FFCP PHASE1:Hg19::chr12:49524009..49524032,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10376 | |EntrezGene=10376 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18809 | |HGNC=18809 | ||
|TSSclassifier=strong | |||
|UniProt=F8VWV9 | |UniProt=F8VWV9 | ||
|association_with_transcript=-113bp_to_ENST00000549870_5end | |association_with_transcript=-113bp_to_ENST00000549870_5end | ||
|cluster_id=chr12:49524009..49524032,- | |||
|coexpression_cluster_id=C19 | |coexpression_cluster_id=C19 | ||
|description=CAGE_peak_6_at_TUBA1B_5end | |description=CAGE_peak_6_at_TUBA1B_5end | ||
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|ontology_enrichment_celltype=CL:0000220!4.61e-12!246;CL:0002321!4.70e-12!248;CL:0000066!1.72e-08!254 | |ontology_enrichment_celltype=CL:0000220!4.61e-12!246;CL:0002321!4.70e-12!248;CL:0000066!1.72e-08!254 | ||
|ontology_enrichment_celltype_v019=CL:0002589;2.74e-10;2!CL:0002573;3.93e-07;2!CL:0002592;3.93e-07;3 | |ontology_enrichment_celltype_v019=CL:0002589;2.74e-10;2!CL:0002573;3.93e-07;2!CL:0002592;3.93e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002589,2.29e-10,2;CL:0002592,2.32e-07,3;CL:0002573,4.48e-07,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;1.06e-10;2 | |ontology_enrichment_disease_v019=DOID:1909;1.06e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.64e-10,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000988;1.43e-14;3!UBERON:0002298;1.30e-12;6!UBERON:0002148;2.74e-10;2!UBERON:0006331;2.74e-10;2!UBERON:0009662;2.74e-10;2!UBERON:0001529;2.74e-10;2!UBERON:0007204;2.74e-10;2!UBERON:0003498;3.93e-07;3!UBERON:0005985;3.93e-07;3!UBERON:0001621;3.93e-07;3!UBERON:0003513;7.66e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0000988;1.43e-14;3!UBERON:0002298;1.30e-12;6!UBERON:0002148;2.74e-10;2!UBERON:0006331;2.74e-10;2!UBERON:0009662;2.74e-10;2!UBERON:0001529;2.74e-10;2!UBERON:0007204;2.74e-10;2!UBERON:0003498;3.93e-07;3!UBERON:0005985;3.93e-07;3!UBERON:0001621;3.93e-07;3!UBERON:0003513;7.66e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000988,1.01e-14,3;UBERON:0002298,6.24e-13,6;UBERON:0002148,1.72e-10,2;UBERON:0006331,1.72e-10,2;UBERON:0009662,1.72e-10,2;UBERON:0001529,2.29e-10,2;UBERON:0007204,2.29e-10,2;UBERON:0001621,2.32e-07,3;UBERON:0003513,8.59e-07,7 | |||
|phase1_expression=0.54503513781167,0,0.281908808191942,0,1.78784437770915,0,0,0,0,0.737201809504527,0.697801167972428,0.218441372130172,0,0.123766352960047,0,0,0.602694528023977,0,0.487932798790507,0.369363174230364,0.204000691244253,0.626909442956176,0,0,0,0,0.492603536699674,0.314843125254717,0,0,0,0.919421224478927,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.144846518960824,0,0.486634870302636,0.0945348171640679,0.443458794925128,0.175669571386252,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0.694281003215189,0.56530794192401,0.838998872419812,0.825354125820202,0.208994966536811,0.258416759169329,0,0.33472061276467,0,0,0,0,0,0.267899184852239,0,0,1.53316637465883,0.949265659568129,0.183201743930407,0,3.87780264148325,0,0.993943903390637,0.379891534993739,0.264818361626438,0,0,0.560677600142307,2.1349799145941,0.49333509683432,0,0,0.163461903113459,0.454072282934794,0,0.468642863667593,0.312160076830321,0,0,0.23486899728753,0.647491777472526,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0.718618141816238,0,0.375355559615893,0,0,0,0.150238058906597,0.340296549480063,0.179389635688862,0,0,0.300091096084402,0.103052529238439,0.257640540045629,0.18611685633159,0,0.584622030967192,0,0,0,0,0.10075209822764,0.339121184620975,0.386521706326594,0,0.286804595389004,0.243947412259191,0,0.232387885739037,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.591534000199219,0,0.241011029883482,0,0,0.237270619111097,0.269662616320329,0,0,0,2.80483547606892,0,0,0,0,0,0,0.614942192715568,0.686271241194102,0.219500570817251,0,0.201057944823262,0,1.3032332212413,0,1.44331342025273,0,0.117408694235822,0.144366447761074,0.925971025153221,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0.358234090811393,0.290633938513962,0,0.985326475791887,0.088048434013226,0.414656231081544,0,0.12624243342638,0.571481048629521,1.52795370223311,0,0,0.308482478109971,0,0.571652865261156,0.112131084345361,0,0.1466765716419,0.646358578788889,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.602878754119172,0,0.199945982364114,0,0,0,0.239624855491583,0,0,1.15825045334063,0.205476322550383,0.179060963239896,0,0.197030760201927,0.215627574859517,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,0,0,0.542530047399471,0.207970861530807,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0.303127571446259,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0.384417447767103,0,0.321707842287215,0,0.462629081407967,0.177561725313127,0.0821271560138091,0,0.348631135379878,0.241718899183244,0.40101294060657,0.184161977871793,0.114814448164607,0.182091168006717,0.393373244878272,0,0.0770153371044148,0,1.46139224653261,0,0,0.510281115829547,0.215915916102139,0,0,1.00337954770971,0,0,0,0,0,0,1.31205858279882,0.976135183992909,0,0,0,0,0.650060246036521,0,0.48335359146061,0,0.307007349452259,0.137836572484531,0,0.290033387828457,0,0.534192213880424,0.495854746082934,1.15314040419064,0,0.10115778085555,0,0,0,0,2.12922412126809,0,1.66791797193528,1.28812398067792,0.372158369359667,0,0.571890581771475,0.255897791311334,0,0,0,0,0,0.117812402345686,1.61745985258653,1.58510321173008,0.842516912477962,0,0.243713489631284,2.11300293513511,0,0.565621727814851,0,0,0,1.31535265576129,0,0,0.405820753925408,0.6196469961995,0.563391205064483,0,0.196498082026242,0.7133421029625,0,0.211107635297664,0,0,0,0.577332676353072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0.371606350251437,0.144269212976445,0.0711418433484141,0.318852545457645,0.199579371432817,0,0,0,0.280797178113459,0,0.47003968731907,0,0,0.321176150207399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0.445773537109913,0,0,0,0,0,0.140669416410513,0.556543525114529,0,0.211125408127993,0,0,0.503865495708552,0,0,0,0.179736702294654,0.716084698702437,0,0,2.3948309234694,0,0,0.185536196323703,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0.435753854075961,0,0,0.341826167541004,0,0.0897576444097721,0.217294743844016,0,0,0,0,0,0.166211681900156,0,0.19606253431774,0,0,0,0.210998064528027,0.163232808159148,0,0.216388639742091,0,0,0,0.889563386041866,0.741383633679017,0.313265848516366,0.471807930864739,0,0.468528891450678,0,0.391329237864179,0,0,0,0,0.126373159256976,40.1363529836695,1.7626992537532,0,0.661983911750998,0.313932918407225,0,0.569219092059585,0.277349346026277,0.347119476670262,0,0.0870592065804026,0,0.51595809741485,0,0.0730893170861856,0,0.193978032976839,0.706049013532002,0,1.37041924646751,0.794858446811959,0.443175571691151,0,0.240476460754601,0,0.39961921916426,0.432271251462318,0.458146384663663,0,0.432164393964449,0,0,0,0.209205692624666,0.305994652908965,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823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| ||
|short_description=p6@TUBA1B | |short_description=p6@TUBA1B | ||
}} | }} |
Latest revision as of 15:42, 18 September 2015
Short description: | p6@TUBA1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TUBA1B_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | -113bp_to_ENST00000549870_5end |
EntrezGene: | TUBA1B |
HGNC: | 18809 |
UniProt: | F8VWV9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the brachiocephalic vasculature | 2.29e-10 | 2 |
smooth muscle cell of the coronary artery | 2.32e-07 | 3 |
Schwann cell | 4.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pons | 1.01e-14 | 3 |
brainstem | 6.24e-13 | 6 |
locus ceruleus | 1.72e-10 | 2 |
brainstem nucleus | 1.72e-10 | 2 |
hindbrain nucleus | 1.72e-10 | 2 |
brachiocephalic artery | 2.29e-10 | 2 |
brachiocephalic vasculature | 2.29e-10 | 2 |
coronary artery | 2.32e-07 | 3 |
trunk blood vessel | 8.59e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.64e-10 | 2 |