.511164065356265,0,0,0,0,0,0.171086837884329,0,0,0.471612915298998,0,0,0.395223263795889,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0.124980407962107,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0,0,0,0,0,0.15543720058278,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0.322231671127465,0,0,0,0,0,0,0.385239660814607,0.643324774124777,0,0,0.231522474323834,0,0.179088841081487,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0.19998739585493,0,0,0.567515953566836,0,0.279759015438889,0,0,0,0,0.109209638192014,0,0,0,0,0.318004350653419,0.0788617450012534,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.392590874004102,0,0,0.115525666150338,0,0,0.198916222116275,0,0,0,0,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,0.175871244359621,0.255524855279191,0,0,0,0,0.177404740325278,0.115233987555779,0.171488009437418,0,0,0.827356886187777,0.111231401892069,0,0,0,0.913158720509496,0,0.9555033757741,0,0.316027223465453,0.116241425368125,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0.955538938977433,0,0,0,0,0,1.1598144313382,0,0.467878926924211,0,0,0.22589216407792,0,0.150962843566674,0,0,0,0,0,0,0,0,0.169927114687817,0,0.0644578879735772,0.0999411559249289,0,0,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0.462175628631418,0,0.252332849670158,0.109265571963696,0.633492505057185,0.101988829741982,0,0.18378979906969,0,0.530450887527676,1.07185652062471,0,0,0,0,0.129177819672012,0,0.112131862580613,0,0,0,0,0,0,0,0.407016343054873,0.426909383510862,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0.738726348460727,0,0.313454721478088,0.85870796139317,0.273748850145768,0.251085279189606,0,0.164201178899891,0.157421562627358,0,0.383829398097213,0.154816123316076,0.919421224478927,0.30120591877825,0,0.309868802321207,0.284338464974843,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0.232429036905685,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0.209658645508376,0.22465726229299,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.328875809207352,0,0.579606171470105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,1.0843174571537,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0.571994910780128,0,0.39752481473341,0,0,0,0,0,0,0.258416759169329,0,0,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,2.1349799145941,0,0,0,0.163461903113459,0.151357427644931,0,0.468642863667593,0,0,0,0.352303495931295,0,0.280901613404497,0.204154171254893,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0.612975591598039,0,0.113432183160021,0,0.213557388818567,0.211931901159562,0,0.515262646192195,0,0,0,0.194874010322397,0,0.460249493211497,0.323292113637624,0,0.201504196455281,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,2.76269842704961,0,0,0,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0.514703430895577,0.219500570817251,0,0,0.0925884451585296,0,0,0,0.579652024875384,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.22001485746285,0,0,0,0.26593811658487,0,0,1.41849132023278,0.266422179016099,0.57191197463259,1.08524321078289,0,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0,0.448340575974109,0,0,0.128343036279748,0.508189248444927,0,0,0.167516265334349,0.637938751653163,0.749007023947182,0,0,0.24538298343828,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0,0,0,0,0.664225598535437,0,0.0868836144680828,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0.231046011313244,0.784349769176855,0,0.316654886678627,0,0.170093705276516,0,0,0.541892875087706,0.501689773854853,0,0,0,0.438519753291869,0.784306353074702,0.512900250232778,0.328014645699706,0,0,0,0.082509499920588,0,0,0,0.48335359146061,0,0.15350367472613,0.137836572484531,0.107420244868274,0.145016693914229,0,0.178064071293475,0,0,0,0,0.464845549297286,0,0,0,0.532306030317022,2.60979897622522,0,0,0,0,0,0,0,0.636406495851874,0.78494864019923,0,0,0,0.606547444719948,0,0,0.48763373908959,0,0,0.409499734223957,0,0,0,0,0.438450885253763,0,0,0,0,0,0.286822704408103,0.294747123039363,0.35667105148125,0.709522128141196,0,0,0.379473173765715,0.349934720244983,0.48111056362756,0,0,0,0,0,0,0,15.7308758861972,19.8805673857018,1.13929437434833,10.0057345692271,7.4045209155515,14.2664128462398,11.8806916192385,1.58625035258854,0,0,0.245040215981032,0.185803175125719,0.577076851905779,0.142283686696828,0.159426272728822,0,0,0,0,0,0.228234679033192,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0.179736702294654,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0.557694977114413,0,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0.31396051279005,0,0,0,0,0.189753732724185,0.476809736941136,0,0.326465616318295,0.424059214301822,0,0,0,0,0.296521128680622,0,0.208843899010911,0.067401132980677,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0.150323419414493,0.311064574191741,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0.343972064943233,0,0.146178634172371,0.0821154570532092,0,0.264768380074501,0,0.137041924646751,0.397429223405979,0,0.586654148204409,0,0,0,0,0.114536596165916,0,0,0,0,0.135904206073614,0.104602846312333,0.917983958726896,0.288950589901519,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0,1.08089965062721,0,0.0787831823072236,0,0.202210631562555,0.295282444544246,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0.5085370753095,0,0,0.326587360109409,0,0,0.511164065356265,0,0,0,0,0,0.171086837884329,0,0,0.471612915298998,0,0,0.395223263795889,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0.124980407962107,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0,0,0,0,0,0.15543720058278,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0.322231671127465,0,0,0,0,0,0,0.385239660814607,0.643324774124777,0,0,0.231522474323834,0,0.179088841081487,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0.19998739585493,0,0,0.567515953566836,0,0.279759015438889,0,0,0,0,0.109209638192014,0,0,0,0,0.318004350653419,0.0788617450012534,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.392590874004102,0,0,0.115525666150338,0,0,0.198916222116275,0,0,0,0,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,0.175871244359621,0.255524855279191,0,0,0,0,0.177404740325278,0.115233987555779,0.171488009437418,0,0,0.827356886187777,0.111231401892069,0,0,0,0.913158720509496,0,0.9555033757741,0,0.316027223465453,0.116241425368125,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0.955538938977433,0,0,0,0,0,1.1598144313382,0,0.467878926924211,0,0,0.22589216407792,0,0.150962843566674,0,0,0,0,0,0,0,0,0.169927114687817,0,0.0644578879735772,0.0999411559249289,0,0,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0.462175628631418,0,0.252332849670158,0.109265571963696,0.633492505057185,0.101988829741982,0,0.18378979906969,0,0.530450887527676,1.07185652062471,0,0,0,0,0.129177819672012,0,0.112131862580613,0,0,0,0,0,0,0,0.407016343054873,0.426909383510862,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p4@HDAC3 | |short_description=p4@HDAC3 | ||
}} | }} |
Latest revision as of 05:09, 25 September 2015
Short description: | p4@HDAC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HDAC3_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 50bp_to_ENST00000476739_5end |
EntrezGene: | HDAC3 |
HGNC: | 4854 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stellate cell | 9.97e-15 | 3 |
extracellular matrix secreting cell | 9.94e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
blood | 1.40e-44 | 15 |
haemolymphatic fluid | 1.40e-44 | 15 |
organism substance | 1.40e-44 | 15 |
stroma of bone marrow | 1.19e-11 | 1 |
hematopoietic system | 2.40e-09 | 98 |
blood island | 2.40e-09 | 98 |
cardiovascular system | 2.13e-08 | 109 |
hemolymphoid system | 2.33e-08 | 108 |
circulatory system | 3.91e-08 | 112 |
lateral plate mesoderm | 8.24e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.63e-11 | 1 |