FFCP PHASE1:Hg19::chr4:46307645..46307654,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2555 | |EntrezGene=2555 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4076 | |HGNC=4076 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-51bp_to_ENST00000514236_5end | |association_with_transcript=-51bp_to_ENST00000514236_5end | ||
|cluster_id=chr4:46307645..46307654,- | |||
|coexpression_cluster_id=C16 | |coexpression_cluster_id=C16 | ||
|description=CAGE_peak_27_at_GABRA2_5end | |description=CAGE_peak_27_at_GABRA2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!6.18e-44!41;UBERON:0001890!6.18e-44!41;UBERON:0006240!6.18e-44!41;UBERON:0001869!2.69e-43!32;UBERON:0003080!7.56e-43!42;UBERON:0001893!1.11e-40!34;UBERON:0001049!9.72e-40!57;UBERON:0005068!9.72e-40!57;UBERON:0006241!9.72e-40!57;UBERON:0007135!9.72e-40!57;UBERON:0002616!2.62e-38!59;UBERON:0002791!3.31e-36!33;UBERON:0002020!4.16e-35!34;UBERON:0003528!4.16e-35!34;UBERON:0002619!6.22e-32!22;UBERON:0000955!7.06e-32!69;UBERON:0006238!7.06e-32!69;UBERON:0001017!1.18e-29!82;UBERON:0003056!7.73e-29!61;UBERON:0003075!1.63e-28!86;UBERON:0007284!1.63e-28!86;UBERON:0001950!2.38e-28!20;UBERON:0005743!3.75e-28!86;UBERON:0000956!4.53e-28!25;UBERON:0000203!4.53e-28!25;UBERON:0002346!4.11e-27!90;UBERON:0000073!3.17e-25!94;UBERON:0001016!3.17e-25!94;UBERON:0005383!1.93e-24!3;UBERON:0005382!1.93e-24!3;UBERON:0007023!3.84e-23!115;UBERON:0000033!7.29e-19!123;UBERON:0000369!1.73e-18!4;UBERON:0002435!1.73e-18!4;UBERON:0000204!1.73e-18!4;UBERON:0010082!1.73e-18!4;UBERON:0000153!7.67e-18!129;UBERON:0007811!7.67e-18!129;UBERON:0001873!9.26e-17!2;UBERON:0010122!9.26e-17!2;UBERON:0004121!2.38e-14!169;UBERON:0002420!3.70e-14!9;UBERON:0007245!3.70e-14!9;UBERON:0010009!3.70e-14!9;UBERON:0010011!3.70e-14!9;UBERON:0000454!3.70e-14!9;UBERON:0000924!6.10e-14!173;UBERON:0006601!6.10e-14!173;UBERON:0009663!8.47e-11!7;UBERON:0000025!1.65e-09!194;UBERON:0001874!1.89e-09!1;UBERON:0001871!2.26e-09!7;UBERON:0003112!2.82e-09!1;UBERON:0000032!2.82e-09!1;UBERON:0005253!2.82e-09!1;UBERON:0003128!2.82e-09!1;UBERON:0002241!2.82e-09!1;UBERON:0001703!2.82e-09!1;UBERON:0004761!2.82e-09!1;UBERON:0009617!2.82e-09!1;UBERON:0007190!1.07e-08!1;UBERON:0002022!1.16e-08!1;UBERON:0002308!1.67e-08!9;UBERON:0000125!1.67e-08!9;UBERON:0000064!4.34e-08!219;UBERON:0000483!3.15e-07!309;UBERON:0002021!3.36e-07!5;UBERON:0000475!3.50e-07!365;UBERON:0000119!4.02e-07!312;UBERON:0000349!4.16e-07!5;UBERON:0001872!4.56e-07!5;UBERON:0004111!5.16e-07!241 | |ontology_enrichment_uberon=UBERON:0002780!6.18e-44!41;UBERON:0001890!6.18e-44!41;UBERON:0006240!6.18e-44!41;UBERON:0001869!2.69e-43!32;UBERON:0003080!7.56e-43!42;UBERON:0001893!1.11e-40!34;UBERON:0001049!9.72e-40!57;UBERON:0005068!9.72e-40!57;UBERON:0006241!9.72e-40!57;UBERON:0007135!9.72e-40!57;UBERON:0002616!2.62e-38!59;UBERON:0002791!3.31e-36!33;UBERON:0002020!4.16e-35!34;UBERON:0003528!4.16e-35!34;UBERON:0002619!6.22e-32!22;UBERON:0000955!7.06e-32!69;UBERON:0006238!7.06e-32!69;UBERON:0001017!1.18e-29!82;UBERON:0003056!7.73e-29!61;UBERON:0003075!1.63e-28!86;UBERON:0007284!1.63e-28!86;UBERON:0001950!2.38e-28!20;UBERON:0005743!3.75e-28!86;UBERON:0000956!4.53e-28!25;UBERON:0000203!4.53e-28!25;UBERON:0002346!4.11e-27!90;UBERON:0000073!3.17e-25!94;UBERON:0001016!3.17e-25!94;UBERON:0005383!1.93e-24!3;UBERON:0005382!1.93e-24!3;UBERON:0007023!3.84e-23!115;UBERON:0000033!7.29e-19!123;UBERON:0000369!1.73e-18!4;UBERON:0002435!1.73e-18!4;UBERON:0000204!1.73e-18!4;UBERON:0010082!1.73e-18!4;UBERON:0000153!7.67e-18!129;UBERON:0007811!7.67e-18!129;UBERON:0001873!9.26e-17!2;UBERON:0010122!9.26e-17!2;UBERON:0004121!2.38e-14!169;UBERON:0002420!3.70e-14!9;UBERON:0007245!3.70e-14!9;UBERON:0010009!3.70e-14!9;UBERON:0010011!3.70e-14!9;UBERON:0000454!3.70e-14!9;UBERON:0000924!6.10e-14!173;UBERON:0006601!6.10e-14!173;UBERON:0009663!8.47e-11!7;UBERON:0000025!1.65e-09!194;UBERON:0001874!1.89e-09!1;UBERON:0001871!2.26e-09!7;UBERON:0003112!2.82e-09!1;UBERON:0000032!2.82e-09!1;UBERON:0005253!2.82e-09!1;UBERON:0003128!2.82e-09!1;UBERON:0002241!2.82e-09!1;UBERON:0001703!2.82e-09!1;UBERON:0004761!2.82e-09!1;UBERON:0009617!2.82e-09!1;UBERON:0007190!1.07e-08!1;UBERON:0002022!1.16e-08!1;UBERON:0002308!1.67e-08!9;UBERON:0000125!1.67e-08!9;UBERON:0000064!4.34e-08!219;UBERON:0000483!3.15e-07!309;UBERON:0002021!3.36e-07!5;UBERON:0000475!3.50e-07!365;UBERON:0000119!4.02e-07!312;UBERON:0000349!4.16e-07!5;UBERON:0001872!4.56e-07!5;UBERON:0004111!5.16e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0002771;1.55e-98;2!UBERON:0000200;4.27e-34;6!UBERON:0001871;1.78e-29;6!UBERON:0001950;6.74e-11;20!UBERON:0002619;4.42e-10;22!UBERON:0000956;4.34e-09;25!UBERON:0000203;4.34e-09;25!UBERON:0001893;4.53e-08;34!UBERON:0003528;2.32e-07;34!UBERON:0002791;2.32e-07;32!UBERON:0002020;2.32e-07;34!UBERON:0001869;2.32e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0002771;1.55e-98;2!UBERON:0000200;4.27e-34;6!UBERON:0001871;1.78e-29;6!UBERON:0001950;6.74e-11;20!UBERON:0002619;4.42e-10;22!UBERON:0000956;4.34e-09;25!UBERON:0000203;4.34e-09;25!UBERON:0001893;4.53e-08;34!UBERON:0003528;2.32e-07;34!UBERON:0002791;2.32e-07;32!UBERON:0002020;2.32e-07;34!UBERON:0001869;2.32e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,1.55e-98,2;UBERON:0000200,4.27e-34,6;UBERON:0001871,1.78e-29,6;UBERON:0001950,6.74e-11,20;UBERON:0002619,4.42e-10,22;UBERON:0000956,4.34e-09,25;UBERON:0000203,4.34e-09,25;UBERON:0002791,1.82e-07,32;UBERON:0001869,1.82e-07,32;UBERON:0003528,4.03e-07,34;UBERON:0002020,4.03e-07,34;UBERON:0001893,4.03e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.221158519862449,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0.77380195455795,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05065662254908,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615349092722265,0.252071696221718,0,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.413373593002368,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785577949580009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.221158519862449,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0.77380195455795,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05065662254908,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615349092722265,0.252071696221718,0,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.413373593002368,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785577949580009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p27@GABRA2 | |short_description=p27@GABRA2 | ||
}} | }} |
Latest revision as of 21:26, 17 September 2015
Short description: | p27@GABRA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_27_at_GABRA2_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | -51bp_to_ENST00000514236_5end |
EntrezGene: | GABRA2 |
HGNC: | 4076 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 1.55e-98 | 2 |
gyrus | 4.27e-34 | 6 |
temporal lobe | 1.78e-29 | 6 |
neocortex | 6.74e-11 | 20 |
regional part of cerebral cortex | 4.42e-10 | 22 |
cerebral cortex | 4.34e-09 | 25 |
pallium | 4.34e-09 | 25 |
regional part of telencephalon | 1.82e-07 | 32 |
cerebral hemisphere | 1.82e-07 | 32 |
brain grey matter | 4.03e-07 | 34 |
gray matter | 4.03e-07 | 34 |
telencephalon | 4.03e-07 | 34 |